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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1325 |
| AccB1I | GGYRCC | 3 cut(s) | 1073, 1202, 1325 |
| AccBSI | CCGCTC | 5 cut(s) | 634, 676, 817, 829, 1352 |
| AccI | GTMKAC | 2 cut(s) | 237, 447 |
| AccII | CGCG | 2 cut(s) | 461, 1356 |
| AclWI | GGATC | 4 cut(s) | 434, 885, 904, 1130 |
| AcoI | YGGCCR | 2 cut(s) | 759, 1002 |
| AcsI | RAATTY | 2 cut(s) | 98, 587 |
| AcuI | CTGAAG | 1 cut(s) | 899 |
| AcyI | GRCGYC | 1 cut(s) | 754 |
| AfaI | GTAC | 5 cut(s) | 50, 172, 203, 414, 1327 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 14, 15, 268, 709, 873, 919, 1356 |
| AgsI | TTSAA | 1 cut(s) | 1099 |
| AjnI | CCWGG | 9 cut(s) | 8, 124, 189, 651, 705, 756, 822, 932, 975 |
| AluBI | AGCT | 8 cut(s) | 382, 682, 715, 850, 919, 926, 955, 983 |
| AluI | AGCT | 8 cut(s) | 382, 682, 715, 850, 919, 926, 955, 983 |
| Alw21I | GWGCWC | 2 cut(s) | 384, 684 |
| Alw26I | GTCTC | 3 cut(s) | 467, 847, 1288 |
| AlwI | GGATC | 4 cut(s) | 434, 885, 904, 1130 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 250, 602 |
| Ama87I | CYCGRG | 2 cut(s) | 405, 638 |
| ApeKI | GCWGC | 4 cut(s) | 365, 779, 871, 926 |
| ApoI | RAATTY | 2 cut(s) | 98, 587 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 342, 374, 789, 821 |
| Asp718I | GGTACC | 1 cut(s) | 1325 |
| AspLEI | GCGC | 1 cut(s) | 256 |
| AsuC2I | CCSGG | 1 cut(s) | 668 |
| AsuHPI | GGTGA | 3 cut(s) | 315, 958, 1075 |
| AvaI | CYCGRG | 2 cut(s) | 405, 638 |
| AvaII | GGWCC | 5 cut(s) | 18, 166, 484, 820, 936 |
| BaeGI | GKGCMC | 1 cut(s) | 1207 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1317, 1350 |
| BalI | TGGCCA | 1 cut(s) | 761 |
| BanI | GGYRCC | 3 cut(s) | 1073, 1202, 1325 |
| BanII | GRGCYC | 3 cut(s) | 384, 684, 1346 |
| BauI | CACGAG | 1 cut(s) | 143 |
| Bbv12I | GWGCWC | 2 cut(s) | 384, 684 |
| BbvCI | CCTCAGC | 2 cut(s) | 942, 984 |
| BbvI | GCAGC | 4 cut(s) | 352, 791, 858, 913 |
| BccI | CCATC | 3 cut(s) | 32, 495, 1156 |
| BceAI | ACGGC | 2 cut(s) | 334, 1359 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 554, 588 |
| BciT130I | CCWGG | 9 cut(s) | 10, 126, 191, 653, 707, 758, 824, 934, 977 |
| BcnI | CCSGG | 1 cut(s) | 668 |
| BcoDI | GTCTC | 3 cut(s) | 467, 847, 1288 |
| BfaI | CTAG | 4 cut(s) | 113, 215, 542, 851 |
| BfoI | RGCGCY | 1 cut(s) | 257 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 318, 1144 |
| BlpI | GCTNAGC | 1 cut(s) | 257 |
| Bme18I | GGWCC | 5 cut(s) | 18, 166, 484, 820, 936 |
| BmeT110I | CYCGRG | 2 cut(s) | 405, 638 |
| BmsI | GCATC | 4 cut(s) | 304, 511, 766, 1139 |
| BoxI | GACNNNNGTC | 1 cut(s) | 233 |
| BpmI | CTGGAG | 5 cut(s) | 212, 674, 689, 845, 977 |
| Bpu10I | CCTNAGC | 4 cut(s) | 683, 891, 942, 984 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 257 |
| BpuMI | CCSGG | 1 cut(s) | 668 |
| BsaHI | GRCGYC | 1 cut(s) | 754 |
| BsaI | GGTCTC | 2 cut(s) | 467, 1288 |
| BsaWI | WCCGGW | 1 cut(s) | 274 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 185, 215, 827, 857 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 14, 15, 268, 709, 873, 919, 1356 |
| Bse118I | RCCGGY | 1 cut(s) | 1070 |
| Bse1I | ACTGG | 4 cut(s) | 255, 349, 443, 741 |
| Bse3DI | GCAATG | 1 cut(s) | 361 |
| BseBI | CCWGG | 9 cut(s) | 10, 126, 191, 653, 707, 758, 824, 934, 977 |
| BseGI | GGATG | 7 cut(s) | 460, 469, 526, 748, 790, 1130, 1183 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 14, 15, 268, 709, 873, 919, 1356 |
| BseMI | GCAATG | 1 cut(s) | 361 |
| BseMII | CTCAG | 9 cut(s) | 248, 257, 258, 594, 697, 933, 975, 1242, 1286 |
| BseNI | ACTGG | 4 cut(s) | 255, 349, 443, 741 |
| BseRI | GAGGAG | 2 cut(s) | 161, 704 |
| BseSI | GKGCMC | 1 cut(s) | 1207 |
| BseX3I | CGGCCG | 1 cut(s) | 1002 |
| BseXI | GCAGC | 4 cut(s) | 352, 791, 858, 913 |
| BseYI | CCCAGC | 4 cut(s) | 536, 715, 1134, 1142 |
| BsgI | GTGCAG | 2 cut(s) | 351, 353 |
| Bsh1236I | CGCG | 2 cut(s) | 461, 1356 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1005 |
| BshNI | GGYRCC | 3 cut(s) | 1073, 1202, 1325 |
| BsiEI | CGRYCG | 1 cut(s) | 1005 |
| BsiHKAI | GWGCWC | 2 cut(s) | 384, 684 |
| BsiHKCI | CYCGRG | 2 cut(s) | 405, 638 |
| BsiSI | CCGG | 3 cut(s) | 275, 668, 1071 |
| BslFI | GGGAC | 3 cut(s) | 31, 344, 833 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 14, 15, 268, 709, 873, 919, 1356 |
| BsmAI | GTCTC | 3 cut(s) | 467, 847, 1288 |
| BsmFI | GGGAC | 3 cut(s) | 31, 344, 833 |
| Bso31I | GGTCTC | 2 cut(s) | 467, 1288 |
| BsoBI | CYCGRG | 2 cut(s) | 405, 638 |
| Bsp1286I | GDGCHC | 4 cut(s) | 384, 684, 1207, 1346 |
| Bsp143I | GATC | 8 cut(s) | 177, 439, 693, 787, 877, 909, 1122, 1363 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 257 |
| Bsp19I | CCATGG | 1 cut(s) | 162 |
| BspCNI | CTCAG | 9 cut(s) | 249, 256, 259, 595, 696, 934, 976, 1243, 1285 |
| BspFNI | CGCG | 2 cut(s) | 461, 1356 |
| BspPI | GGATC | 4 cut(s) | 434, 885, 904, 1130 |
| BspT107I | GGYRCC | 3 cut(s) | 1073, 1202, 1325 |
| BspTNI | GGTCTC | 2 cut(s) | 467, 1288 |
| BsrBI | CCGCTC | 5 cut(s) | 634, 676, 817, 829, 1352 |
| BsrDI | GCAATG | 1 cut(s) | 361 |
| BsrFI | RCCGGY | 1 cut(s) | 1070 |
| BsrI | ACTGG | 4 cut(s) | 255, 349, 443, 741 |
| BssAI | RCCGGY | 1 cut(s) | 1070 |
| BssMI | GATC | 8 cut(s) | 177, 439, 693, 787, 877, 909, 1122, 1363 |
| BssNI | GRCGYC | 1 cut(s) | 754 |
| BssSI | CACGAG | 1 cut(s) | 143 |
| BssT1I | CCWWGG | 3 cut(s) | 162, 418, 726 |
| Bst2BI | CACGAG | 1 cut(s) | 143 |
| Bst2UI | CCWGG | 9 cut(s) | 10, 126, 191, 653, 707, 758, 824, 934, 977 |
| Bst4CI | ACNGT | 6 cut(s) | 170, 235, 529, 1012, 1095, 1325 |
| BstACI | GRCGYC | 1 cut(s) | 754 |
| BstDSI | CCRYGG | 2 cut(s) | 162, 327 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 266 |
| BstF5I | GGATG | 7 cut(s) | 460, 469, 526, 748, 790, 1130, 1183 |
| BstFNI | CGCG | 2 cut(s) | 461, 1356 |
| BstH2I | RGCGCY | 1 cut(s) | 257 |
| BstHHI | GCGC | 1 cut(s) | 256 |
| BstKTI | GATC | 8 cut(s) | 180, 442, 696, 790, 880, 912, 1125, 1366 |
| BstMAI | GTCTC | 3 cut(s) | 467, 847, 1288 |
| BstMBI | GATC | 8 cut(s) | 177, 439, 693, 787, 877, 909, 1122, 1363 |
| BstMCI | CGRYCG | 1 cut(s) | 1005 |
| BstNI | CCWGG | 9 cut(s) | 10, 126, 191, 653, 707, 758, 824, 934, 977 |
| BstNSI | RCATGY | 2 cut(s) | 202, 998 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 233 |
| BstSLI | GKGCMC | 1 cut(s) | 1207 |
| BstUI | CGCG | 2 cut(s) | 461, 1356 |
| BstV1I | GCAGC | 4 cut(s) | 352, 791, 858, 913 |
| BstX2I | RGATCY | 1 cut(s) | 909 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1142 |
| BstYI | RGATCY | 1 cut(s) | 909 |
| BstZI | CGGCCG | 1 cut(s) | 1002 |
| BtgI | CCRYGG | 2 cut(s) | 162, 327 |
| BtsCI | GGATG | 7 cut(s) | 460, 469, 526, 748, 790, 1130, 1183 |
| BtsIMutI | CAGTG | 2 cut(s) | 534, 1008 |
| CaiI | CAGNNNCTG | 2 cut(s) | 250, 602 |
| CciNI | GCGGCCGC | 1 cut(s) | 1002 |
| CfoI | GCGC | 1 cut(s) | 256 |
| Cfr10I | RCCGGY | 1 cut(s) | 1070 |
| CseI | GACGC | 3 cut(s) | 467, 762, 1223 |
| Csp6I | GTAC | 5 cut(s) | 49, 171, 202, 413, 1326 |
| CviAII | CATG | 4 cut(s) | 163, 199, 995, 1051 |
| CviQI | GTAC | 5 cut(s) | 49, 171, 202, 413, 1326 |
| DpnI | GATC | 8 cut(s) | 179, 441, 695, 789, 879, 911, 1124, 1365 |
| DpnII | GATC | 8 cut(s) | 177, 439, 693, 787, 877, 909, 1122, 1363 |
| EaeI | YGGCCR | 2 cut(s) | 759, 1002 |
| EagI | CGGCCG | 1 cut(s) | 1002 |
| EciI | GGCGGA | 3 cut(s) | 111, 755, 1256 |
| Ecl136II | GAGCTC | 2 cut(s) | 382, 682 |
| EclXI | CGGCCG | 1 cut(s) | 1002 |
| Eco130I | CCWWGG | 3 cut(s) | 162, 418, 726 |
| Eco24I | GRGCYC | 3 cut(s) | 384, 684, 1346 |
| Eco31I | GGTCTC | 2 cut(s) | 467, 1288 |
| Eco47I | GGWCC | 5 cut(s) | 18, 166, 484, 820, 936 |
| Eco52I | CGGCCG | 1 cut(s) | 1002 |
| Eco53kI | GAGCTC | 2 cut(s) | 382, 682 |
| Eco57I | CTGAAG | 1 cut(s) | 899 |
| Eco88I | CYCGRG | 2 cut(s) | 405, 638 |
| EcoICRI | GAGCTC | 2 cut(s) | 382, 682 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 266 |
| EcoO109I | RGGNCCY | 4 cut(s) | 18, 511, 700, 820 |
| EcoRI | GAATTC | 1 cut(s) | 98 |
| EcoRII | CCWGG | 9 cut(s) | 8, 124, 189, 651, 705, 756, 822, 932, 975 |
| EcoT14I | CCWWGG | 3 cut(s) | 162, 418, 726 |
| EcoT38I | GRGCYC | 3 cut(s) | 384, 684, 1346 |
| ErhI | CCWWGG | 3 cut(s) | 162, 418, 726 |
| FaeI | CATG | 4 cut(s) | 166, 202, 998, 1054 |
| FaqI | GGGAC | 3 cut(s) | 31, 344, 833 |
| FatI | CATG | 4 cut(s) | 162, 198, 994, 1050 |
| FauI | CCCGC | 9 cut(s) | 6, 49, 669, 810, 867, 1147, 1214, 1269, 1349 |
| FauNDI | CATATG | 1 cut(s) | 580 |
| FblI | GTMKAC | 2 cut(s) | 237, 447 |
| FokI | GGATG | 7 cut(s) | 467, 476, 533, 755, 797, 1117, 1190 |
| FriOI | GRGCYC | 3 cut(s) | 384, 684, 1346 |
| FspBI | CTAG | 4 cut(s) | 113, 215, 542, 851 |
| GlaI | GCGC | 1 cut(s) | 255 |
| GsaI | CCCAGC | 4 cut(s) | 540, 719, 1138, 1146 |
| GsuI | CTGGAG | 5 cut(s) | 212, 674, 689, 845, 977 |
| HaeII | RGCGCY | 1 cut(s) | 257 |
| HapII | CCGG | 3 cut(s) | 275, 668, 1071 |
| HgaI | GACGC | 3 cut(s) | 467, 762, 1223 |
| HhaI | GCGC | 1 cut(s) | 256 |
| Hin1I | GRCGYC | 1 cut(s) | 754 |
| Hin1II | CATG | 4 cut(s) | 166, 202, 998, 1054 |
| Hin6I | GCGC | 1 cut(s) | 254 |
| HinP1I | GCGC | 1 cut(s) | 254 |
| HincII | GTYRAC | 2 cut(s) | 238, 448 |
| HindII | GTYRAC | 2 cut(s) | 238, 448 |
| HinfI | GANTC | 6 cut(s) | 116, 403, 566, 661, 1099, 1247 |
| HpaII | CCGG | 3 cut(s) | 275, 668, 1071 |
| HphI | GGTGA | 3 cut(s) | 315, 958, 1075 |
| Hpy166II | GTNNAC | 3 cut(s) | 238, 415, 448 |
| Hpy188I | TCNGA | 8 cut(s) | 97, 246, 268, 520, 1104, 1252, 1279, 1368 |
| Hpy188III | TCNNGA | 1 cut(s) | 85 |
| Hpy8I | GTNNAC | 3 cut(s) | 238, 415, 448 |
| Hpy99I | CGWCG | 6 cut(s) | 239, 320, 452, 556, 756, 812 |
| HpyAV | CCTTC | 6 cut(s) | 31, 344, 493, 923, 1039, 1060 |
| HpyCH4III | ACNGT | 6 cut(s) | 170, 235, 529, 1012, 1095, 1325 |
| HpyCH4V | TGCA | 4 cut(s) | 334, 368, 779, 1163 |
| Hsp92I | GRCGYC | 1 cut(s) | 754 |
| Hsp92II | CATG | 4 cut(s) | 166, 202, 998, 1054 |
| HspAI | GCGC | 1 cut(s) | 254 |
| KpnI | GGTACC | 1 cut(s) | 1329 |
| Kzo9I | GATC | 8 cut(s) | 177, 439, 693, 787, 877, 909, 1122, 1363 |
| LmnI | GCTCC | 7 cut(s) | 73, 387, 679, 712, 748, 826, 980 |
| Lsp1109I | GCAGC | 4 cut(s) | 352, 791, 858, 913 |
| LweI | GCATC | 4 cut(s) | 304, 511, 766, 1139 |
| MaeI | CTAG | 4 cut(s) | 113, 215, 542, 851 |
| MaeIII | GTNAC | 5 cut(s) | 3, 128, 400, 529, 1333 |
| MalI | GATC | 8 cut(s) | 179, 441, 695, 789, 879, 911, 1124, 1365 |
| MbiI | CCGCTC | 5 cut(s) | 634, 676, 817, 829, 1352 |
| MboI | GATC | 8 cut(s) | 177, 439, 693, 787, 877, 909, 1122, 1363 |
| MboII | GAAGA | 3 cut(s) | 508, 610, 961 |
| MflI | RGATCY | 1 cut(s) | 909 |
| MhlI | GDGCHC | 4 cut(s) | 384, 684, 1207, 1346 |
| MlsI | TGGCCA | 1 cut(s) | 761 |
| MluCI | AATT | 3 cut(s) | 98, 587, 797 |
| MluNI | TGGCCA | 1 cut(s) | 761 |
| MlyI | GAGTC | 3 cut(s) | 110, 397, 560 |
| MmeI | TCCRAC | 2 cut(s) | 75, 127 |
| Mox20I | TGGCCA | 1 cut(s) | 761 |
| MscI | TGGCCA | 1 cut(s) | 761 |
| MseI | TTAA | 2 cut(s) | 90, 1023 |
| Msp20I | TGGCCA | 1 cut(s) | 761 |
| MspA1I | CMGCKG | 7 cut(s) | 395, 536, 782, 919, 941, 1034, 1142 |
| MspI | CCGG | 3 cut(s) | 275, 668, 1071 |
| MvaI | CCWGG | 9 cut(s) | 10, 126, 191, 653, 707, 758, 824, 934, 977 |
| MvnI | CGCG | 2 cut(s) | 461, 1356 |
| NciI | CCSGG | 1 cut(s) | 668 |
| NcoI | CCATGG | 1 cut(s) | 162 |
| NdeI | CATATG | 1 cut(s) | 580 |
| NdeII | GATC | 8 cut(s) | 177, 439, 693, 787, 877, 909, 1122, 1363 |
| NlaIII | CATG | 4 cut(s) | 166, 202, 998, 1054 |
| NmeAIII | GCCGAG | 2 cut(s) | 288, 1365 |
| NmuCI | GTSAC | 3 cut(s) | 3, 400, 529 |
| NotI | GCGGCCGC | 1 cut(s) | 1002 |
| NspI | RCATGY | 2 cut(s) | 202, 998 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 150, 324, 444 |
| PfeI | GAWTC | 3 cut(s) | 661, 1099, 1247 |
| PflFI | GACNNNGTC | 1 cut(s) | 839 |
| PfoI | TCCNGGA | 1 cut(s) | 189 |
| PleI | GAGTC | 3 cut(s) | 110, 397, 560 |
| PpsI | GAGTC | 3 cut(s) | 110, 397, 560 |
| PpuMI | RGGWCCY | 2 cut(s) | 18, 820 |
| PshAI | GACNNNNGTC | 1 cut(s) | 233 |
| Psp124BI | GAGCTC | 2 cut(s) | 384, 684 |
| Psp5II | RGGWCCY | 2 cut(s) | 18, 820 |
| Psp6I | CCWGG | 9 cut(s) | 8, 124, 189, 651, 705, 756, 822, 932, 975 |
| PspFI | CCCAGC | 4 cut(s) | 536, 715, 1134, 1142 |
| PspGI | CCWGG | 9 cut(s) | 8, 124, 189, 651, 705, 756, 822, 932, 975 |
| PspPPI | RGGWCCY | 2 cut(s) | 18, 820 |
| PstNI | CAGNNNCTG | 2 cut(s) | 250, 602 |
| PsuI | RGATCY | 1 cut(s) | 909 |
| PsyI | GACNNNGTC | 1 cut(s) | 839 |
| PvuII | CAGCTG | 1 cut(s) | 919 |
| RsaI | GTAC | 5 cut(s) | 50, 172, 203, 414, 1327 |
| RsaNI | GTAC | 5 cut(s) | 49, 171, 202, 413, 1326 |
| SacI | GAGCTC | 2 cut(s) | 384, 684 |
| SalI | GTCGAC | 2 cut(s) | 236, 446 |
| SaqAI | TTAA | 2 cut(s) | 90, 1023 |
| Sau3AI | GATC | 8 cut(s) | 177, 439, 693, 787, 877, 909, 1122, 1363 |
| SchI | GAGTC | 3 cut(s) | 110, 397, 560 |
| SduI | GDGCHC | 4 cut(s) | 384, 684, 1207, 1346 |
| SfaNI | GCATC | 4 cut(s) | 304, 511, 766, 1139 |
| SinI | GGWCC | 5 cut(s) | 18, 166, 484, 820, 936 |
| Sse9I | AATT | 3 cut(s) | 98, 587, 797 |
| SspMI | CTAG | 4 cut(s) | 113, 215, 542, 851 |
| SstI | GAGCTC | 2 cut(s) | 384, 684 |
| StyI | CCWWGG | 3 cut(s) | 162, 418, 726 |
| TaaI | ACNGT | 6 cut(s) | 170, 235, 529, 1012, 1095, 1325 |
| TaqI | TCGA | 7 cut(s) | 62, 153, 237, 287, 447, 564, 1362 |
| TaqII | GACCGA | 1 cut(s) | 1070 |
| TasI | AATT | 3 cut(s) | 98, 587, 797 |
| TfiI | GAWTC | 3 cut(s) | 661, 1099, 1247 |
| Tru1I | TTAA | 2 cut(s) | 90, 1023 |
| Tru9I | TTAA | 2 cut(s) | 90, 1023 |
| TscAI | CASTG | 2 cut(s) | 534, 1015 |
| TseFI | GTSAC | 3 cut(s) | 3, 400, 529 |
| TseI | GCWGC | 4 cut(s) | 365, 779, 871, 926 |
| Tsp45I | GTSAC | 3 cut(s) | 3, 400, 529 |
| TspRI | CASTG | 2 cut(s) | 534, 1015 |
| Tth111I | GACNNNGTC | 1 cut(s) | 839 |
| VpaK11BI | GGWCC | 5 cut(s) | 18, 166, 484, 820, 936 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 266 |
| XapI | RAATTY | 2 cut(s) | 98, 587 |
| XceI | RCATGY | 2 cut(s) | 202, 998 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 40, 733, 1084 |
| XmiI | GTMKAC | 2 cut(s) | 237, 447 |
| XspI | CTAG | 4 cut(s) | 113, 215, 542, 851 |