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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 619 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 629 |
| AccBSI | CCGCTC | 1 cut(s) | 506 |
| AccII | CGCG | 1 cut(s) | 429 |
| AcsI | RAATTY | 1 cut(s) | 445 |
| AcuI | CTGAAG | 2 cut(s) | 372, 628 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 201, 202, 369, 510, 629 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 347 |
| AjnI | CCWGG | 1 cut(s) | 481 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 283, 315 |
| AluBI | AGCT | 2 cut(s) | 288, 493 |
| AluI | AGCT | 2 cut(s) | 288, 493 |
| Alw26I | GTCTC | 1 cut(s) | 425 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 214 |
| AoxI | GGCC | 2 cut(s) | 32, 383 |
| ApaI | GGGCCC | 1 cut(s) | 36 |
| ApeKI | GCWGC | 3 cut(s) | 214, 514, 586 |
| ApoI | RAATTY | 1 cut(s) | 445 |
| AspLEI | GCGC | 2 cut(s) | 231, 429 |
| AspS9I | GGNCC | 5 cut(s) | 32, 33, 43, 192, 641 |
| AsuC2I | CCSGG | 1 cut(s) | 654 |
| AsuHPI | GGTGA | 3 cut(s) | 468, 585, 645 |
| AvaII | GGWCC | 3 cut(s) | 43, 192, 641 |
| BaeGI | GKGCMC | 2 cut(s) | 18, 36 |
| BanI | GGYRCC | 1 cut(s) | 619 |
| BanII | GRGCYC | 3 cut(s) | 36, 168, 410 |
| BbvI | GCAGC | 3 cut(s) | 201, 501, 573 |
| BccI | CCATC | 4 cut(s) | 166, 331, 558, 631 |
| BceAI | ACGGC | 1 cut(s) | 371 |
| BciT130I | CCWGG | 1 cut(s) | 483 |
| BcnI | CCSGG | 1 cut(s) | 654 |
| BcoDI | GTCTC | 1 cut(s) | 425 |
| BfaI | CTAG | 1 cut(s) | 487 |
| BfmI | CTRYAG | 1 cut(s) | 97 |
| BisI | GCNGC | 8 cut(s) | 109, 215, 440, 504, 515, 518, 587, 590 |
| BlsI | GCNGC | 8 cut(s) | 110, 216, 441, 505, 516, 519, 588, 591 |
| Bme1390I | CCNGG | 2 cut(s) | 483, 654 |
| Bme18I | GGWCC | 3 cut(s) | 43, 192, 641 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 347 |
| BmgT120I | GGNCC | 5 cut(s) | 32, 33, 43, 192, 641 |
| BmrFI | CCNGG | 2 cut(s) | 483, 654 |
| BmrI | ACTGGG | 1 cut(s) | 639 |
| BmsI | GCATC | 1 cut(s) | 402 |
| BmuI | ACTGGG | 1 cut(s) | 639 |
| BoxI | GACNNNNGTC | 1 cut(s) | 358 |
| BpmI | CTGGAG | 2 cut(s) | 310, 487 |
| BpuMI | CCSGG | 1 cut(s) | 654 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 283, 313 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 201, 202, 369, 510, 629 |
| Bse1I | ACTGG | 1 cut(s) | 634 |
| BseBI | CCWGG | 1 cut(s) | 483 |
| BseGI | GGATG | 2 cut(s) | 256, 342 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 201, 202, 369, 510, 629 |
| BseMII | CTCAG | 4 cut(s) | 257, 275, 485, 500 |
| BseNI | ACTGG | 1 cut(s) | 634 |
| BseRI | GAGGAG | 2 cut(s) | 151, 541 |
| BseSI | GKGCMC | 2 cut(s) | 18, 36 |
| BseXI | GCAGC | 3 cut(s) | 201, 501, 573 |
| BseYI | CCCAGC | 1 cut(s) | 318 |
| BsgI | GTGCAG | 1 cut(s) | 172 |
| Bsh1236I | CGCG | 1 cut(s) | 429 |
| BshFI | GGCC | 2 cut(s) | 34, 385 |
| BshNI | GGYRCC | 1 cut(s) | 619 |
| BsiSI | CCGG | 1 cut(s) | 653 |
| BslFI | GGGAC | 5 cut(s) | 56, 178, 219, 354, 627 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 201, 202, 369, 510, 629 |
| BsmAI | GTCTC | 1 cut(s) | 425 |
| BsmFI | GGGAC | 5 cut(s) | 56, 178, 219, 354, 627 |
| BsnI | GGCC | 2 cut(s) | 34, 385 |
| Bsp120I | GGGCCC | 1 cut(s) | 32 |
| Bsp1286I | GDGCHC | 4 cut(s) | 18, 36, 168, 410 |
| Bsp143I | GATC | 1 cut(s) | 81 |
| BspANI | GGCC | 2 cut(s) | 34, 385 |
| BspCNI | CTCAG | 4 cut(s) | 258, 276, 486, 501 |
| BspFNI | CGCG | 1 cut(s) | 429 |
| BspMAI | CTGCAG | 1 cut(s) | 101 |
| BspQI | GCTCTTC | 1 cut(s) | 493 |
| BspT107I | GGYRCC | 1 cut(s) | 619 |
| BsrBI | CCGCTC | 1 cut(s) | 506 |
| BsrI | ACTGG | 1 cut(s) | 634 |
| BssMI | GATC | 1 cut(s) | 81 |
| Bst2UI | CCWGG | 1 cut(s) | 483 |
| Bst4CI | ACNGT | 4 cut(s) | 79, 93, 210, 345 |
| Bst6I | CTCTTC | 5 cut(s) | 53, 128, 172, 454, 493 |
| BstC8I | GCNNGC | 2 cut(s) | 18, 557 |
| BstDEI | CTNAG | 5 cut(s) | 85, 266, 284, 494, 509 |
| BstF5I | GGATG | 2 cut(s) | 256, 342 |
| BstFNI | CGCG | 1 cut(s) | 429 |
| BstHHI | GCGC | 2 cut(s) | 231, 429 |
| BstKTI | GATC | 1 cut(s) | 84 |
| BstMAI | GTCTC | 1 cut(s) | 425 |
| BstMBI | GATC | 1 cut(s) | 81 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 105, 294, 577, 586 |
| BstNI | CCWGG | 1 cut(s) | 483 |
| BstNSI | RCATGY | 1 cut(s) | 606 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 358 |
| BstSCI | CCNGG | 2 cut(s) | 481, 652 |
| BstSFI | CTRYAG | 1 cut(s) | 97 |
| BstSLI | GKGCMC | 2 cut(s) | 18, 36 |
| BstUI | CGCG | 1 cut(s) | 429 |
| BstV1I | GCAGC | 3 cut(s) | 201, 501, 573 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 450 |
| BsuRI | GGCC | 2 cut(s) | 34, 385 |
| BtsCI | GGATG | 2 cut(s) | 256, 342 |
| BtsI | GCAGTG | 1 cut(s) | 527 |
| BtsIMutI | CAGTG | 3 cut(s) | 75, 215, 527 |
| Cac8I | GCNNGC | 2 cut(s) | 18, 557 |
| CaiI | CAGNNNCTG | 1 cut(s) | 214 |
| CfoI | GCGC | 2 cut(s) | 231, 429 |
| Cfr13I | GGNCC | 5 cut(s) | 32, 33, 43, 192, 641 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 10, 45 |
| CviAII | CATG | 4 cut(s) | 232, 412, 561, 603 |
| DdeI | CTNAG | 5 cut(s) | 85, 266, 284, 494, 509 |
| DpnI | GATC | 1 cut(s) | 83 |
| DpnII | GATC | 1 cut(s) | 81 |
| DraI | TTTAAA | 1 cut(s) | 534 |
| DriI | GACNNNNNGTC | 1 cut(s) | 347 |
| Eam1104I | CTCTTC | 5 cut(s) | 53, 128, 172, 454, 493 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 347 |
| EarI | CTCTTC | 5 cut(s) | 53, 128, 172, 454, 493 |
| Eco24I | GRGCYC | 3 cut(s) | 36, 168, 410 |
| Eco47I | GGWCC | 3 cut(s) | 43, 192, 641 |
| Eco57I | CTGAAG | 2 cut(s) | 372, 628 |
| EcoO109I | RGGNCCY | 3 cut(s) | 33, 192, 641 |
| EcoRII | CCWGG | 1 cut(s) | 481 |
| EcoT38I | GRGCYC | 3 cut(s) | 36, 168, 410 |
| FaeI | CATG | 4 cut(s) | 235, 415, 564, 606 |
| FaiI | YATR | 7 cut(s) | 233, 263, 413, 437, 551, 562, 604 |
| FaqI | GGGAC | 5 cut(s) | 56, 178, 219, 354, 627 |
| FatI | CATG | 4 cut(s) | 231, 411, 560, 602 |
| FauI | CCCGC | 1 cut(s) | 25 |
| Fnu4HI | GCNGC | 8 cut(s) | 109, 215, 440, 504, 515, 518, 587, 590 |
| FokI | GGATG | 2 cut(s) | 243, 349 |
| FriOI | GRGCYC | 3 cut(s) | 36, 168, 410 |
| Fsp4HI | GCNGC | 8 cut(s) | 109, 215, 440, 504, 515, 518, 587, 590 |
| FspBI | CTAG | 1 cut(s) | 487 |
| GlaI | GCGC | 2 cut(s) | 230, 428 |
| GluI | GCNGC | 8 cut(s) | 109, 215, 440, 504, 515, 518, 587, 590 |
| GsaI | CCCAGC | 1 cut(s) | 322 |
| GsuI | CTGGAG | 2 cut(s) | 310, 487 |
| HaeIII | GGCC | 2 cut(s) | 34, 385 |
| HapII | CCGG | 1 cut(s) | 653 |
| HhaI | GCGC | 2 cut(s) | 231, 429 |
| Hin1II | CATG | 4 cut(s) | 235, 415, 564, 606 |
| Hin6I | GCGC | 2 cut(s) | 229, 427 |
| HinP1I | GCGC | 2 cut(s) | 229, 427 |
| HinfI | GANTC | 4 cut(s) | 121, 247, 280, 348 |
| HpaII | CCGG | 1 cut(s) | 653 |
| HphI | GGTGA | 3 cut(s) | 468, 585, 645 |
| Hpy188I | TCNGA | 8 cut(s) | 126, 163, 200, 275, 285, 328, 353, 510 |
| Hpy99I | CGWCG | 1 cut(s) | 357 |
| HpyAV | CCTTC | 6 cut(s) | 33, 195, 261, 396, 570, 609 |
| HpyCH4III | ACNGT | 4 cut(s) | 79, 93, 210, 345 |
| HpyCH4V | TGCA | 2 cut(s) | 99, 153 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 105, 294, 577, 586 |
| HpyF3I | CTNAG | 5 cut(s) | 85, 266, 284, 494, 509 |
| Hsp92II | CATG | 4 cut(s) | 235, 415, 564, 606 |
| HspAI | GCGC | 2 cut(s) | 229, 427 |
| KflI | GGGWCCC | 1 cut(s) | 641 |
| Kzo9I | GATC | 1 cut(s) | 81 |
| LguI | GCTCTTC | 1 cut(s) | 493 |
| LmnI | GCTCC | 2 cut(s) | 163, 413 |
| Lsp1109I | GCAGC | 3 cut(s) | 201, 501, 573 |
| LweI | GCATC | 1 cut(s) | 402 |
| MaeI | CTAG | 1 cut(s) | 487 |
| MaeIII | GTNAC | 1 cut(s) | 70 |
| MalI | GATC | 1 cut(s) | 83 |
| MbiI | CCGCTC | 1 cut(s) | 506 |
| MboI | GATC | 1 cut(s) | 81 |
| MboII | GAAGA | 7 cut(s) | 70, 142, 145, 154, 189, 471, 510 |
| MhlI | GDGCHC | 4 cut(s) | 18, 36, 168, 410 |
| MluCI | AATT | 2 cut(s) | 445, 538 |
| MlyI | GAGTC | 3 cut(s) | 115, 274, 357 |
| MmeI | TCCRAC | 2 cut(s) | 376, 387 |
| MseI | TTAA | 1 cut(s) | 533 |
| MspA1I | CMGCKG | 1 cut(s) | 27 |
| MspI | CCGG | 1 cut(s) | 653 |
| MspR9I | CCNGG | 2 cut(s) | 483, 654 |
| MssI | GTTTAAAC | 1 cut(s) | 534 |
| MvaI | CCWGG | 1 cut(s) | 483 |
| MvnI | CGCG | 1 cut(s) | 429 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 105, 294, 577, 586 |
| NciI | CCSGG | 1 cut(s) | 654 |
| NdeII | GATC | 1 cut(s) | 81 |
| NlaIII | CATG | 4 cut(s) | 235, 415, 564, 606 |
| NspI | RCATGY | 1 cut(s) | 606 |
| PciSI | GCTCTTC | 1 cut(s) | 493 |
| PfeI | GAWTC | 1 cut(s) | 247 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 629 |
| PkrI | GCNGC | 8 cut(s) | 110, 216, 441, 505, 516, 519, 588, 591 |
| PleI | GAGTC | 3 cut(s) | 115, 274, 356 |
| PmeI | GTTTAAAC | 1 cut(s) | 534 |
| PpsI | GAGTC | 3 cut(s) | 115, 274, 356 |
| PpuMI | RGGWCCY | 2 cut(s) | 192, 641 |
| PshAI | GACNNNNGTC | 1 cut(s) | 358 |
| Psp5II | RGGWCCY | 2 cut(s) | 192, 641 |
| Psp6I | CCWGG | 1 cut(s) | 481 |
| PspFI | CCCAGC | 1 cut(s) | 318 |
| PspGI | CCWGG | 1 cut(s) | 481 |
| PspOMI | GGGCCC | 1 cut(s) | 32 |
| PspPI | GGNCC | 5 cut(s) | 32, 33, 43, 192, 641 |
| PspPPI | RGGWCCY | 2 cut(s) | 192, 641 |
| PstI | CTGCAG | 1 cut(s) | 101 |
| PstNI | CAGNNNCTG | 1 cut(s) | 214 |
| SapI | GCTCTTC | 1 cut(s) | 493 |
| SaqAI | TTAA | 1 cut(s) | 533 |
| SatI | GCNGC | 8 cut(s) | 109, 215, 440, 504, 515, 518, 587, 590 |
| Sau3AI | GATC | 1 cut(s) | 81 |
| Sau96I | GGNCC | 5 cut(s) | 32, 33, 43, 192, 641 |
| SchI | GAGTC | 3 cut(s) | 115, 274, 357 |
| ScrFI | CCNGG | 2 cut(s) | 483, 654 |
| SduI | GDGCHC | 4 cut(s) | 18, 36, 168, 410 |
| SetI | ASST | 6 cut(s) | 194, 290, 308, 458, 479, 495 |
| SfaNI | GCATC | 1 cut(s) | 402 |
| SfcI | CTRYAG | 1 cut(s) | 97 |
| SinI | GGWCC | 3 cut(s) | 43, 192, 641 |
| Sse9I | AATT | 2 cut(s) | 445, 538 |
| SspMI | CTAG | 1 cut(s) | 487 |
| StyD4I | CCNGG | 2 cut(s) | 481, 652 |
| TaaI | ACNGT | 4 cut(s) | 79, 93, 210, 345 |
| TaqI | TCGA | 1 cut(s) | 626 |
| TaqII | GACCGA | 1 cut(s) | 60 |
| TasI | AATT | 2 cut(s) | 445, 538 |
| TauI | GCSGC | 5 cut(s) | 111, 442, 506, 520, 592 |
| TfiI | GAWTC | 1 cut(s) | 247 |
| Tru1I | TTAA | 1 cut(s) | 533 |
| Tru9I | TTAA | 1 cut(s) | 533 |
| TscAI | CASTG | 3 cut(s) | 82, 215, 527 |
| TseI | GCWGC | 3 cut(s) | 214, 514, 586 |
| TspDTI | ATGAA | 1 cut(s) | 143 |
| TspRI | CASTG | 3 cut(s) | 82, 215, 527 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 629 |
| VpaK11BI | GGWCC | 3 cut(s) | 43, 192, 641 |
| XapI | RAATTY | 1 cut(s) | 445 |
| XceI | RCATGY | 1 cut(s) | 606 |
| XspI | CTAG | 1 cut(s) | 487 |