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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1911 |
| AccB1I | GGYRCC | 8 cut(s) | 179, 239, 881, 1069, 1633, 2231, 2321, 2486 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 705, 1938 |
| AccBSI | CCGCTC | 2 cut(s) | 1696, 2002 |
| AccI | GTMKAC | 1 cut(s) | 891 |
| AclI | AACGTT | 1 cut(s) | 555 |
| AclWI | GGATC | 1 cut(s) | 1147 |
| AcoI | YGGCCR | 4 cut(s) | 1390, 1881, 1929, 2124 |
| AcsI | RAATTY | 1 cut(s) | 2159 |
| AcuI | CTGAAG | 4 cut(s) | 450, 1768, 2240, 2580 |
| AcvI | CACGTG | 3 cut(s) | 305, 1938, 2450 |
| AcyI | GRCGYC | 3 cut(s) | 1634, 1908, 2232 |
| AfaI | GTAC | 2 cut(s) | 1184, 2116 |
| AfeI | AGCGCT | 1 cut(s) | 1357 |
| AflIII | ACRYGT | 4 cut(s) | 302, 304, 594, 1960 |
| AgsI | TTSAA | 2 cut(s) | 2108, 2146 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 284 |
| AjiI | CACGTC | 1 cut(s) | 595 |
| AjnI | CCWGG | 6 cut(s) | 54, 465, 704, 1108, 1387, 2475 |
| AleI | CACNNNNGTG | 1 cut(s) | 1398 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1691, 1723 |
| Alw21I | GWGCWC | 2 cut(s) | 746, 2353 |
| Alw26I | GTCTC | 9 cut(s) | 37, 98, 155, 215, 243, 419, 1969, 2288, 2489 |
| AlwI | GGATC | 1 cut(s) | 1147 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1234 |
| Aor51HI | AGCGCT | 1 cut(s) | 1357 |
| ApaI | GGGCCC | 2 cut(s) | 1576, 2200 |
| ApoI | RAATTY | 1 cut(s) | 2159 |
| AsuC2I | CCSGG | 3 cut(s) | 586, 957, 2194 |
| AsuII | TTCGAA | 1 cut(s) | 1607 |
| AsuNHI | GCTAGC | 1 cut(s) | 812 |
| AvaII | GGWCC | 4 cut(s) | 1479, 2367, 2409, 2520 |
| AxyI | CCTNAGG | 2 cut(s) | 1088, 2099 |
| BaeGI | GKGCMC | 3 cut(s) | 1576, 2200, 2326 |
| BalI | TGGCCA | 3 cut(s) | 1392, 1883, 1931 |
| BanI | GGYRCC | 8 cut(s) | 179, 239, 881, 1069, 1633, 2231, 2321, 2486 |
| BanII | GRGCYC | 4 cut(s) | 746, 962, 1576, 2200 |
| BbrPI | CACGTG | 3 cut(s) | 305, 1938, 2450 |
| Bbv12I | GWGCWC | 2 cut(s) | 746, 2353 |
| BceAI | ACGGC | 5 cut(s) | 1010, 1625, 1739, 1779, 2249 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 871, 905 |
| BciT130I | CCWGG | 6 cut(s) | 56, 467, 706, 1110, 1389, 2477 |
| BciVI | GTATCC | 1 cut(s) | 2294 |
| BcnI | CCSGG | 3 cut(s) | 586, 957, 2194 |
| BcoDI | GTCTC | 9 cut(s) | 37, 98, 155, 215, 243, 419, 1969, 2288, 2489 |
| BfaI | CTAG | 4 cut(s) | 677, 747, 777, 813 |
| BfmI | CTRYAG | 3 cut(s) | 692, 1359, 1994 |
| BfoI | RGCGCY | 3 cut(s) | 1359, 1637, 2235 |
| BfuI | GTATCC | 1 cut(s) | 2294 |
| BlpI | GCTNAGC | 5 cut(s) | 36, 97, 154, 214, 1241 |
| Bme1390I | CCNGG | 9 cut(s) | 56, 467, 586, 706, 957, 1110, 1389, 2194, 2477 |
| Bme18I | GGWCC | 4 cut(s) | 1479, 2367, 2409, 2520 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 284 |
| BmgBI | CACGTC | 1 cut(s) | 595 |
| BmrFI | CCNGG | 9 cut(s) | 56, 467, 586, 706, 957, 1110, 1389, 2194, 2477 |
| BmsI | GCATC | 1 cut(s) | 1374 |
| BmtI | GCTAGC | 1 cut(s) | 816 |
| BoxI | GACNNNNGTC | 1 cut(s) | 305 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1044, 1076, 1640, 1672 |
| BpmI | CTGGAG | 3 cut(s) | 77, 2099, 2337 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1448 |
| Bpu1102I | GCTNAGC | 5 cut(s) | 36, 97, 154, 214, 1241 |
| Bpu14I | TTCGAA | 1 cut(s) | 1607 |
| BpuMI | CCSGG | 3 cut(s) | 586, 957, 2194 |
| Bsa29I | ATCGAT | 1 cut(s) | 2540 |
| BsaAI | YACGTR | 3 cut(s) | 305, 1938, 2450 |
| BsaHI | GRCGYC | 3 cut(s) | 1634, 1908, 2232 |
| BsaI | GGTCTC | 1 cut(s) | 2489 |
| BsaWI | WCCGGW | 2 cut(s) | 948, 1258 |
| Bse118I | RCCGGY | 4 cut(s) | 1426, 1462, 1518, 2272 |
| Bse1I | ACTGG | 4 cut(s) | 1221, 1246, 1282, 1863 |
| Bse21I | CCTNAGG | 2 cut(s) | 1088, 2099 |
| BseBI | CCWGG | 6 cut(s) | 56, 467, 706, 1110, 1389, 2477 |
| BseCI | ATCGAT | 1 cut(s) | 2540 |
| BseGI | GGATG | 9 cut(s) | 389, 552, 699, 883, 915, 994, 1306, 2353, 2488 |
| BseNI | ACTGG | 4 cut(s) | 1221, 1246, 1282, 1863 |
| BseRI | GAGGAG | 3 cut(s) | 335, 397, 1568 |
| BseSI | GKGCMC | 3 cut(s) | 1576, 2200, 2326 |
| BseX3I | CGGCCG | 1 cut(s) | 2124 |
| BsgI | GTGCAG | 4 cut(s) | 1262, 1337, 1802, 2057 |
| Bsh1285I | CGRYCG | 3 cut(s) | 482, 2127, 2540 |
| BshNI | GGYRCC | 8 cut(s) | 179, 239, 881, 1069, 1633, 2231, 2321, 2486 |
| BshVI | ATCGAT | 1 cut(s) | 2540 |
| BsiEI | CGRYCG | 3 cut(s) | 482, 2127, 2540 |
| BsiHKAI | GWGCWC | 2 cut(s) | 746, 2353 |
| BslFI | GGGAC | 9 cut(s) | 858, 1188, 1270, 1339, 1827, 1955, 2239, 2353, 2395 |
| BsmAI | GTCTC | 9 cut(s) | 37, 98, 155, 215, 243, 419, 1969, 2288, 2489 |
| BsmBI | CGTCTC | 1 cut(s) | 1969 |
| BsmFI | GGGAC | 9 cut(s) | 858, 1188, 1270, 1339, 1827, 1955, 2239, 2353, 2395 |
| BsmI | GAATGC | 2 cut(s) | 67, 856 |
| Bso31I | GGTCTC | 1 cut(s) | 2489 |
| Bsp119I | TTCGAA | 1 cut(s) | 1607 |
| Bsp120I | GGGCCC | 2 cut(s) | 1572, 2196 |
| Bsp1286I | GDGCHC | 6 cut(s) | 746, 962, 1576, 2200, 2326, 2353 |
| Bsp143I | GATC | 6 cut(s) | 600, 1139, 1566, 1983, 2524, 2537 |
| Bsp1720I | GCTNAGC | 5 cut(s) | 36, 97, 154, 214, 1241 |
| BspDI | ATCGAT | 1 cut(s) | 2540 |
| BspHI | TCATGA | 2 cut(s) | 1030, 1680 |
| BspMAI | CTGCAG | 2 cut(s) | 1363, 1998 |
| BspOI | GCTAGC | 1 cut(s) | 816 |
| BspPI | GGATC | 1 cut(s) | 1147 |
| BspT104I | TTCGAA | 1 cut(s) | 1607 |
| BspT107I | GGYRCC | 8 cut(s) | 179, 239, 881, 1069, 1633, 2231, 2321, 2486 |
| BspTNI | GGTCTC | 1 cut(s) | 2489 |
| BsrBI | CCGCTC | 2 cut(s) | 1696, 2002 |
| BsrFI | RCCGGY | 4 cut(s) | 1426, 1462, 1518, 2272 |
| BsrI | ACTGG | 4 cut(s) | 1221, 1246, 1282, 1863 |
| BssAI | RCCGGY | 4 cut(s) | 1426, 1462, 1518, 2272 |
| BssMI | GATC | 6 cut(s) | 600, 1139, 1566, 1983, 2524, 2537 |
| BssNI | GRCGYC | 3 cut(s) | 1634, 1908, 2232 |
| BssT1I | CCWWGG | 9 cut(s) | 5, 66, 114, 171, 183, 231, 1048, 1884, 2013 |
| Bst2UI | CCWGG | 6 cut(s) | 56, 467, 706, 1110, 1389, 2477 |
| Bst4CI | ACNGT | 4 cut(s) | 397, 462, 1444, 1615 |
| Bst6I | CTCTTC | 3 cut(s) | 1197, 1539, 2103 |
| BstACI | GRCGYC | 3 cut(s) | 1634, 1908, 2232 |
| BstBAI | YACGTR | 3 cut(s) | 305, 1938, 2450 |
| BstBI | TTCGAA | 1 cut(s) | 1607 |
| BstDSI | CCRYGG | 3 cut(s) | 1761, 1912, 2118 |
| BstEII | GGTNACC | 2 cut(s) | 951, 2089 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1994 |
| BstF5I | GGATG | 9 cut(s) | 389, 552, 699, 883, 915, 994, 1306, 2353, 2488 |
| BstH2I | RGCGCY | 3 cut(s) | 1359, 1637, 2235 |
| BstKTI | GATC | 6 cut(s) | 603, 1142, 1569, 1986, 2527, 2540 |
| BstMAI | GTCTC | 9 cut(s) | 37, 98, 155, 215, 243, 419, 1969, 2288, 2489 |
| BstMBI | GATC | 6 cut(s) | 600, 1139, 1566, 1983, 2524, 2537 |
| BstMCI | CGRYCG | 3 cut(s) | 482, 2127, 2540 |
| BstNI | CCWGG | 6 cut(s) | 56, 467, 706, 1110, 1389, 2477 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 305 |
| BstPI | GGTNACC | 2 cut(s) | 951, 2089 |
| BstSCI | CCNGG | 9 cut(s) | 54, 465, 584, 704, 955, 1108, 1387, 2192, 2475 |
| BstSFI | CTRYAG | 3 cut(s) | 692, 1359, 1994 |
| BstSLI | GKGCMC | 3 cut(s) | 1576, 2200, 2326 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1400 |
| BstZI | CGGCCG | 1 cut(s) | 2124 |
| Bsu15I | ATCGAT | 1 cut(s) | 2540 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1088, 2099 |
| BsuI | GTATCC | 1 cut(s) | 2294 |
| BsuTUI | ATCGAT | 1 cut(s) | 2540 |
| BtgI | CCRYGG | 3 cut(s) | 1761, 1912, 2118 |
| BtgZI | GCGATG | 2 cut(s) | 798, 2186 |
| BtrI | CACGTC | 1 cut(s) | 595 |
| BtsCI | GGATG | 9 cut(s) | 389, 552, 699, 883, 915, 994, 1306, 2353, 2488 |
| BtsI | GCAGTG | 2 cut(s) | 580, 662 |
| BtsIMutI | CAGTG | 6 cut(s) | 267, 580, 662, 969, 1214, 1440 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1234 |
| CciI | TCATGA | 2 cut(s) | 1030, 1680 |
| CciNI | GCGGCCGC | 1 cut(s) | 2124 |
| Cfr10I | RCCGGY | 4 cut(s) | 1426, 1462, 1518, 2272 |
| Cfr42I | CCGCGG | 2 cut(s) | 1915, 2121 |
| ClaI | ATCGAT | 1 cut(s) | 2540 |
| CseI | GACGC | 6 cut(s) | 288, 626, 722, 1240, 1951, 2241 |
| Csp6I | GTAC | 2 cut(s) | 1183, 2115 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 517, 552, 1750, 1785 |
| CviAII | CATG | 4 cut(s) | 650, 1031, 1105, 1681 |
| CviQI | GTAC | 2 cut(s) | 1183, 2115 |
| DinI | GGCGCC | 2 cut(s) | 1635, 2233 |
| DpnI | GATC | 6 cut(s) | 602, 1141, 1568, 1985, 2526, 2539 |
| DpnII | GATC | 6 cut(s) | 600, 1139, 1566, 1983, 2524, 2537 |
| DriI | GACNNNNNGTC | 1 cut(s) | 284 |
| EaeI | YGGCCR | 4 cut(s) | 1390, 1881, 1929, 2124 |
| EagI | CGGCCG | 1 cut(s) | 2124 |
| Eam1104I | CTCTTC | 3 cut(s) | 1197, 1539, 2103 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 284 |
| EarI | CTCTTC | 3 cut(s) | 1197, 1539, 2103 |
| Ecl136II | GAGCTC | 1 cut(s) | 744 |
| EclXI | CGGCCG | 1 cut(s) | 2124 |
| Eco130I | CCWWGG | 9 cut(s) | 5, 66, 114, 171, 183, 231, 1048, 1884, 2013 |
| Eco24I | GRGCYC | 4 cut(s) | 746, 962, 1576, 2200 |
| Eco31I | GGTCTC | 1 cut(s) | 2489 |
| Eco47I | GGWCC | 4 cut(s) | 1479, 2367, 2409, 2520 |
| Eco47III | AGCGCT | 1 cut(s) | 1357 |
| Eco52I | CGGCCG | 1 cut(s) | 2124 |
| Eco53kI | GAGCTC | 1 cut(s) | 744 |
| Eco57I | CTGAAG | 4 cut(s) | 450, 1768, 2240, 2580 |
| Eco72I | CACGTG | 3 cut(s) | 305, 1938, 2450 |
| Eco81I | CCTNAGG | 2 cut(s) | 1088, 2099 |
| Eco91I | GGTNACC | 2 cut(s) | 951, 2089 |
| EcoICRI | GAGCTC | 1 cut(s) | 744 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1994 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1572, 2196, 2367, 2409 |
| EcoO65I | GGTNACC | 2 cut(s) | 951, 2089 |
| EcoRII | CCWGG | 6 cut(s) | 54, 465, 704, 1108, 1387, 2475 |
| EcoT14I | CCWWGG | 9 cut(s) | 5, 66, 114, 171, 183, 231, 1048, 1884, 2013 |
| EcoT38I | GRGCYC | 4 cut(s) | 746, 962, 1576, 2200 |
| EgeI | GGCGCC | 2 cut(s) | 1635, 2233 |
| EheI | GGCGCC | 2 cut(s) | 1635, 2233 |
| ErhI | CCWWGG | 9 cut(s) | 5, 66, 114, 171, 183, 231, 1048, 1884, 2013 |
| Esp3I | CGTCTC | 1 cut(s) | 1969 |
| FaeI | CATG | 4 cut(s) | 653, 1034, 1108, 1684 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 236, 268 |
| FaqI | GGGAC | 9 cut(s) | 858, 1188, 1270, 1339, 1827, 1955, 2239, 2353, 2395 |
| FatI | CATG | 4 cut(s) | 649, 1030, 1104, 1680 |
| FblI | GTMKAC | 1 cut(s) | 891 |
| FokI | GGATG | 9 cut(s) | 376, 559, 686, 890, 922, 1001, 1313, 2340, 2495 |
| FriOI | GRGCYC | 4 cut(s) | 746, 962, 1576, 2200 |
| FspBI | CTAG | 4 cut(s) | 677, 747, 777, 813 |
| GsuI | CTGGAG | 3 cut(s) | 77, 2099, 2337 |
| HaeII | RGCGCY | 3 cut(s) | 1359, 1637, 2235 |
| HgaI | GACGC | 6 cut(s) | 288, 626, 722, 1240, 1951, 2241 |
| Hin1I | GRCGYC | 3 cut(s) | 1634, 1908, 2232 |
| Hin1II | CATG | 4 cut(s) | 653, 1034, 1108, 1684 |
| HincII | GTYRAC | 4 cut(s) | 300, 337, 892, 928 |
| HindII | GTYRAC | 4 cut(s) | 300, 337, 892, 928 |
| HindIII | AAGCTT | 1 cut(s) | 2024 |
| HpaI | GTTAAC | 1 cut(s) | 928 |
| Hpy166II | GTNNAC | 6 cut(s) | 300, 337, 505, 892, 928, 1185 |
| Hpy188I | TCNGA | 7 cut(s) | 278, 424, 592, 877, 1252, 2440, 2524 |
| Hpy188III | TCNNGA | 4 cut(s) | 737, 1031, 1087, 1681 |
| Hpy8I | GTNNAC | 6 cut(s) | 300, 337, 505, 892, 928, 1185 |
| Hpy99I | CGWCG | 2 cut(s) | 480, 896 |
| HpyCH4III | ACNGT | 4 cut(s) | 397, 462, 1444, 1615 |
| HpyCH4IV | ACGT | 8 cut(s) | 304, 555, 594, 944, 1908, 1926, 1937, 2449 |
| HpyCH4V | TGCA | 7 cut(s) | 653, 1279, 1318, 1361, 1819, 1996, 2038 |
| HpySE526I | ACGT | 8 cut(s) | 304, 555, 594, 944, 1908, 1926, 1937, 2449 |
| Hsp92I | GRCGYC | 3 cut(s) | 1634, 1908, 2232 |
| Hsp92II | CATG | 4 cut(s) | 653, 1034, 1108, 1684 |
| KasI | GGCGCC | 2 cut(s) | 1633, 2231 |
| KflI | GGGWCCC | 2 cut(s) | 2367, 2409 |
| KroI | GCCGGC | 2 cut(s) | 1518, 2272 |
| KroNI | GCCGGC | 2 cut(s) | 1520, 2274 |
| KspAI | GTTAAC | 1 cut(s) | 928 |
| KspI | CCGCGG | 2 cut(s) | 1915, 2121 |
| Kzo9I | GATC | 6 cut(s) | 600, 1139, 1566, 1983, 2524, 2537 |
| LweI | GCATC | 1 cut(s) | 1374 |
| MaeI | CTAG | 4 cut(s) | 677, 747, 777, 813 |
| MaeII | ACGT | 8 cut(s) | 304, 555, 594, 944, 1908, 1926, 1937, 2449 |
| MaeIII | GTNAC | 9 cut(s) | 50, 265, 951, 1054, 1438, 1471, 1895, 2089, 2445 |
| MalI | GATC | 6 cut(s) | 602, 1141, 1568, 1985, 2526, 2539 |
| MbiI | CCGCTC | 2 cut(s) | 1696, 2002 |
| MboI | GATC | 6 cut(s) | 600, 1139, 1566, 1983, 2524, 2537 |
| MfeI | CAATTG | 1 cut(s) | 1767 |
| MhlI | GDGCHC | 6 cut(s) | 746, 962, 1576, 2200, 2326, 2353 |
| MlsI | TGGCCA | 3 cut(s) | 1392, 1883, 1931 |
| MluCI | AATT | 3 cut(s) | 311, 1767, 2159 |
| MluI | ACGCGT | 1 cut(s) | 1960 |
| MluNI | TGGCCA | 3 cut(s) | 1392, 1883, 1931 |
| Mly113I | GGCGCC | 2 cut(s) | 1634, 2232 |
| MlyI | GAGTC | 7 cut(s) | 866, 1321, 1649, 2054, 2371, 2413, 2542 |
| MmeI | TCCRAC | 4 cut(s) | 1127, 1179, 1485, 1953 |
| Mox20I | TGGCCA | 3 cut(s) | 1392, 1883, 1931 |
| MroNI | GCCGGC | 2 cut(s) | 1518, 2272 |
| MscI | TGGCCA | 3 cut(s) | 1392, 1883, 1931 |
| MseI | TTAA | 2 cut(s) | 927, 2163 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1293, 1398, 2213 |
| Msp20I | TGGCCA | 3 cut(s) | 1392, 1883, 1931 |
| MspR9I | CCNGG | 9 cut(s) | 56, 467, 586, 706, 957, 1110, 1389, 2194, 2477 |
| MunI | CAATTG | 1 cut(s) | 1767 |
| Mva1269I | GAATGC | 2 cut(s) | 67, 856 |
| MvaI | CCWGG | 6 cut(s) | 56, 467, 706, 1110, 1389, 2477 |
| NaeI | GCCGGC | 2 cut(s) | 1520, 2274 |
| NarI | GGCGCC | 2 cut(s) | 1634, 2232 |
| NciI | CCSGG | 3 cut(s) | 586, 957, 2194 |
| NdeII | GATC | 6 cut(s) | 600, 1139, 1566, 1983, 2524, 2537 |
| NgoMIV | GCCGGC | 2 cut(s) | 1518, 2272 |
| NheI | GCTAGC | 1 cut(s) | 812 |
| NlaIII | CATG | 4 cut(s) | 653, 1034, 1108, 1684 |
| NmeAIII | GCCGAG | 3 cut(s) | 1564, 1690, 1769 |
| NmuCI | GTSAC | 6 cut(s) | 50, 1054, 1438, 1471, 1895, 2445 |
| NotI | GCGGCCGC | 1 cut(s) | 2124 |
| NspV | TTCGAA | 1 cut(s) | 1607 |
| OliI | CACNNNNGTG | 1 cut(s) | 1398 |
| PagI | TCATGA | 2 cut(s) | 1030, 1680 |
| PasI | CCCWGGG | 1 cut(s) | 705 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 638, 730 |
| PctI | GAATGC | 2 cut(s) | 67, 856 |
| PdiI | GCCGGC | 2 cut(s) | 1520, 2274 |
| PfeI | GAWTC | 5 cut(s) | 364, 581, 629, 1003, 1529 |
| PflFI | GACNNNGTC | 4 cut(s) | 48, 109, 166, 226 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 705, 1938 |
| PfoI | TCCNGGA | 1 cut(s) | 465 |
| Ple19I | CGATCG | 1 cut(s) | 2540 |
| PleI | GAGTC | 7 cut(s) | 865, 1321, 1649, 2053, 2371, 2413, 2541 |
| PluTI | GGCGCC | 2 cut(s) | 1637, 2235 |
| PmaCI | CACGTG | 3 cut(s) | 305, 1938, 2450 |
| PmlI | CACGTG | 3 cut(s) | 305, 1938, 2450 |
| PpsI | GAGTC | 7 cut(s) | 865, 1321, 1649, 2053, 2371, 2413, 2541 |
| Ppu21I | YACGTR | 3 cut(s) | 305, 1938, 2450 |
| PpuMI | RGGWCCY | 2 cut(s) | 2367, 2409 |
| PshAI | GACNNNNGTC | 1 cut(s) | 305 |
| Psp124BI | GAGCTC | 1 cut(s) | 746 |
| Psp1406I | AACGTT | 1 cut(s) | 555 |
| Psp5II | RGGWCCY | 2 cut(s) | 2367, 2409 |
| Psp6I | CCWGG | 6 cut(s) | 54, 465, 704, 1108, 1387, 2475 |
| PspCI | CACGTG | 3 cut(s) | 305, 1938, 2450 |
| PspEI | GGTNACC | 2 cut(s) | 951, 2089 |
| PspGI | CCWGG | 6 cut(s) | 54, 465, 704, 1108, 1387, 2475 |
| PspOMI | GGGCCC | 2 cut(s) | 1572, 2196 |
| PspPPI | RGGWCCY | 2 cut(s) | 2367, 2409 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1661, 1693 |
| PstI | CTGCAG | 2 cut(s) | 1363, 1998 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1234 |
| PsyI | GACNNNGTC | 4 cut(s) | 48, 109, 166, 226 |
| PvuI | CGATCG | 1 cut(s) | 2540 |
| PvuII | CAGCTG | 1 cut(s) | 1364 |
| RsaI | GTAC | 2 cut(s) | 1184, 2116 |
| RsaNI | GTAC | 2 cut(s) | 1183, 2115 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1293, 1398, 2213 |
| SacI | GAGCTC | 1 cut(s) | 746 |
| SacII | CCGCGG | 2 cut(s) | 1915, 2121 |
| SalI | GTCGAC | 1 cut(s) | 890 |
| SaqAI | TTAA | 2 cut(s) | 927, 2163 |
| Sau3AI | GATC | 6 cut(s) | 600, 1139, 1566, 1983, 2524, 2537 |
| SchI | GAGTC | 7 cut(s) | 866, 1321, 1649, 2054, 2371, 2413, 2542 |
| ScrFI | CCNGG | 9 cut(s) | 56, 467, 586, 706, 957, 1110, 1389, 2194, 2477 |
| SduI | GDGCHC | 6 cut(s) | 746, 962, 1576, 2200, 2326, 2353 |
| SfaNI | GCATC | 1 cut(s) | 1374 |
| SfcI | CTRYAG | 3 cut(s) | 692, 1359, 1994 |
| SfoI | GGCGCC | 2 cut(s) | 1635, 2233 |
| Sfr303I | CCGCGG | 2 cut(s) | 1915, 2121 |
| SfuI | TTCGAA | 1 cut(s) | 1607 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1462 |
| SgrBI | CCGCGG | 2 cut(s) | 1915, 2121 |
| SinI | GGWCC | 4 cut(s) | 1479, 2367, 2409, 2520 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1293, 1398, 2213 |
| Sse9I | AATT | 3 cut(s) | 311, 1767, 2159 |
| SspDI | GGCGCC | 2 cut(s) | 1633, 2231 |
| SspMI | CTAG | 4 cut(s) | 677, 747, 777, 813 |
| SstI | GAGCTC | 1 cut(s) | 746 |
| StyD4I | CCNGG | 9 cut(s) | 54, 465, 584, 704, 955, 1108, 1387, 2192, 2475 |
| StyI | CCWWGG | 9 cut(s) | 5, 66, 114, 171, 183, 231, 1048, 1884, 2013 |
| TaaI | ACNGT | 4 cut(s) | 397, 462, 1444, 1615 |
| TaiI | ACGT | 8 cut(s) | 307, 558, 597, 947, 1911, 1929, 1940, 2452 |
| TaqII | GACCGA | 1 cut(s) | 2078 |
| TasI | AATT | 3 cut(s) | 311, 1767, 2159 |
| TfiI | GAWTC | 5 cut(s) | 364, 581, 629, 1003, 1529 |
| Tru1I | TTAA | 2 cut(s) | 927, 2163 |
| Tru9I | TTAA | 2 cut(s) | 927, 2163 |
| TscAI | CASTG | 6 cut(s) | 267, 580, 669, 969, 1221, 1447 |
| TseFI | GTSAC | 6 cut(s) | 50, 1054, 1438, 1471, 1895, 2445 |
| Tsp45I | GTSAC | 6 cut(s) | 50, 1054, 1438, 1471, 1895, 2445 |
| TspDTI | ATGAA | 5 cut(s) | 926, 950, 1019, 1669, 1971 |
| TspGWI | ACGGA | 2 cut(s) | 262, 630 |
| TspRI | CASTG | 6 cut(s) | 267, 580, 669, 969, 1221, 1447 |
| Tth111I | GACNNNGTC | 4 cut(s) | 48, 109, 166, 226 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 705, 1938 |
| VpaK11BI | GGWCC | 4 cut(s) | 1479, 2367, 2409, 2520 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1994 |
| XapI | RAATTY | 1 cut(s) | 2159 |
| XmiI | GTMKAC | 1 cut(s) | 891 |
| XspI | CTAG | 4 cut(s) | 677, 747, 777, 813 |
| ZraI | GACGTC | 1 cut(s) | 1909 |