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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1572 |
| Acc65I | GGTACC | 2 cut(s) | 2000, 2122 |
| AccB1I | GGYRCC | 5 cut(s) | 524, 1231, 1892, 2000, 2122 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 306, 542, 589 |
| AccBSI | CCGCTC | 7 cut(s) | 920, 982, 1294, 1321, 1534, 1612, 1663 |
| AccI | GTMKAC | 1 cut(s) | 822 |
| AccII | CGCG | 9 cut(s) | 334, 384, 810, 835, 850, 1354, 1575, 1623, 1784 |
| AclWI | GGATC | 3 cut(s) | 533, 867, 951 |
| AcoI | YGGCCR | 4 cut(s) | 604, 933, 1590, 1722 |
| AcsI | RAATTY | 1 cut(s) | 552 |
| AcuI | CTGAAG | 2 cut(s) | 1366, 1788 |
| AcvI | CACGTG | 2 cut(s) | 122, 2087 |
| AcyI | GRCGYC | 4 cut(s) | 1232, 1436, 1569, 1893 |
| AfaI | GTAC | 4 cut(s) | 90, 1777, 2002, 2124 |
| AfeI | AGCGCT | 1 cut(s) | 392 |
| AflIII | ACRYGT | 5 cut(s) | 119, 121, 195, 1621, 1875 |
| AgeI | ACCGGT | 1 cut(s) | 909 |
| AgsI | TTSAA | 3 cut(s) | 1799, 1807, 1882 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 770, 1395 |
| AjiI | CACGTC | 1 cut(s) | 196 |
| AjnI | CCWGG | 1 cut(s) | 541 |
| AleI | CACNNNNGTG | 1 cut(s) | 999 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1283, 1315 |
| AluBI | AGCT | 9 cut(s) | 345, 377, 746, 1249, 1386, 1465, 1582, 1766, 1994 |
| AluI | AGCT | 9 cut(s) | 345, 377, 746, 1249, 1386, 1465, 1582, 1766, 1994 |
| Alw21I | GWGCWC | 2 cut(s) | 347, 1467 |
| Alw26I | GTCTC | 3 cut(s) | 1490, 1630, 1964 |
| AlwI | GGATC | 3 cut(s) | 533, 867, 951 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 542, 1450 |
| Ama87I | CYCGRG | 2 cut(s) | 1860, 2008 |
| Aor51HI | AGCGCT | 1 cut(s) | 392 |
| ApaI | GGGCCC | 2 cut(s) | 1174, 1861 |
| ApeKI | GCWGC | 9 cut(s) | 209, 365, 368, 410, 477, 700, 1654, 1699, 2013 |
| ApoI | RAATTY | 1 cut(s) | 552 |
| AsiGI | ACCGGT | 1 cut(s) | 909 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 661 |
| Asp718I | GGTACC | 2 cut(s) | 2000, 2122 |
| AsuC2I | CCSGG | 6 cut(s) | 187, 632, 1087, 1861, 1862, 2113 |
| AsuHPI | GGTGA | 4 cut(s) | 368, 1081, 1741, 1757 |
| AsuNHI | GCTAGC | 2 cut(s) | 413, 1540 |
| AvaI | CYCGRG | 2 cut(s) | 1860, 2008 |
| AvaII | GGWCC | 5 cut(s) | 787, 924, 1004, 1077, 2046 |
| BaeGI | GKGCMC | 3 cut(s) | 529, 1174, 1861 |
| BalI | TGGCCA | 2 cut(s) | 606, 1592 |
| BanI | GGYRCC | 5 cut(s) | 524, 1231, 1892, 2000, 2122 |
| BanII | GRGCYC | 4 cut(s) | 347, 1174, 1467, 1861 |
| BauI | CACGAG | 2 cut(s) | 324, 486 |
| BbrPI | CACGTG | 2 cut(s) | 122, 2087 |
| BbsI | GAAGAC | 2 cut(s) | 1214, 1835 |
| Bbv12I | GWGCWC | 2 cut(s) | 347, 1467 |
| BbvI | GCAGC | 9 cut(s) | 221, 352, 355, 397, 464, 687, 1641, 1711, 2025 |
| BccI | CCATC | 6 cut(s) | 142, 308, 1317, 1601, 1714, 2113 |
| BceAI | ACGGC | 5 cut(s) | 465, 948, 1137, 1223, 1377 |
| BciT130I | CCWGG | 1 cut(s) | 543 |
| BciVI | GTATCC | 1 cut(s) | 1970 |
| BcnI | CCSGG | 6 cut(s) | 187, 632, 1087, 1861, 1862, 2113 |
| BcoDI | GTCTC | 3 cut(s) | 1490, 1630, 1964 |
| BfaI | CTAG | 7 cut(s) | 278, 348, 378, 414, 779, 891, 1541 |
| BfmI | CTRYAG | 3 cut(s) | 293, 802, 1655 |
| BfoI | RGCGCY | 6 cut(s) | 394, 695, 741, 1103, 1235, 1896 |
| BfuI | GTATCC | 1 cut(s) | 1970 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1196 |
| BlpI | GCTNAGC | 1 cut(s) | 36 |
| Bme1390I | CCNGG | 7 cut(s) | 187, 543, 632, 1087, 1861, 1862, 2113 |
| Bme18I | GGWCC | 5 cut(s) | 787, 924, 1004, 1077, 2046 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 770, 1395 |
| BmeT110I | CYCGRG | 2 cut(s) | 1860, 2008 |
| BmgBI | CACGTC | 1 cut(s) | 196 |
| BmrFI | CCNGG | 7 cut(s) | 187, 543, 632, 1087, 1861, 1862, 2113 |
| BmsI | GCATC | 1 cut(s) | 975 |
| BmtI | GCTAGC | 2 cut(s) | 417, 1544 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1976 |
| BpiI | GAAGAC | 2 cut(s) | 1214, 1835 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1238, 1270 |
| BpmI | CTGGAG | 5 cut(s) | 519, 1124, 1472, 2016, 2120 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1466, 1674 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 36 |
| BpuEI | CTTGAG | 1 cut(s) | 740 |
| BpuMI | CCSGG | 6 cut(s) | 187, 632, 1087, 1861, 1862, 2113 |
| BsaAI | YACGTR | 2 cut(s) | 122, 2087 |
| BsaHI | GRCGYC | 4 cut(s) | 1232, 1436, 1569, 1893 |
| BsaI | GGTCTC | 1 cut(s) | 1490 |
| BsaJI | CCNNGG | 6 cut(s) | 503, 695, 1545, 1573, 1725, 1860 |
| BsaWI | WCCGGW | 1 cut(s) | 909 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 34, 64, 1140, 1170, 1283, 1313 |
| Bse118I | RCCGGY | 4 cut(s) | 727, 909, 935, 1024 |
| Bse1I | ACTGG | 3 cut(s) | 87, 1061, 1524 |
| Bse3DI | GCAATG | 1 cut(s) | 957 |
| BseBI | CCWGG | 1 cut(s) | 543 |
| BseDI | CCNNGG | 6 cut(s) | 503, 695, 1545, 1573, 1725, 1860 |
| BseGI | GGATG | 6 cut(s) | 153, 300, 990, 1725, 2032, 2124 |
| BseMI | GCAATG | 1 cut(s) | 957 |
| BseMII | CTCAG | 5 cut(s) | 50, 1480, 1751, 1830, 1944 |
| BseNI | ACTGG | 3 cut(s) | 87, 1061, 1524 |
| BseRI | GAGGAG | 2 cut(s) | 1067, 1856 |
| BseSI | GKGCMC | 3 cut(s) | 529, 1174, 1861 |
| BseX3I | CGGCCG | 1 cut(s) | 933 |
| BseXI | GCAGC | 9 cut(s) | 221, 352, 355, 397, 464, 687, 1641, 1711, 2025 |
| BseYI | CCCAGC | 5 cut(s) | 965, 1324, 1738, 1853, 1990 |
| BsgI | GTGCAG | 1 cut(s) | 1718 |
| Bsh1236I | CGCG | 9 cut(s) | 334, 384, 810, 835, 850, 1354, 1575, 1623, 1784 |
| Bsh1285I | CGRYCG | 1 cut(s) | 936 |
| BshNI | GGYRCC | 5 cut(s) | 524, 1231, 1892, 2000, 2122 |
| BshTI | ACCGGT | 1 cut(s) | 909 |
| BsiEI | CGRYCG | 1 cut(s) | 936 |
| BsiHKAI | GWGCWC | 2 cut(s) | 347, 1467 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1860, 2008 |
| BslFI | GGGAC | 6 cut(s) | 88, 777, 800, 826, 937, 1616 |
| BsmAI | GTCTC | 3 cut(s) | 1490, 1630, 1964 |
| BsmBI | CGTCTC | 1 cut(s) | 1630 |
| BsmFI | GGGAC | 6 cut(s) | 88, 777, 800, 826, 937, 1616 |
| Bso31I | GGTCTC | 1 cut(s) | 1490 |
| BsoBI | CYCGRG | 2 cut(s) | 1860, 2008 |
| Bsp120I | GGGCCC | 2 cut(s) | 1170, 1857 |
| Bsp1286I | GDGCHC | 5 cut(s) | 347, 529, 1174, 1467, 1861 |
| Bsp143I | GATC | 5 cut(s) | 538, 748, 859, 943, 1644 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 36 |
| BspCNI | CTCAG | 5 cut(s) | 49, 1479, 1752, 1831, 1945 |
| BspFNI | CGCG | 9 cut(s) | 334, 384, 810, 835, 850, 1354, 1575, 1623, 1784 |
| BspMAI | CTGCAG | 1 cut(s) | 1659 |
| BspOI | GCTAGC | 2 cut(s) | 417, 1544 |
| BspPI | GGATC | 3 cut(s) | 533, 867, 951 |
| BspT107I | GGYRCC | 5 cut(s) | 524, 1231, 1892, 2000, 2122 |
| BspTNI | GGTCTC | 1 cut(s) | 1490 |
| BsrBI | CCGCTC | 7 cut(s) | 920, 982, 1294, 1321, 1534, 1612, 1663 |
| BsrDI | GCAATG | 1 cut(s) | 957 |
| BsrFI | RCCGGY | 4 cut(s) | 727, 909, 935, 1024 |
| BsrI | ACTGG | 3 cut(s) | 87, 1061, 1524 |
| BssAI | RCCGGY | 4 cut(s) | 727, 909, 935, 1024 |
| BssECI | CCNNGG | 6 cut(s) | 503, 695, 1545, 1573, 1725, 1860 |
| BssMI | GATC | 5 cut(s) | 538, 748, 859, 943, 1644 |
| BssNAI | GTATAC | 1 cut(s) | 823 |
| BssNI | GRCGYC | 4 cut(s) | 1232, 1436, 1569, 1893 |
| BssSI | CACGAG | 2 cut(s) | 324, 486 |
| BssT1I | CCWWGG | 2 cut(s) | 503, 1545 |
| Bst1107I | GTATAC | 1 cut(s) | 823 |
| Bst2BI | CACGAG | 2 cut(s) | 324, 486 |
| Bst2UI | CCWGG | 1 cut(s) | 543 |
| Bst4CI | ACNGT | 3 cut(s) | 111, 650, 1275 |
| Bst6I | CTCTTC | 5 cut(s) | 426, 835, 1137, 1310, 1727 |
| BstACI | GRCGYC | 4 cut(s) | 1232, 1436, 1569, 1893 |
| BstBAI | YACGTR | 2 cut(s) | 122, 2087 |
| BstDEI | CTNAG | 7 cut(s) | 36, 759, 1466, 1674, 1760, 1839, 1953 |
| BstDSI | CCRYGG | 1 cut(s) | 1573 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1454, 2040 |
| BstF5I | GGATG | 6 cut(s) | 153, 300, 990, 1725, 2032, 2124 |
| BstFNI | CGCG | 9 cut(s) | 334, 384, 810, 835, 850, 1354, 1575, 1623, 1784 |
| BstH2I | RGCGCY | 6 cut(s) | 394, 695, 741, 1103, 1235, 1896 |
| BstKTI | GATC | 5 cut(s) | 541, 751, 862, 946, 1647 |
| BstMAI | GTCTC | 3 cut(s) | 1490, 1630, 1964 |
| BstMBI | GATC | 5 cut(s) | 538, 748, 859, 943, 1644 |
| BstMCI | CGRYCG | 1 cut(s) | 936 |
| BstNI | CCWGG | 1 cut(s) | 543 |
| BstNSI | RCATGY | 1 cut(s) | 1879 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1976 |
| BstSCI | CCNGG | 7 cut(s) | 185, 541, 630, 1085, 1859, 1860, 2111 |
| BstSFI | CTRYAG | 3 cut(s) | 293, 802, 1655 |
| BstSLI | GKGCMC | 3 cut(s) | 529, 1174, 1861 |
| BstUI | CGCG | 9 cut(s) | 334, 384, 810, 835, 850, 1354, 1575, 1623, 1784 |
| BstV1I | GCAGC | 9 cut(s) | 221, 352, 355, 397, 464, 687, 1641, 1711, 2025 |
| BstV2I | GAAGAC | 2 cut(s) | 1214, 1835 |
| BstX2I | RGATCY | 1 cut(s) | 538 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1001 |
| BstYI | RGATCY | 1 cut(s) | 538 |
| BstZ17I | GTATAC | 1 cut(s) | 823 |
| BstZI | CGGCCG | 1 cut(s) | 933 |
| BsuI | GTATCC | 1 cut(s) | 1970 |
| BtgI | CCRYGG | 1 cut(s) | 1573 |
| BtrI | CACGTC | 1 cut(s) | 196 |
| BtsCI | GGATG | 6 cut(s) | 153, 300, 990, 1725, 2032, 2124 |
| BtsI | GCAGTG | 2 cut(s) | 181, 263 |
| BtsIMutI | CAGTG | 6 cut(s) | 80, 181, 263, 1068, 1249, 1832 |
| CaiI | CAGNNNCTG | 2 cut(s) | 542, 1450 |
| Cfr10I | RCCGGY | 4 cut(s) | 727, 909, 935, 1024 |
| Cfr42I | CCGCGG | 1 cut(s) | 1576 |
| Cfr9I | CCCGGG | 1 cut(s) | 1860 |
| Csp6I | GTAC | 4 cut(s) | 89, 1776, 2001, 2123 |
| CspAI | ACCGGT | 1 cut(s) | 909 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1777, 1812 |
| CviAII | CATG | 5 cut(s) | 251, 608, 1418, 1651, 1876 |
| CviQI | GTAC | 4 cut(s) | 89, 1776, 2001, 2123 |
| DdeI | CTNAG | 7 cut(s) | 36, 759, 1466, 1674, 1760, 1839, 1953 |
| DinI | GGCGCC | 2 cut(s) | 1233, 1894 |
| DpnI | GATC | 5 cut(s) | 540, 750, 861, 945, 1646 |
| DpnII | GATC | 5 cut(s) | 538, 748, 859, 943, 1644 |
| DriI | GACNNNNNGTC | 2 cut(s) | 770, 1395 |
| EaeI | YGGCCR | 4 cut(s) | 604, 933, 1590, 1722 |
| EagI | CGGCCG | 1 cut(s) | 933 |
| Eam1104I | CTCTTC | 5 cut(s) | 426, 835, 1137, 1310, 1727 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 770, 1395 |
| EarI | CTCTTC | 5 cut(s) | 426, 835, 1137, 1310, 1727 |
| EciI | GGCGGA | 8 cut(s) | 489, 669, 890, 1043, 1517, 1538, 1565, 1699 |
| Ecl136II | GAGCTC | 2 cut(s) | 345, 1465 |
| EclXI | CGGCCG | 1 cut(s) | 933 |
| Eco130I | CCWWGG | 2 cut(s) | 503, 1545 |
| Eco24I | GRGCYC | 4 cut(s) | 347, 1174, 1467, 1861 |
| Eco31I | GGTCTC | 1 cut(s) | 1490 |
| Eco47I | GGWCC | 5 cut(s) | 787, 924, 1004, 1077, 2046 |
| Eco47III | AGCGCT | 1 cut(s) | 392 |
| Eco52I | CGGCCG | 1 cut(s) | 933 |
| Eco53kI | GAGCTC | 2 cut(s) | 345, 1465 |
| Eco57I | CTGAAG | 2 cut(s) | 1366, 1788 |
| Eco72I | CACGTG | 2 cut(s) | 122, 2087 |
| Eco88I | CYCGRG | 2 cut(s) | 1860, 2008 |
| EcoICRI | GAGCTC | 2 cut(s) | 345, 1465 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1454, 2040 |
| EcoO109I | RGGNCCY | 5 cut(s) | 642, 787, 924, 1170, 1857 |
| EcoRII | CCWGG | 1 cut(s) | 541 |
| EcoT14I | CCWWGG | 2 cut(s) | 503, 1545 |
| EcoT38I | GRGCYC | 4 cut(s) | 347, 1174, 1467, 1861 |
| EgeI | GGCGCC | 2 cut(s) | 1233, 1894 |
| EheI | GGCGCC | 2 cut(s) | 1233, 1894 |
| ErhI | CCWWGG | 2 cut(s) | 503, 1545 |
| Esp3I | CGTCTC | 1 cut(s) | 1630 |
| FaeI | CATG | 5 cut(s) | 254, 611, 1421, 1654, 1879 |
| FaqI | GGGAC | 6 cut(s) | 88, 777, 800, 826, 937, 1616 |
| FatI | CATG | 5 cut(s) | 250, 607, 1417, 1650, 1875 |
| FblI | GTMKAC | 1 cut(s) | 822 |
| FokI | GGATG | 5 cut(s) | 160, 287, 997, 1732, 2019 |
| FriOI | GRGCYC | 4 cut(s) | 347, 1174, 1467, 1861 |
| FspBI | CTAG | 7 cut(s) | 278, 348, 378, 414, 779, 891, 1541 |
| GsaI | CCCAGC | 5 cut(s) | 969, 1328, 1742, 1857, 1994 |
| GsuI | CTGGAG | 5 cut(s) | 519, 1124, 1472, 2016, 2120 |
| HaeII | RGCGCY | 6 cut(s) | 394, 695, 741, 1103, 1235, 1896 |
| Hin1I | GRCGYC | 4 cut(s) | 1232, 1436, 1569, 1893 |
| Hin1II | CATG | 5 cut(s) | 254, 611, 1421, 1654, 1879 |
| HincII | GTYRAC | 1 cut(s) | 117 |
| HindII | GTYRAC | 1 cut(s) | 117 |
| HpaI | GTTAAC | 1 cut(s) | 117 |
| HphI | GGTGA | 4 cut(s) | 368, 1081, 1741, 1757 |
| Hpy166II | GTNNAC | 5 cut(s) | 117, 485, 716, 823, 1788 |
| Hpy188I | TCNGA | 9 cut(s) | 193, 574, 864, 900, 948, 1182, 1481, 2050, 2077 |
| Hpy188III | TCNNGA | 7 cut(s) | 338, 486, 536, 752, 1133, 1489, 2099 |
| Hpy8I | GTNNAC | 5 cut(s) | 117, 485, 716, 823, 1788 |
| Hpy99I | CGWCG | 8 cut(s) | 54, 389, 801, 1179, 1363, 1393, 1441, 2077 |
| HpyAV | CCTTC | 8 cut(s) | 800, 970, 1180, 1280, 1390, 1843, 1882, 2036 |
| HpyCH4III | ACNGT | 3 cut(s) | 111, 650, 1275 |
| HpyCH4IV | ACGT | 6 cut(s) | 121, 156, 195, 1391, 1569, 2086 |
| HpyCH4V | TGCA | 6 cut(s) | 254, 703, 1021, 1271, 1657, 1699 |
| HpyF3I | CTNAG | 7 cut(s) | 36, 759, 1466, 1674, 1760, 1839, 1953 |
| HpySE526I | ACGT | 6 cut(s) | 121, 156, 195, 1391, 1569, 2086 |
| Hsp92I | GRCGYC | 4 cut(s) | 1232, 1436, 1569, 1893 |
| Hsp92II | CATG | 5 cut(s) | 254, 611, 1421, 1654, 1879 |
| KasI | GGCGCC | 2 cut(s) | 1231, 1892 |
| KflI | GGGWCCC | 1 cut(s) | 924 |
| KpnI | GGTACC | 2 cut(s) | 2004, 2126 |
| KroI | GCCGGC | 2 cut(s) | 727, 935 |
| KroNI | GCCGGC | 2 cut(s) | 729, 937 |
| KspAI | GTTAAC | 1 cut(s) | 117 |
| KspI | CCGCGG | 1 cut(s) | 1576 |
| Kzo9I | GATC | 5 cut(s) | 538, 748, 859, 943, 1644 |
| Lsp1109I | GCAGC | 9 cut(s) | 221, 352, 355, 397, 464, 687, 1641, 1711, 2025 |
| LweI | GCATC | 1 cut(s) | 975 |
| MaeI | CTAG | 7 cut(s) | 278, 348, 378, 414, 779, 891, 1541 |
| MaeII | ACGT | 6 cut(s) | 121, 156, 195, 1391, 1569, 2086 |
| MaeIII | GTNAC | 6 cut(s) | 313, 1042, 1069, 1556, 1914, 2082 |
| MalI | GATC | 5 cut(s) | 540, 750, 861, 945, 1646 |
| MbiI | CCGCTC | 7 cut(s) | 920, 982, 1294, 1321, 1534, 1612, 1663 |
| MboI | GATC | 5 cut(s) | 538, 748, 859, 943, 1644 |
| MfeI | CAATTG | 1 cut(s) | 1365 |
| MflI | RGATCY | 1 cut(s) | 538 |
| MhlI | GDGCHC | 5 cut(s) | 347, 529, 1174, 1467, 1861 |
| MlsI | TGGCCA | 2 cut(s) | 606, 1592 |
| MluCI | AATT | 2 cut(s) | 552, 1365 |
| MluI | ACGCGT | 1 cut(s) | 1621 |
| MluNI | TGGCCA | 2 cut(s) | 606, 1592 |
| Mly113I | GGCGCC | 2 cut(s) | 1232, 1893 |
| MlyI | GAGTC | 5 cut(s) | 731, 759, 1247, 1715, 2050 |
| MmeI | TCCRAC | 3 cut(s) | 923, 1614, 2055 |
| Mox20I | TGGCCA | 2 cut(s) | 606, 1592 |
| MroNI | GCCGGC | 2 cut(s) | 727, 935 |
| MroXI | GAANNNNTTC | 1 cut(s) | 661 |
| MscI | TGGCCA | 2 cut(s) | 606, 1592 |
| MseI | TTAA | 2 cut(s) | 116, 1824 |
| MslI | CAYNNNNRTG | 2 cut(s) | 999, 1694 |
| Msp20I | TGGCCA | 2 cut(s) | 606, 1592 |
| MspR9I | CCNGG | 7 cut(s) | 187, 543, 632, 1087, 1861, 1862, 2113 |
| MunI | CAATTG | 1 cut(s) | 1365 |
| MvaI | CCWGG | 1 cut(s) | 543 |
| MvnI | CGCG | 9 cut(s) | 334, 384, 810, 835, 850, 1354, 1575, 1623, 1784 |
| NaeI | GCCGGC | 2 cut(s) | 729, 937 |
| NarI | GGCGCC | 2 cut(s) | 1232, 1893 |
| NciI | CCSGG | 6 cut(s) | 187, 632, 1087, 1861, 1862, 2113 |
| NdeII | GATC | 5 cut(s) | 538, 748, 859, 943, 1644 |
| NgoMIV | GCCGGC | 2 cut(s) | 727, 935 |
| NheI | GCTAGC | 2 cut(s) | 413, 1540 |
| NlaIII | CATG | 5 cut(s) | 254, 611, 1421, 1654, 1879 |
| NmeAIII | GCCGAG | 3 cut(s) | 720, 1288, 1750 |
| NmuCI | GTSAC | 5 cut(s) | 1042, 1069, 1556, 1914, 2082 |
| NspI | RCATGY | 1 cut(s) | 1879 |
| OliI | CACNNNNGTG | 1 cut(s) | 999 |
| PciI | ACATGT | 1 cut(s) | 1875 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 239, 331 |
| PdiI | GCCGGC | 2 cut(s) | 729, 937 |
| PdmI | GAANNNNTTC | 1 cut(s) | 661 |
| PfeI | GAWTC | 6 cut(s) | 182, 230, 458, 755, 1127, 1441 |
| PflFI | GACNNNGTC | 1 cut(s) | 1034 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 306, 542, 589 |
| PinAI | ACCGGT | 1 cut(s) | 909 |
| PleI | GAGTC | 5 cut(s) | 730, 759, 1247, 1714, 2050 |
| PluTI | GGCGCC | 2 cut(s) | 1235, 1896 |
| PmaCI | CACGTG | 2 cut(s) | 122, 2087 |
| PmlI | CACGTG | 2 cut(s) | 122, 2087 |
| PpsI | GAGTC | 5 cut(s) | 730, 759, 1247, 1714, 2050 |
| Ppu21I | YACGTR | 2 cut(s) | 122, 2087 |
| PpuMI | RGGWCCY | 2 cut(s) | 787, 924 |
| PscI | ACATGT | 1 cut(s) | 1875 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1976 |
| Psp124BI | GAGCTC | 2 cut(s) | 347, 1467 |
| Psp5II | RGGWCCY | 2 cut(s) | 787, 924 |
| Psp6I | CCWGG | 1 cut(s) | 541 |
| PspCI | CACGTG | 2 cut(s) | 122, 2087 |
| PspFI | CCCAGC | 5 cut(s) | 965, 1324, 1738, 1853, 1990 |
| PspGI | CCWGG | 1 cut(s) | 541 |
| PspOMI | GGGCCC | 2 cut(s) | 1170, 1857 |
| PspPPI | RGGWCCY | 2 cut(s) | 787, 924 |
| PstI | CTGCAG | 1 cut(s) | 1659 |
| PstNI | CAGNNNCTG | 2 cut(s) | 542, 1450 |
| PsuI | RGATCY | 1 cut(s) | 538 |
| PsyI | GACNNNGTC | 1 cut(s) | 1034 |
| PvuII | CAGCTG | 1 cut(s) | 1994 |
| RsaI | GTAC | 4 cut(s) | 90, 1777, 2002, 2124 |
| RsaNI | GTAC | 4 cut(s) | 89, 1776, 2001, 2123 |
| RseI | CAYNNNNRTG | 2 cut(s) | 999, 1694 |
| SacI | GAGCTC | 2 cut(s) | 347, 1467 |
| SacII | CCGCGG | 1 cut(s) | 1576 |
| SaqAI | TTAA | 2 cut(s) | 116, 1824 |
| Sau3AI | GATC | 5 cut(s) | 538, 748, 859, 943, 1644 |
| SchI | GAGTC | 5 cut(s) | 731, 759, 1247, 1715, 2050 |
| ScrFI | CCNGG | 7 cut(s) | 187, 543, 632, 1087, 1861, 1862, 2113 |
| SduI | GDGCHC | 5 cut(s) | 347, 529, 1174, 1467, 1861 |
| SfaNI | GCATC | 1 cut(s) | 975 |
| SfcI | CTRYAG | 3 cut(s) | 293, 802, 1655 |
| SfoI | GGCGCC | 2 cut(s) | 1233, 1894 |
| Sfr303I | CCGCGG | 1 cut(s) | 1576 |
| SgrBI | CCGCGG | 1 cut(s) | 1576 |
| SinI | GGWCC | 5 cut(s) | 787, 924, 1004, 1077, 2046 |
| SmaI | CCCGGG | 1 cut(s) | 1862 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 999, 1694 |
| SmlI | CTYRAG | 1 cut(s) | 719 |
| SmoI | CTYRAG | 1 cut(s) | 719 |
| SrfI | GCCCGGGC | 1 cut(s) | 1862 |
| Sse9I | AATT | 2 cut(s) | 552, 1365 |
| SspDI | GGCGCC | 2 cut(s) | 1231, 1892 |
| SspMI | CTAG | 7 cut(s) | 278, 348, 378, 414, 779, 891, 1541 |
| SstI | GAGCTC | 2 cut(s) | 347, 1467 |
| StyD4I | CCNGG | 7 cut(s) | 185, 541, 630, 1085, 1859, 1860, 2111 |
| StyI | CCWWGG | 2 cut(s) | 503, 1545 |
| TaaI | ACNGT | 3 cut(s) | 111, 650, 1275 |
| TaiI | ACGT | 6 cut(s) | 124, 159, 198, 1394, 1572, 2089 |
| TaqI | TCGA | 6 cut(s) | 126, 170, 751, 1388, 1439, 1530 |
| TasI | AATT | 2 cut(s) | 552, 1365 |
| TfiI | GAWTC | 6 cut(s) | 182, 230, 458, 755, 1127, 1441 |
| Tru1I | TTAA | 2 cut(s) | 116, 1824 |
| Tru9I | TTAA | 2 cut(s) | 116, 1824 |
| TscAI | CASTG | 6 cut(s) | 87, 181, 270, 1068, 1249, 1839 |
| TseFI | GTSAC | 5 cut(s) | 1042, 1069, 1556, 1914, 2082 |
| TseI | GCWGC | 9 cut(s) | 209, 365, 368, 410, 477, 700, 1654, 1699, 2013 |
| Tsp45I | GTSAC | 5 cut(s) | 1042, 1069, 1556, 1914, 2082 |
| TspDTI | ATGAA | 2 cut(s) | 624, 1632 |
| TspGWI | ACGGA | 3 cut(s) | 38, 231, 2054 |
| TspMI | CCCGGG | 1 cut(s) | 1860 |
| TspRI | CASTG | 6 cut(s) | 87, 181, 270, 1068, 1249, 1839 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1034 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 306, 542, 589 |
| VpaK11BI | GGWCC | 5 cut(s) | 787, 924, 1004, 1077, 2046 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1454, 2040 |
| XapI | RAATTY | 1 cut(s) | 552 |
| XceI | RCATGY | 1 cut(s) | 1879 |
| XmaI | CCCGGG | 1 cut(s) | 1860 |
| XmiI | GTMKAC | 1 cut(s) | 822 |
| XmnI | GAANNNNTTC | 1 cut(s) | 661 |
| XspI | CTAG | 7 cut(s) | 278, 348, 378, 414, 779, 891, 1541 |
| ZraI | GACGTC | 1 cut(s) | 1570 |