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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 714, 968, 1004 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1014 |
| AccBSI | CCGCTC | 3 cut(s) | 433, 712, 1116 |
| AccI | GTMKAC | 1 cut(s) | 470 |
| AccII | CGCG | 5 cut(s) | 62, 111, 211, 285, 1179 |
| AclI | AACGTT | 1 cut(s) | 699 |
| AclWI | GGATC | 2 cut(s) | 780, 799 |
| AcoI | YGGCCR | 2 cut(s) | 780, 1061 |
| AcuI | CTGAAG | 2 cut(s) | 478, 794 |
| AcyI | GRCGYC | 3 cut(s) | 681, 1005, 1154 |
| AfaI | GTAC | 2 cut(s) | 208, 935 |
| AflIII | ACRYGT | 1 cut(s) | 756 |
| AgsI | TTSAA | 2 cut(s) | 911, 1106 |
| AjiI | CACGTC | 2 cut(s) | 334, 514 |
| AjnI | CCWGG | 6 cut(s) | 360, 540, 561, 621, 717, 1093 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 396, 428 |
| AluBI | AGCT | 4 cut(s) | 631, 694, 745, 1058 |
| AluI | AGCT | 4 cut(s) | 631, 694, 745, 1058 |
| Alw26I | GTCTC | 1 cut(s) | 1217 |
| AlwI | GGATC | 2 cut(s) | 780, 799 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 562 |
| Ama87I | CYCGRG | 5 cut(s) | 244, 317, 684, 1117, 1203 |
| ApaI | GGGCCC | 1 cut(s) | 283 |
| AspLEI | GCGC | 6 cut(s) | 62, 97, 111, 135, 1007, 1181 |
| AsuC2I | CCSGG | 5 cut(s) | 277, 685, 686, 1204, 1205 |
| AsuHPI | GGTGA | 4 cut(s) | 38, 413, 413, 869 |
| AvaI | CYCGRG | 5 cut(s) | 244, 317, 684, 1117, 1203 |
| AvaII | GGWCC | 2 cut(s) | 54, 213 |
| BaeGI | GKGCMC | 3 cut(s) | 283, 513, 973 |
| BanI | GGYRCC | 3 cut(s) | 714, 968, 1004 |
| BanII | GRGCYC | 3 cut(s) | 283, 528, 1114 |
| BbvCI | CCTCAGC | 1 cut(s) | 879 |
| BccI | CCATC | 4 cut(s) | 137, 1016, 1054, 1205 |
| BceAI | ACGGC | 4 cut(s) | 122, 503, 873, 1247 |
| BciT130I | CCWGG | 6 cut(s) | 362, 542, 563, 623, 719, 1095 |
| BcnI | CCSGG | 5 cut(s) | 277, 685, 686, 1204, 1205 |
| BcoDI | GTCTC | 1 cut(s) | 1217 |
| BfaI | CTAG | 3 cut(s) | 746, 851, 974 |
| BfmI | CTRYAG | 3 cut(s) | 339, 599, 992 |
| BfoI | RGCGCY | 2 cut(s) | 98, 1008 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 833 |
| Bme18I | GGWCC | 2 cut(s) | 54, 213 |
| BmeT110I | CYCGRG | 5 cut(s) | 244, 317, 684, 1117, 1203 |
| BmgBI | CACGTC | 2 cut(s) | 334, 514 |
| BmrI | ACTGGG | 2 cut(s) | 1024, 1223 |
| BmsI | GCATC | 2 cut(s) | 978, 1020 |
| BmuI | ACTGGG | 2 cut(s) | 1024, 1223 |
| BoxI | GACNNNNGTC | 2 cut(s) | 476, 1229 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 311, 343 |
| BpmI | CTGGAG | 2 cut(s) | 222, 740 |
| Bpu10I | CCTNAGC | 2 cut(s) | 786, 879 |
| BpuMI | CCSGG | 5 cut(s) | 277, 685, 686, 1204, 1205 |
| BsaHI | GRCGYC | 3 cut(s) | 681, 1005, 1154 |
| BsaI | GGTCTC | 1 cut(s) | 1217 |
| BsaJI | CCNNGG | 8 cut(s) | 276, 318, 561, 621, 684, 685, 1093, 1203 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 401, 431 |
| Bse118I | RCCGGY | 3 cut(s) | 56, 97, 1033 |
| Bse1I | ACTGG | 3 cut(s) | 1019, 1229, 1286 |
| BseBI | CCWGG | 6 cut(s) | 362, 542, 563, 623, 719, 1095 |
| BseDI | CCNNGG | 8 cut(s) | 276, 318, 561, 621, 684, 685, 1093, 1203 |
| BseGI | GGATG | 3 cut(s) | 148, 1216, 1269 |
| BseMII | CTCAG | 8 cut(s) | 233, 375, 569, 828, 870, 1158, 1160, 1175 |
| BseNI | ACTGG | 3 cut(s) | 1019, 1229, 1286 |
| BseRI | GAGGAG | 1 cut(s) | 269 |
| BseSI | GKGCMC | 3 cut(s) | 283, 513, 973 |
| BseYI | CCCAGC | 2 cut(s) | 436, 1181 |
| BsgI | GTGCAG | 1 cut(s) | 1061 |
| Bsh1236I | CGCG | 5 cut(s) | 62, 111, 211, 285, 1179 |
| Bsh1285I | CGRYCG | 2 cut(s) | 470, 1038 |
| BshNI | GGYRCC | 3 cut(s) | 714, 968, 1004 |
| BsiEI | CGRYCG | 2 cut(s) | 470, 1038 |
| BsiHKCI | CYCGRG | 5 cut(s) | 244, 317, 684, 1117, 1203 |
| BsiSI | CCGG | 6 cut(s) | 57, 98, 276, 685, 1034, 1204 |
| BslFI | GGGAC | 4 cut(s) | 67, 620, 745, 1217 |
| BsmAI | GTCTC | 1 cut(s) | 1217 |
| BsmFI | GGGAC | 4 cut(s) | 67, 620, 745, 1217 |
| Bso31I | GGTCTC | 1 cut(s) | 1217 |
| BsoBI | CYCGRG | 5 cut(s) | 244, 317, 684, 1117, 1203 |
| Bsp120I | GGGCCC | 1 cut(s) | 279 |
| Bsp1286I | GDGCHC | 5 cut(s) | 283, 513, 528, 973, 1114 |
| Bsp143I | GATC | 3 cut(s) | 772, 804, 840 |
| BspCNI | CTCAG | 8 cut(s) | 232, 376, 570, 829, 871, 1159, 1159, 1174 |
| BspFNI | CGCG | 5 cut(s) | 62, 111, 211, 285, 1179 |
| BspMAI | CTGCAG | 1 cut(s) | 996 |
| BspPI | GGATC | 2 cut(s) | 780, 799 |
| BspT107I | GGYRCC | 3 cut(s) | 714, 968, 1004 |
| BspTNI | GGTCTC | 1 cut(s) | 1217 |
| BsrBI | CCGCTC | 3 cut(s) | 433, 712, 1116 |
| BsrFI | RCCGGY | 3 cut(s) | 56, 97, 1033 |
| BsrI | ACTGG | 3 cut(s) | 1019, 1229, 1286 |
| BssAI | RCCGGY | 3 cut(s) | 56, 97, 1033 |
| BssECI | CCNNGG | 8 cut(s) | 276, 318, 561, 621, 684, 685, 1093, 1203 |
| BssMI | GATC | 3 cut(s) | 772, 804, 840 |
| BssNI | GRCGYC | 3 cut(s) | 681, 1005, 1154 |
| Bst2UI | CCWGG | 6 cut(s) | 362, 542, 563, 623, 719, 1095 |
| Bst4CI | ACNGT | 3 cut(s) | 401, 735, 1219 |
| Bst6I | CTCTTC | 1 cut(s) | 255 |
| BstACI | GRCGYC | 3 cut(s) | 681, 1005, 1154 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1076 |
| BstDEI | CTNAG | 9 cut(s) | 219, 384, 578, 786, 837, 879, 1146, 1161, 1167 |
| BstF5I | GGATG | 3 cut(s) | 148, 1216, 1269 |
| BstFNI | CGCG | 5 cut(s) | 62, 111, 211, 285, 1179 |
| BstH2I | RGCGCY | 2 cut(s) | 98, 1008 |
| BstHHI | GCGC | 6 cut(s) | 62, 97, 111, 135, 1007, 1181 |
| BstKTI | GATC | 3 cut(s) | 775, 807, 843 |
| BstMAI | GTCTC | 1 cut(s) | 1217 |
| BstMBI | GATC | 3 cut(s) | 772, 804, 840 |
| BstMCI | CGRYCG | 2 cut(s) | 470, 1038 |
| BstNI | CCWGG | 6 cut(s) | 362, 542, 563, 623, 719, 1095 |
| BstNSI | RCATGY | 1 cut(s) | 760 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 476, 1229 |
| BstSFI | CTRYAG | 3 cut(s) | 339, 599, 992 |
| BstSLI | GKGCMC | 3 cut(s) | 283, 513, 973 |
| BstUI | CGCG | 5 cut(s) | 62, 111, 211, 285, 1179 |
| BstX2I | RGATCY | 1 cut(s) | 804 |
| BstYI | RGATCY | 1 cut(s) | 804 |
| BtgZI | GCGATG | 1 cut(s) | 684 |
| BtrI | CACGTC | 2 cut(s) | 334, 514 |
| BtsCI | GGATG | 3 cut(s) | 148, 1216, 1269 |
| BtsI | GCAGTG | 1 cut(s) | 1083 |
| BtsIMutI | CAGTG | 2 cut(s) | 944, 1083 |
| CaiI | CAGNNNCTG | 1 cut(s) | 562 |
| CfoI | GCGC | 6 cut(s) | 62, 97, 111, 135, 1007, 1181 |
| Cfr10I | RCCGGY | 3 cut(s) | 56, 97, 1033 |
| Cfr9I | CCCGGG | 2 cut(s) | 684, 1203 |
| CseI | GACGC | 4 cut(s) | 657, 689, 1014, 1162 |
| Csp6I | GTAC | 2 cut(s) | 207, 934 |
| CviAII | CATG | 3 cut(s) | 530, 757, 1100 |
| CviQI | GTAC | 2 cut(s) | 207, 934 |
| DdeI | CTNAG | 9 cut(s) | 219, 384, 578, 786, 837, 879, 1146, 1161, 1167 |
| DinI | GGCGCC | 1 cut(s) | 1006 |
| DpnI | GATC | 3 cut(s) | 774, 806, 842 |
| DpnII | GATC | 3 cut(s) | 772, 804, 840 |
| EaeI | YGGCCR | 2 cut(s) | 780, 1061 |
| Eam1104I | CTCTTC | 1 cut(s) | 255 |
| EarI | CTCTTC | 1 cut(s) | 255 |
| EciI | GGCGGA | 4 cut(s) | 560, 811, 944, 1223 |
| Eco24I | GRGCYC | 3 cut(s) | 283, 528, 1114 |
| Eco31I | GGTCTC | 1 cut(s) | 1217 |
| Eco47I | GGWCC | 2 cut(s) | 54, 213 |
| Eco57I | CTGAAG | 2 cut(s) | 478, 794 |
| Eco88I | CYCGRG | 5 cut(s) | 244, 317, 684, 1117, 1203 |
| EcoO109I | RGGNCCY | 2 cut(s) | 279, 310 |
| EcoRII | CCWGG | 6 cut(s) | 360, 540, 561, 621, 717, 1093 |
| EcoT38I | GRGCYC | 3 cut(s) | 283, 528, 1114 |
| EgeI | GGCGCC | 1 cut(s) | 1006 |
| EheI | GGCGCC | 1 cut(s) | 1006 |
| FaeI | CATG | 3 cut(s) | 533, 760, 1103 |
| FaiI | YATR | 8 cut(s) | 104, 155, 341, 531, 758, 916, 918, 1101 |
| FaqI | GGGAC | 4 cut(s) | 67, 620, 745, 1217 |
| FatI | CATG | 3 cut(s) | 529, 756, 1099 |
| FblI | GTMKAC | 1 cut(s) | 470 |
| FokI | GGATG | 3 cut(s) | 155, 1223, 1256 |
| FriOI | GRGCYC | 3 cut(s) | 283, 528, 1114 |
| FspBI | CTAG | 3 cut(s) | 746, 851, 974 |
| GlaI | GCGC | 6 cut(s) | 61, 96, 110, 134, 1006, 1180 |
| GsaI | CCCAGC | 2 cut(s) | 440, 1185 |
| GsuI | CTGGAG | 2 cut(s) | 222, 740 |
| HaeII | RGCGCY | 2 cut(s) | 98, 1008 |
| HapII | CCGG | 6 cut(s) | 57, 98, 276, 685, 1034, 1204 |
| HgaI | GACGC | 4 cut(s) | 657, 689, 1014, 1162 |
| HhaI | GCGC | 6 cut(s) | 62, 97, 111, 135, 1007, 1181 |
| Hin1I | GRCGYC | 3 cut(s) | 681, 1005, 1154 |
| Hin1II | CATG | 3 cut(s) | 533, 760, 1103 |
| Hin6I | GCGC | 6 cut(s) | 60, 95, 109, 133, 1005, 1179 |
| HinP1I | GCGC | 6 cut(s) | 60, 95, 109, 133, 1005, 1179 |
| HincII | GTYRAC | 2 cut(s) | 236, 471 |
| HindII | GTYRAC | 2 cut(s) | 236, 471 |
| HinfI | GANTC | 8 cut(s) | 242, 365, 485, 548, 818, 911, 1128, 1142 |
| HpaII | CCGG | 6 cut(s) | 57, 98, 276, 685, 1034, 1204 |
| HphI | GGTGA | 4 cut(s) | 38, 413, 413, 869 |
| Hpy166II | GTNNAC | 4 cut(s) | 236, 404, 471, 1267 |
| Hpy188I | TCNGA | 4 cut(s) | 331, 1149, 1168, 1251 |
| Hpy8I | GTNNAC | 4 cut(s) | 236, 404, 471, 1267 |
| Hpy99I | CGWCG | 6 cut(s) | 142, 178, 401, 518, 651, 1030 |
| HpyAV | CCTTC | 9 cut(s) | 502, 577, 610, 818, 934, 955, 994, 1100, 1238 |
| HpyCH4III | ACNGT | 3 cut(s) | 401, 735, 1219 |
| HpyCH4IV | ACGT | 3 cut(s) | 333, 513, 699 |
| HpyCH4V | TGCA | 3 cut(s) | 677, 994, 1042 |
| HpyF3I | CTNAG | 9 cut(s) | 219, 384, 578, 786, 837, 879, 1146, 1161, 1167 |
| HpySE526I | ACGT | 3 cut(s) | 333, 513, 699 |
| Hsp92I | GRCGYC | 3 cut(s) | 681, 1005, 1154 |
| Hsp92II | CATG | 3 cut(s) | 533, 760, 1103 |
| HspAI | GCGC | 6 cut(s) | 60, 95, 109, 133, 1005, 1179 |
| KasI | GGCGCC | 1 cut(s) | 1004 |
| KroI | GCCGGC | 1 cut(s) | 97 |
| KroNI | GCCGGC | 1 cut(s) | 99 |
| Kzo9I | GATC | 3 cut(s) | 772, 804, 840 |
| LmnI | GCTCC | 6 cut(s) | 166, 328, 531, 721, 1084, 1109 |
| LweI | GCATC | 2 cut(s) | 978, 1020 |
| MaeI | CTAG | 3 cut(s) | 746, 851, 974 |
| MaeII | ACGT | 3 cut(s) | 333, 513, 699 |
| MaeIII | GTNAC | 3 cut(s) | 26, 148, 1173 |
| MalI | GATC | 3 cut(s) | 774, 806, 842 |
| MbiI | CCGCTC | 3 cut(s) | 433, 712, 1116 |
| MboI | GATC | 3 cut(s) | 772, 804, 840 |
| MboII | GAAGA | 4 cut(s) | 133, 272, 307, 805 |
| MflI | RGATCY | 1 cut(s) | 804 |
| MhlI | GDGCHC | 5 cut(s) | 283, 513, 528, 973, 1114 |
| Mly113I | GGCGCC | 1 cut(s) | 1005 |
| MlyI | GAGTC | 4 cut(s) | 236, 359, 557, 827 |
| MmeI | TCCRAC | 1 cut(s) | 144 |
| MroNI | GCCGGC | 1 cut(s) | 97 |
| MslI | CAYNNNNRTG | 1 cut(s) | 21 |
| MspA1I | CMGCKG | 4 cut(s) | 41, 197, 814, 905 |
| MspI | CCGG | 6 cut(s) | 57, 98, 276, 685, 1034, 1204 |
| MvaI | CCWGG | 6 cut(s) | 362, 542, 563, 623, 719, 1095 |
| MvnI | CGCG | 5 cut(s) | 62, 111, 211, 285, 1179 |
| NaeI | GCCGGC | 1 cut(s) | 99 |
| NarI | GGCGCC | 1 cut(s) | 1005 |
| NciI | CCSGG | 5 cut(s) | 277, 685, 686, 1204, 1205 |
| NdeII | GATC | 3 cut(s) | 772, 804, 840 |
| NgoMIV | GCCGGC | 1 cut(s) | 97 |
| NlaIII | CATG | 3 cut(s) | 533, 760, 1103 |
| NmeAIII | GCCGAG | 1 cut(s) | 1039 |
| NmuCI | GTSAC | 2 cut(s) | 26, 1173 |
| NspI | RCATGY | 1 cut(s) | 760 |
| PciI | ACATGT | 1 cut(s) | 756 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 182 |
| PdiI | GCCGGC | 1 cut(s) | 99 |
| PfeI | GAWTC | 4 cut(s) | 485, 911, 1128, 1142 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1014 |
| PleI | GAGTC | 4 cut(s) | 236, 359, 556, 826 |
| PluTI | GGCGCC | 1 cut(s) | 1008 |
| PpsI | GAGTC | 4 cut(s) | 236, 359, 556, 826 |
| PscI | ACATGT | 1 cut(s) | 756 |
| PshAI | GACNNNNGTC | 2 cut(s) | 476, 1229 |
| Psp1406I | AACGTT | 1 cut(s) | 699 |
| Psp6I | CCWGG | 6 cut(s) | 360, 540, 561, 621, 717, 1093 |
| PspFI | CCCAGC | 2 cut(s) | 436, 1181 |
| PspGI | CCWGG | 6 cut(s) | 360, 540, 561, 621, 717, 1093 |
| PspOMI | GGGCCC | 1 cut(s) | 279 |
| PstI | CTGCAG | 1 cut(s) | 996 |
| PstNI | CAGNNNCTG | 1 cut(s) | 562 |
| PsuI | RGATCY | 1 cut(s) | 804 |
| RsaI | GTAC | 2 cut(s) | 208, 935 |
| RsaNI | GTAC | 2 cut(s) | 207, 934 |
| RseI | CAYNNNNRTG | 1 cut(s) | 21 |
| SalI | GTCGAC | 1 cut(s) | 469 |
| Sau3AI | GATC | 3 cut(s) | 772, 804, 840 |
| SchI | GAGTC | 4 cut(s) | 236, 359, 557, 827 |
| SduI | GDGCHC | 5 cut(s) | 283, 513, 528, 973, 1114 |
| SfaNI | GCATC | 2 cut(s) | 978, 1020 |
| SfcI | CTRYAG | 3 cut(s) | 339, 599, 992 |
| SfoI | GGCGCC | 1 cut(s) | 1006 |
| SinI | GGWCC | 2 cut(s) | 54, 213 |
| SmaI | CCCGGG | 2 cut(s) | 686, 1205 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 21 |
| SspDI | GGCGCC | 1 cut(s) | 1004 |
| SspMI | CTAG | 3 cut(s) | 746, 851, 974 |
| TaaI | ACNGT | 3 cut(s) | 401, 735, 1219 |
| TaiI | ACGT | 3 cut(s) | 336, 516, 702 |
| TaqI | TCGA | 4 cut(s) | 119, 470, 642, 1028 |
| TaqII | GACCGA | 2 cut(s) | 456, 965 |
| TatI | WGTACW | 1 cut(s) | 933 |
| TfiI | GAWTC | 4 cut(s) | 485, 911, 1128, 1142 |
| TscAI | CASTG | 2 cut(s) | 951, 1090 |
| TseFI | GTSAC | 2 cut(s) | 26, 1173 |
| Tsp45I | GTSAC | 2 cut(s) | 26, 1173 |
| TspGWI | ACGGA | 2 cut(s) | 155, 1067 |
| TspMI | CCCGGG | 2 cut(s) | 684, 1203 |
| TspRI | CASTG | 2 cut(s) | 951, 1090 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1014 |
| VpaK11BI | GGWCC | 2 cut(s) | 54, 213 |
| XceI | RCATGY | 1 cut(s) | 760 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 17, 160, 559 |
| XmaI | CCCGGG | 2 cut(s) | 684, 1203 |
| XmiI | GTMKAC | 1 cut(s) | 470 |
| XspI | CTAG | 3 cut(s) | 746, 851, 974 |