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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 461 |
| AccBSI | CCGCTC | 1 cut(s) | 571 |
| AccII | CGCG | 1 cut(s) | 372 |
| AciI | CCGC | 6 cut(s) | 41, 99, 119, 232, 284, 571 |
| AclWI | GGATC | 1 cut(s) | 25 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 105, 276 |
| AflIII | ACRYGT | 1 cut(s) | 300 |
| AgsI | TTSAA | 2 cut(s) | 347, 535 |
| AluBI | AGCT | 4 cut(s) | 216, 460, 511, 616 |
| AluI | AGCT | 4 cut(s) | 216, 460, 511, 616 |
| AlwI | GGATC | 1 cut(s) | 25 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 26 |
| AoxI | GGCC | 4 cut(s) | 233, 320, 549, 585 |
| ApeKI | GCWGC | 2 cut(s) | 467, 613 |
| AspS9I | GGNCC | 1 cut(s) | 234 |
| AsuHPI | GGTGA | 1 cut(s) | 611 |
| AsuNHI | GCTAGC | 3 cut(s) | 43, 280, 418 |
| BbsI | GAAGAC | 1 cut(s) | 335 |
| BbvI | GCAGC | 1 cut(s) | 479 |
| BccI | CCATC | 6 cut(s) | 8, 57, 215, 270, 331, 568 |
| BceAI | ACGGC | 1 cut(s) | 212 |
| BfaI | CTAG | 8 cut(s) | 44, 281, 308, 377, 419, 461, 477, 545 |
| BfmI | CTRYAG | 2 cut(s) | 56, 617 |
| BfuAI | ACCTGC | 1 cut(s) | 461 |
| BisI | GCNGC | 5 cut(s) | 99, 233, 285, 468, 614 |
| BlsI | GCNGC | 5 cut(s) | 100, 234, 286, 469, 615 |
| BmgT120I | GGNCC | 1 cut(s) | 234 |
| BmiI | GGNNCC | 1 cut(s) | 226 |
| BmrI | ACTGGG | 1 cut(s) | 526 |
| BmsI | GCATC | 2 cut(s) | 436, 454 |
| BmtI | GCTAGC | 3 cut(s) | 47, 284, 422 |
| BmuI | ACTGGG | 1 cut(s) | 526 |
| BpiI | GAAGAC | 1 cut(s) | 335 |
| BpuEI | CTTGAG | 1 cut(s) | 188 |
| BsaJI | CCNNGG | 1 cut(s) | 594 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 105, 276 |
| Bse1I | ACTGG | 2 cut(s) | 102, 521 |
| BseDI | CCNNGG | 1 cut(s) | 594 |
| BseGI | GGATG | 7 cut(s) | 19, 226, 281, 451, 487, 507, 579 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 105, 276 |
| BseNI | ACTGG | 2 cut(s) | 102, 521 |
| BseRI | GAGGAG | 1 cut(s) | 617 |
| BseXI | GCAGC | 1 cut(s) | 479 |
| Bsh1236I | CGCG | 1 cut(s) | 372 |
| BshFI | GGCC | 4 cut(s) | 235, 322, 551, 587 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 105, 276 |
| BsnI | GGCC | 4 cut(s) | 235, 322, 551, 587 |
| Bsp143I | GATC | 3 cut(s) | 3, 17, 409 |
| Bsp68I | TCGCGA | 1 cut(s) | 372 |
| BspACI | CCGC | 6 cut(s) | 41, 99, 119, 232, 284, 571 |
| BspANI | GGCC | 4 cut(s) | 235, 322, 551, 587 |
| BspFNI | CGCG | 1 cut(s) | 372 |
| BspLI | GGNNCC | 1 cut(s) | 226 |
| BspMAI | CTGCAG | 1 cut(s) | 60 |
| BspMI | ACCTGC | 1 cut(s) | 461 |
| BspOI | GCTAGC | 3 cut(s) | 47, 284, 422 |
| BspPI | GGATC | 1 cut(s) | 25 |
| BsrBI | CCGCTC | 1 cut(s) | 571 |
| BsrI | ACTGG | 2 cut(s) | 102, 521 |
| BssECI | CCNNGG | 1 cut(s) | 594 |
| BssMI | GATC | 3 cut(s) | 3, 17, 409 |
| BssT1I | CCWWGG | 1 cut(s) | 594 |
| Bst4CI | ACNGT | 1 cut(s) | 94 |
| BstC8I | GCNNGC | 5 cut(s) | 45, 56, 123, 282, 420 |
| BstF5I | GGATG | 7 cut(s) | 19, 226, 281, 451, 487, 507, 579 |
| BstFNI | CGCG | 1 cut(s) | 372 |
| BstKTI | GATC | 3 cut(s) | 6, 20, 412 |
| BstMBI | GATC | 3 cut(s) | 3, 17, 409 |
| BstNSI | RCATGY | 1 cut(s) | 304 |
| BstSFI | CTRYAG | 2 cut(s) | 56, 617 |
| BstUI | CGCG | 1 cut(s) | 372 |
| BstV1I | GCAGC | 1 cut(s) | 479 |
| BstV2I | GAAGAC | 1 cut(s) | 335 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 14 |
| BsuRI | GGCC | 4 cut(s) | 235, 322, 551, 587 |
| BtgZI | GCGATG | 1 cut(s) | 35 |
| BtsCI | GGATG | 7 cut(s) | 19, 226, 281, 451, 487, 507, 579 |
| BtsIMutI | CAGTG | 1 cut(s) | 109 |
| BtuMI | TCGCGA | 1 cut(s) | 372 |
| BveI | ACCTGC | 1 cut(s) | 461 |
| Cac8I | GCNNGC | 5 cut(s) | 45, 56, 123, 282, 420 |
| CaiI | CAGNNNCTG | 1 cut(s) | 26 |
| Cfr13I | GGNCC | 1 cut(s) | 234 |
| CviAII | CATG | 3 cut(s) | 83, 301, 581 |
| DpnI | GATC | 3 cut(s) | 5, 19, 411 |
| DpnII | GATC | 3 cut(s) | 3, 17, 409 |
| Eco130I | CCWWGG | 1 cut(s) | 594 |
| EcoT14I | CCWWGG | 1 cut(s) | 594 |
| ErhI | CCWWGG | 1 cut(s) | 594 |
| FaeI | CATG | 3 cut(s) | 86, 304, 584 |
| FaiI | YATR | 6 cut(s) | 84, 189, 302, 414, 416, 582 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 422, 454 |
| FatI | CATG | 3 cut(s) | 82, 300, 580 |
| FauNDI | CATATG | 1 cut(s) | 414 |
| Fnu4HI | GCNGC | 5 cut(s) | 99, 233, 285, 468, 614 |
| FokI | GGATG | 7 cut(s) | 26, 233, 288, 458, 494, 514, 586 |
| Fsp4HI | GCNGC | 5 cut(s) | 99, 233, 285, 468, 614 |
| FspBI | CTAG | 8 cut(s) | 44, 281, 308, 377, 419, 461, 477, 545 |
| GluI | GCNGC | 5 cut(s) | 99, 233, 285, 468, 614 |
| HaeIII | GGCC | 4 cut(s) | 235, 322, 551, 587 |
| Hin1II | CATG | 3 cut(s) | 86, 304, 584 |
| HindIII | AAGCTT | 1 cut(s) | 214 |
| HinfI | GANTC | 2 cut(s) | 37, 131 |
| HphI | GGTGA | 1 cut(s) | 611 |
| Hpy166II | GTNNAC | 1 cut(s) | 436 |
| Hpy188I | TCNGA | 1 cut(s) | 22 |
| Hpy188III | TCNNGA | 1 cut(s) | 371 |
| Hpy8I | GTNNAC | 1 cut(s) | 436 |
| Hpy99I | CGWCG | 1 cut(s) | 372 |
| HpyAV | CCTTC | 6 cut(s) | 103, 374, 418, 424, 446, 529 |
| HpyCH4III | ACNGT | 1 cut(s) | 94 |
| HpyCH4IV | ACGT | 1 cut(s) | 68 |
| HpyCH4V | TGCA | 3 cut(s) | 58, 449, 467 |
| HpySE526I | ACGT | 1 cut(s) | 68 |
| Hsp92II | CATG | 3 cut(s) | 86, 304, 584 |
| Kzo9I | GATC | 3 cut(s) | 3, 17, 409 |
| LmnI | GCTCC | 3 cut(s) | 154, 224, 538 |
| LpnPI | CCDG | 7 cut(s) | 39, 68, 107, 115, 174, 456, 502 |
| Lsp1109I | GCAGC | 1 cut(s) | 479 |
| LweI | GCATC | 2 cut(s) | 436, 454 |
| MaeI | CTAG | 8 cut(s) | 44, 281, 308, 377, 419, 461, 477, 545 |
| MaeII | ACGT | 1 cut(s) | 68 |
| MaeIII | GTNAC | 2 cut(s) | 88, 504 |
| MalI | GATC | 3 cut(s) | 5, 19, 411 |
| MbiI | CCGCTC | 1 cut(s) | 571 |
| MboI | GATC | 3 cut(s) | 3, 17, 409 |
| MboII | GAAGA | 3 cut(s) | 73, 246, 335 |
| MseI | TTAA | 1 cut(s) | 609 |
| MspA1I | CMGCKG | 2 cut(s) | 121, 616 |
| MvnI | CGCG | 1 cut(s) | 372 |
| NdeI | CATATG | 1 cut(s) | 414 |
| NdeII | GATC | 3 cut(s) | 3, 17, 409 |
| NheI | GCTAGC | 3 cut(s) | 43, 280, 418 |
| NlaIII | CATG | 3 cut(s) | 86, 304, 584 |
| NlaIV | GGNNCC | 1 cut(s) | 226 |
| NmuCI | GTSAC | 1 cut(s) | 504 |
| NruI | TCGCGA | 1 cut(s) | 372 |
| NspI | RCATGY | 1 cut(s) | 304 |
| PciI | ACATGT | 1 cut(s) | 300 |
| PfeI | GAWTC | 2 cut(s) | 37, 131 |
| PkrI | GCNGC | 5 cut(s) | 100, 234, 286, 469, 615 |
| PscI | ACATGT | 1 cut(s) | 300 |
| PspN4I | GGNNCC | 1 cut(s) | 226 |
| PspPI | GGNCC | 1 cut(s) | 234 |
| PstI | CTGCAG | 1 cut(s) | 60 |
| PstNI | CAGNNNCTG | 1 cut(s) | 26 |
| PvuII | CAGCTG | 1 cut(s) | 616 |
| RruI | TCGCGA | 1 cut(s) | 372 |
| SaqAI | TTAA | 1 cut(s) | 609 |
| SatI | GCNGC | 5 cut(s) | 99, 233, 285, 468, 614 |
| Sau3AI | GATC | 3 cut(s) | 3, 17, 409 |
| Sau96I | GGNCC | 1 cut(s) | 234 |
| SfaNI | GCATC | 2 cut(s) | 436, 454 |
| SfcI | CTRYAG | 2 cut(s) | 56, 617 |
| SmlI | CTYRAG | 1 cut(s) | 203 |
| SmoI | CTYRAG | 1 cut(s) | 203 |
| SsiI | CCGC | 6 cut(s) | 41, 99, 119, 232, 284, 571 |
| SspMI | CTAG | 8 cut(s) | 44, 281, 308, 377, 419, 461, 477, 545 |
| StyI | CCWWGG | 1 cut(s) | 594 |
| TaaI | ACNGT | 1 cut(s) | 94 |
| TaiI | ACGT | 1 cut(s) | 71 |
| TauI | GCSGC | 3 cut(s) | 101, 235, 287 |
| TfiI | GAWTC | 2 cut(s) | 37, 131 |
| Tru1I | TTAA | 1 cut(s) | 609 |
| Tru9I | TTAA | 1 cut(s) | 609 |
| TscAI | CASTG | 1 cut(s) | 109 |
| TseFI | GTSAC | 1 cut(s) | 504 |
| TseI | GCWGC | 2 cut(s) | 467, 613 |
| Tsp45I | GTSAC | 1 cut(s) | 504 |
| TspDTI | ATGAA | 2 cut(s) | 71, 246 |
| TspRI | CASTG | 1 cut(s) | 109 |
| XceI | RCATGY | 1 cut(s) | 304 |
| XspI | CTAG | 8 cut(s) | 44, 281, 308, 377, 419, 461, 477, 545 |