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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 25, 925 |
| AatII | GACGTC | 1 cut(s) | 468 |
| Acc65I | GGTACC | 1 cut(s) | 1004 |
| AccB1I | GGYRCC | 3 cut(s) | 752, 788, 1004 |
| AccBSI | CCGCTC | 5 cut(s) | 190, 217, 430, 508, 559 |
| AccII | CGCG | 7 cut(s) | 38, 250, 284, 471, 680, 1064, 1085 |
| AcoI | YGGCCR | 4 cut(s) | 21, 438, 486, 681 |
| AcuI | CTGAAG | 2 cut(s) | 262, 797 |
| AcvI | CACGTG | 1 cut(s) | 968 |
| AcyI | GRCGYC | 4 cut(s) | 332, 465, 753, 789 |
| AfaI | GTAC | 4 cut(s) | 168, 673, 883, 1006 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 352, 353, 612, 878, 923, 958 |
| AflII | CTTAAG | 1 cut(s) | 719 |
| AflIII | ACRYGT | 1 cut(s) | 517 |
| AgsI | TTSAA | 4 cut(s) | 665, 695, 703, 1079 |
| AjnI | CCWGG | 2 cut(s) | 755, 865 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 179, 211 |
| AluBI | AGCT | 5 cut(s) | 145, 361, 478, 718, 1031 |
| AluI | AGCT | 5 cut(s) | 145, 361, 478, 718, 1031 |
| Alw21I | GWGCWC | 1 cut(s) | 363 |
| Alw26I | GTCTC | 4 cut(s) | 33, 406, 526, 845 |
| Ama87I | CYCGRG | 3 cut(s) | 889, 993, 1032 |
| AoxI | GGCC | 8 cut(s) | 21, 66, 84, 438, 486, 681, 759, 907 |
| ApaI | GGGCCC | 1 cut(s) | 70 |
| ApeKI | GCWGC | 5 cut(s) | 95, 340, 550, 595, 894 |
| Asp718I | GGTACC | 1 cut(s) | 1004 |
| AspLEI | GCGC | 7 cut(s) | 15, 130, 252, 284, 755, 791, 1066 |
| AspS9I | GGNCC | 8 cut(s) | 66, 67, 85, 759, 869, 908, 927, 1038 |
| AsuC2I | CCSGG | 2 cut(s) | 994, 995 |
| AsuHPI | GGTGA | 1 cut(s) | 653 |
| AvaI | CYCGRG | 3 cut(s) | 889, 993, 1032 |
| AvaII | GGWCC | 3 cut(s) | 869, 927, 1038 |
| BaeGI | GKGCMC | 1 cut(s) | 70 |
| BalI | TGGCCA | 2 cut(s) | 440, 488 |
| BanI | GGYRCC | 3 cut(s) | 752, 788, 1004 |
| BanII | GRGCYC | 4 cut(s) | 70, 363, 384, 1017 |
| BbrPI | CACGTG | 1 cut(s) | 968 |
| BbsI | GAAGAC | 1 cut(s) | 110 |
| Bbv12I | GWGCWC | 1 cut(s) | 363 |
| BbvCI | CCTCAGC | 1 cut(s) | 635 |
| BbvI | GCAGC | 5 cut(s) | 82, 352, 537, 607, 906 |
| BccI | CCATC | 4 cut(s) | 213, 497, 610, 995 |
| BceAI | ACGGC | 3 cut(s) | 36, 57, 273 |
| BciT130I | CCWGG | 2 cut(s) | 757, 867 |
| BcnI | CCSGG | 2 cut(s) | 994, 995 |
| BcoDI | GTCTC | 4 cut(s) | 33, 406, 526, 845 |
| BfaI | CTAG | 1 cut(s) | 146 |
| BfmI | CTRYAG | 1 cut(s) | 551 |
| BfoI | RGCGCY | 4 cut(s) | 16, 131, 756, 792 |
| BfrI | CTTAAG | 1 cut(s) | 719 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 92 |
| Bme1390I | CCNGG | 4 cut(s) | 757, 867, 994, 995 |
| Bme18I | GGWCC | 3 cut(s) | 869, 927, 1038 |
| BmeT110I | CYCGRG | 3 cut(s) | 889, 993, 1032 |
| BmgT120I | GGNCC | 8 cut(s) | 66, 67, 85, 759, 869, 908, 927, 1038 |
| BmrFI | CCNGG | 4 cut(s) | 757, 867, 994, 995 |
| BmrI | ACTGGG | 1 cut(s) | 1014 |
| BmuI | ACTGGG | 1 cut(s) | 1014 |
| BoxI | GACNNNNGTC | 1 cut(s) | 857 |
| BpiI | GAAGAC | 1 cut(s) | 110 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 134, 166 |
| BpmI | CTGGAG | 3 cut(s) | 23, 368, 1001 |
| Bpu10I | CCTNAGC | 3 cut(s) | 362, 570, 635 |
| BpuMI | CCSGG | 2 cut(s) | 994, 995 |
| BsaAI | YACGTR | 1 cut(s) | 968 |
| BsaHI | GRCGYC | 4 cut(s) | 332, 465, 753, 789 |
| BsaJI | CCNNGG | 6 cut(s) | 441, 469, 678, 756, 993, 1083 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 179, 209 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 352, 353, 612, 878, 923, 958 |
| Bse118I | RCCGGY | 2 cut(s) | 829, 878 |
| Bse1I | ACTGG | 2 cut(s) | 420, 1020 |
| BseBI | CCWGG | 2 cut(s) | 757, 867 |
| BseDI | CCNNGG | 6 cut(s) | 441, 469, 678, 756, 993, 1083 |
| BseGI | GGATG | 3 cut(s) | 455, 621, 1006 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 352, 353, 612, 878, 923, 958 |
| BseMII | CTCAG | 3 cut(s) | 376, 626, 647 |
| BseNI | ACTGG | 2 cut(s) | 420, 1020 |
| BseSI | GKGCMC | 1 cut(s) | 70 |
| BseX3I | CGGCCG | 2 cut(s) | 21, 681 |
| BseXI | GCAGC | 5 cut(s) | 82, 352, 537, 607, 906 |
| BseYI | CCCAGC | 3 cut(s) | 220, 930, 942 |
| BsgI | GTGCAG | 2 cut(s) | 614, 711 |
| Bsh1236I | CGCG | 7 cut(s) | 38, 250, 284, 471, 680, 1064, 1085 |
| Bsh1285I | CGRYCG | 4 cut(s) | 24, 684, 1058, 1062 |
| BshFI | GGCC | 8 cut(s) | 23, 68, 86, 440, 488, 683, 761, 909 |
| BshNI | GGYRCC | 3 cut(s) | 752, 788, 1004 |
| BsiEI | CGRYCG | 4 cut(s) | 24, 684, 1058, 1062 |
| BsiHKAI | GWGCWC | 1 cut(s) | 363 |
| BsiHKCI | CYCGRG | 3 cut(s) | 889, 993, 1032 |
| BsiSI | CCGG | 7 cut(s) | 16, 536, 830, 848, 879, 972, 994 |
| BslFI | GGGAC | 3 cut(s) | 321, 827, 913 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 352, 353, 612, 878, 923, 958 |
| BsmAI | GTCTC | 4 cut(s) | 33, 406, 526, 845 |
| BsmFI | GGGAC | 3 cut(s) | 321, 827, 913 |
| BsnI | GGCC | 8 cut(s) | 23, 68, 86, 440, 488, 683, 761, 909 |
| BsoBI | CYCGRG | 3 cut(s) | 889, 993, 1032 |
| Bsp120I | GGGCCC | 1 cut(s) | 66 |
| Bsp1286I | GDGCHC | 4 cut(s) | 70, 363, 384, 1017 |
| Bsp143I | GATC | 3 cut(s) | 540, 1042, 1055 |
| BspANI | GGCC | 8 cut(s) | 23, 68, 86, 440, 488, 683, 761, 909 |
| BspCNI | CTCAG | 3 cut(s) | 375, 627, 648 |
| BspFNI | CGCG | 7 cut(s) | 38, 250, 284, 471, 680, 1064, 1085 |
| BspHI | TCATGA | 1 cut(s) | 174 |
| BspMAI | CTGCAG | 1 cut(s) | 555 |
| BspT107I | GGYRCC | 3 cut(s) | 752, 788, 1004 |
| BspTI | CTTAAG | 1 cut(s) | 719 |
| BsrBI | CCGCTC | 5 cut(s) | 190, 217, 430, 508, 559 |
| BsrFI | RCCGGY | 2 cut(s) | 829, 878 |
| BsrI | ACTGG | 2 cut(s) | 420, 1020 |
| BssAI | RCCGGY | 2 cut(s) | 829, 878 |
| BssECI | CCNNGG | 6 cut(s) | 441, 469, 678, 756, 993, 1083 |
| BssMI | GATC | 3 cut(s) | 540, 1042, 1055 |
| BssNI | GRCGYC | 4 cut(s) | 332, 465, 753, 789 |
| BssT1I | CCWWGG | 1 cut(s) | 441 |
| Bst2UI | CCWGG | 2 cut(s) | 757, 867 |
| Bst6I | CTCTTC | 2 cut(s) | 36, 206 |
| BstACI | GRCGYC | 4 cut(s) | 332, 465, 753, 789 |
| BstAFI | CTTAAG | 1 cut(s) | 719 |
| BstBAI | YACGTR | 1 cut(s) | 968 |
| BstC8I | GCNNGC | 9 cut(s) | 70, 132, 215, 428, 438, 476, 751, 831, 1051 |
| BstDEI | CTNAG | 4 cut(s) | 362, 570, 635, 656 |
| BstDSI | CCRYGG | 3 cut(s) | 469, 678, 1083 |
| BstEII | GGTNACC | 1 cut(s) | 646 |
| BstF5I | GGATG | 3 cut(s) | 455, 621, 1006 |
| BstFNI | CGCG | 7 cut(s) | 38, 250, 284, 471, 680, 1064, 1085 |
| BstH2I | RGCGCY | 4 cut(s) | 16, 131, 756, 792 |
| BstHHI | GCGC | 7 cut(s) | 15, 130, 252, 284, 755, 791, 1066 |
| BstKTI | GATC | 3 cut(s) | 543, 1045, 1058 |
| BstMAI | GTCTC | 4 cut(s) | 33, 406, 526, 845 |
| BstMBI | GATC | 3 cut(s) | 540, 1042, 1055 |
| BstMCI | CGRYCG | 4 cut(s) | 24, 684, 1058, 1062 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 92, 556, 683, 686, 695, 746, 830 |
| BstNI | CCWGG | 2 cut(s) | 757, 867 |
| BstNSI | RCATGY | 1 cut(s) | 521 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 857 |
| BstPI | GGTNACC | 1 cut(s) | 646 |
| BstSCI | CCNGG | 4 cut(s) | 755, 865, 992, 993 |
| BstSFI | CTRYAG | 1 cut(s) | 551 |
| BstSLI | GKGCMC | 1 cut(s) | 70 |
| BstUI | CGCG | 7 cut(s) | 38, 250, 284, 471, 680, 1064, 1085 |
| BstV1I | GCAGC | 5 cut(s) | 82, 352, 537, 607, 906 |
| BstV2I | GAAGAC | 1 cut(s) | 110 |
| BstZI | CGGCCG | 2 cut(s) | 21, 681 |
| BsuRI | GGCC | 8 cut(s) | 23, 68, 86, 440, 488, 683, 761, 909 |
| BtgI | CCRYGG | 3 cut(s) | 469, 678, 1083 |
| BtsCI | GGATG | 3 cut(s) | 455, 621, 1006 |
| BtsIMutI | CAGTG | 1 cut(s) | 728 |
| Cac8I | GCNNGC | 9 cut(s) | 70, 132, 215, 428, 438, 476, 751, 831, 1051 |
| CciI | TCATGA | 1 cut(s) | 174 |
| CciNI | GCGGCCGC | 1 cut(s) | 681 |
| CfoI | GCGC | 7 cut(s) | 15, 130, 252, 284, 755, 791, 1066 |
| Cfr10I | RCCGGY | 2 cut(s) | 829, 878 |
| Cfr13I | GGNCC | 8 cut(s) | 66, 67, 85, 759, 869, 908, 927, 1038 |
| Cfr42I | CCGCGG | 3 cut(s) | 472, 681, 1086 |
| Cfr9I | CCCGGG | 1 cut(s) | 993 |
| CseI | GACGC | 3 cut(s) | 44, 321, 830 |
| Csp6I | GTAC | 4 cut(s) | 167, 672, 882, 1005 |
| CviAII | CATG | 2 cut(s) | 175, 518 |
| CviQI | GTAC | 4 cut(s) | 167, 672, 882, 1005 |
| DdeI | CTNAG | 4 cut(s) | 362, 570, 635, 656 |
| DinI | GGCGCC | 2 cut(s) | 754, 790 |
| DpnI | GATC | 3 cut(s) | 542, 1044, 1057 |
| DpnII | GATC | 3 cut(s) | 540, 1042, 1055 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 25, 925 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 25, 925 |
| EaeI | YGGCCR | 4 cut(s) | 21, 438, 486, 681 |
| EagI | CGGCCG | 2 cut(s) | 21, 681 |
| Eam1104I | CTCTTC | 2 cut(s) | 36, 206 |
| EarI | CTCTTC | 2 cut(s) | 36, 206 |
| EciI | GGCGGA | 3 cut(s) | 413, 595, 1013 |
| Ecl136II | GAGCTC | 1 cut(s) | 361 |
| EclXI | CGGCCG | 2 cut(s) | 21, 681 |
| Eco130I | CCWWGG | 1 cut(s) | 441 |
| Eco24I | GRGCYC | 4 cut(s) | 70, 363, 384, 1017 |
| Eco47I | GGWCC | 3 cut(s) | 869, 927, 1038 |
| Eco52I | CGGCCG | 2 cut(s) | 21, 681 |
| Eco53kI | GAGCTC | 1 cut(s) | 361 |
| Eco57I | CTGAAG | 2 cut(s) | 262, 797 |
| Eco72I | CACGTG | 1 cut(s) | 968 |
| Eco88I | CYCGRG | 3 cut(s) | 889, 993, 1032 |
| Eco91I | GGTNACC | 1 cut(s) | 646 |
| EcoICRI | GAGCTC | 1 cut(s) | 361 |
| EcoO109I | RGGNCCY | 2 cut(s) | 66, 927 |
| EcoO65I | GGTNACC | 1 cut(s) | 646 |
| EcoRII | CCWGG | 2 cut(s) | 755, 865 |
| EcoT14I | CCWWGG | 1 cut(s) | 441 |
| EcoT38I | GRGCYC | 4 cut(s) | 70, 363, 384, 1017 |
| EgeI | GGCGCC | 2 cut(s) | 754, 790 |
| EheI | GGCGCC | 2 cut(s) | 754, 790 |
| ErhI | CCWWGG | 1 cut(s) | 441 |
| FaeI | CATG | 2 cut(s) | 178, 521 |
| FaqI | GGGAC | 3 cut(s) | 321, 827, 913 |
| FatI | CATG | 2 cut(s) | 174, 517 |
| FokI | GGATG | 3 cut(s) | 462, 628, 1013 |
| FriOI | GRGCYC | 4 cut(s) | 70, 363, 384, 1017 |
| FspBI | CTAG | 1 cut(s) | 146 |
| GlaI | GCGC | 7 cut(s) | 14, 129, 251, 283, 754, 790, 1065 |
| GsaI | CCCAGC | 3 cut(s) | 224, 934, 946 |
| GsuI | CTGGAG | 3 cut(s) | 23, 368, 1001 |
| HaeII | RGCGCY | 4 cut(s) | 16, 131, 756, 792 |
| HaeIII | GGCC | 8 cut(s) | 23, 68, 86, 440, 488, 683, 761, 909 |
| HapII | CCGG | 7 cut(s) | 16, 536, 830, 848, 879, 972, 994 |
| HgaI | GACGC | 3 cut(s) | 44, 321, 830 |
| HhaI | GCGC | 7 cut(s) | 15, 130, 252, 284, 755, 791, 1066 |
| Hin1I | GRCGYC | 4 cut(s) | 332, 465, 753, 789 |
| Hin1II | CATG | 2 cut(s) | 178, 521 |
| Hin6I | GCGC | 7 cut(s) | 13, 128, 250, 282, 753, 789, 1064 |
| HinP1I | GCGC | 7 cut(s) | 13, 128, 250, 282, 753, 789, 1064 |
| HinfI | GANTC | 3 cut(s) | 26, 149, 602 |
| HpaII | CCGG | 7 cut(s) | 16, 536, 830, 848, 879, 972, 994 |
| HphI | GGTGA | 1 cut(s) | 653 |
| Hpy188I | TCNGA | 5 cut(s) | 78, 377, 958, 1026, 1042 |
| Hpy188III | TCNNGA | 5 cut(s) | 32, 175, 314, 385, 980 |
| Hpy99I | CGWCG | 4 cut(s) | 259, 337, 922, 958 |
| HpyAV | CCTTC | 7 cut(s) | 76, 176, 286, 659, 739, 778, 917 |
| HpyCH4IV | ACGT | 2 cut(s) | 465, 967 |
| HpyCH4V | TGCA | 4 cut(s) | 461, 553, 595, 728 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 92, 556, 683, 686, 695, 746, 830 |
| HpyF3I | CTNAG | 4 cut(s) | 362, 570, 635, 656 |
| HpySE526I | ACGT | 2 cut(s) | 465, 967 |
| Hsp92I | GRCGYC | 4 cut(s) | 332, 465, 753, 789 |
| Hsp92II | CATG | 2 cut(s) | 178, 521 |
| HspAI | GCGC | 7 cut(s) | 13, 128, 250, 282, 753, 789, 1064 |
| KasI | GGCGCC | 2 cut(s) | 752, 788 |
| KflI | GGGWCCC | 1 cut(s) | 927 |
| KpnI | GGTACC | 1 cut(s) | 1008 |
| KroI | GCCGGC | 1 cut(s) | 829 |
| KroNI | GCCGGC | 1 cut(s) | 831 |
| KspI | CCGCGG | 3 cut(s) | 472, 681, 1086 |
| Kzo9I | GATC | 3 cut(s) | 540, 1042, 1055 |
| LmnI | GCTCC | 5 cut(s) | 187, 387, 505, 532, 556 |
| Lsp1109I | GCAGC | 5 cut(s) | 82, 352, 537, 607, 906 |
| MaeI | CTAG | 1 cut(s) | 146 |
| MaeII | ACGT | 2 cut(s) | 465, 967 |
| MaeIII | GTNAC | 4 cut(s) | 452, 497, 646, 963 |
| MalI | GATC | 3 cut(s) | 542, 1044, 1057 |
| MbiI | CCGCTC | 5 cut(s) | 190, 217, 430, 508, 559 |
| MboI | GATC | 3 cut(s) | 540, 1042, 1055 |
| MboII | GAAGA | 5 cut(s) | 53, 91, 115, 193, 380 |
| MfeI | CAATTG | 1 cut(s) | 261 |
| MhlI | GDGCHC | 4 cut(s) | 70, 363, 384, 1017 |
| MlsI | TGGCCA | 2 cut(s) | 440, 488 |
| MluCI | AATT | 1 cut(s) | 261 |
| MluNI | TGGCCA | 2 cut(s) | 440, 488 |
| Mly113I | GGCGCC | 2 cut(s) | 753, 789 |
| MlyI | GAGTC | 3 cut(s) | 35, 143, 611 |
| MmeI | TCCRAC | 3 cut(s) | 510, 936, 1049 |
| Mox20I | TGGCCA | 2 cut(s) | 440, 488 |
| MroNI | GCCGGC | 1 cut(s) | 829 |
| MscI | TGGCCA | 2 cut(s) | 440, 488 |
| MseI | TTAA | 1 cut(s) | 720 |
| MslI | CAYNNNNRTG | 1 cut(s) | 590 |
| Msp20I | TGGCCA | 2 cut(s) | 440, 488 |
| MspA1I | CMGCKG | 7 cut(s) | 471, 598, 680, 689, 897, 1085, 1104 |
| MspCI | CTTAAG | 1 cut(s) | 719 |
| MspI | CCGG | 7 cut(s) | 16, 536, 830, 848, 879, 972, 994 |
| MspR9I | CCNGG | 4 cut(s) | 757, 867, 994, 995 |
| MunI | CAATTG | 1 cut(s) | 261 |
| MvaI | CCWGG | 2 cut(s) | 757, 867 |
| MvnI | CGCG | 7 cut(s) | 38, 250, 284, 471, 680, 1064, 1085 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 92, 556, 683, 686, 695, 746, 830 |
| NaeI | GCCGGC | 1 cut(s) | 831 |
| NarI | GGCGCC | 2 cut(s) | 753, 789 |
| NciI | CCSGG | 2 cut(s) | 994, 995 |
| NdeII | GATC | 3 cut(s) | 540, 1042, 1055 |
| NgoMIV | GCCGGC | 1 cut(s) | 829 |
| NlaIII | CATG | 2 cut(s) | 178, 521 |
| NmeAIII | GCCGAG | 2 cut(s) | 49, 184 |
| NmuCI | GTSAC | 3 cut(s) | 452, 497, 963 |
| NotI | GCGGCCGC | 1 cut(s) | 681 |
| NspI | RCATGY | 1 cut(s) | 521 |
| PaeR7I | CTCGAG | 1 cut(s) | 1032 |
| PagI | TCATGA | 1 cut(s) | 174 |
| PciI | ACATGT | 1 cut(s) | 517 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 321 |
| PdiI | GCCGGC | 1 cut(s) | 831 |
| PflFI | GACNNNGTC | 2 cut(s) | 800, 952 |
| Ple19I | CGATCG | 1 cut(s) | 1058 |
| PleI | GAGTC | 3 cut(s) | 34, 143, 610 |
| PluTI | GGCGCC | 2 cut(s) | 756, 792 |
| PmaCI | CACGTG | 1 cut(s) | 968 |
| PmlI | CACGTG | 1 cut(s) | 968 |
| PpsI | GAGTC | 3 cut(s) | 34, 143, 610 |
| Ppu21I | YACGTR | 1 cut(s) | 968 |
| PpuMI | RGGWCCY | 1 cut(s) | 927 |
| PscI | ACATGT | 1 cut(s) | 517 |
| PshAI | GACNNNNGTC | 1 cut(s) | 857 |
| Psp124BI | GAGCTC | 1 cut(s) | 363 |
| Psp5II | RGGWCCY | 1 cut(s) | 927 |
| Psp6I | CCWGG | 2 cut(s) | 755, 865 |
| PspCI | CACGTG | 1 cut(s) | 968 |
| PspEI | GGTNACC | 1 cut(s) | 646 |
| PspFI | CCCAGC | 3 cut(s) | 220, 930, 942 |
| PspGI | CCWGG | 2 cut(s) | 755, 865 |
| PspOMI | GGGCCC | 1 cut(s) | 66 |
| PspPI | GGNCC | 8 cut(s) | 66, 67, 85, 759, 869, 908, 927, 1038 |
| PspPPI | RGGWCCY | 1 cut(s) | 927 |
| PspXI | VCTCGAGB | 1 cut(s) | 1032 |
| PstI | CTGCAG | 1 cut(s) | 555 |
| PsyI | GACNNNGTC | 2 cut(s) | 800, 952 |
| PvuI | CGATCG | 1 cut(s) | 1058 |
| RsaI | GTAC | 4 cut(s) | 168, 673, 883, 1006 |
| RsaNI | GTAC | 4 cut(s) | 167, 672, 882, 1005 |
| RseI | CAYNNNNRTG | 1 cut(s) | 590 |
| SacI | GAGCTC | 1 cut(s) | 363 |
| SacII | CCGCGG | 3 cut(s) | 472, 681, 1086 |
| SaqAI | TTAA | 1 cut(s) | 720 |
| Sau3AI | GATC | 3 cut(s) | 540, 1042, 1055 |
| Sau96I | GGNCC | 8 cut(s) | 66, 67, 85, 759, 869, 908, 927, 1038 |
| SchI | GAGTC | 3 cut(s) | 35, 143, 611 |
| ScrFI | CCNGG | 4 cut(s) | 757, 867, 994, 995 |
| SduI | GDGCHC | 4 cut(s) | 70, 363, 384, 1017 |
| SfcI | CTRYAG | 1 cut(s) | 551 |
| SfoI | GGCGCC | 2 cut(s) | 754, 790 |
| Sfr274I | CTCGAG | 1 cut(s) | 1032 |
| Sfr303I | CCGCGG | 3 cut(s) | 472, 681, 1086 |
| SgrBI | CCGCGG | 3 cut(s) | 472, 681, 1086 |
| SinI | GGWCC | 3 cut(s) | 869, 927, 1038 |
| SlaI | CTCGAG | 1 cut(s) | 1032 |
| SmaI | CCCGGG | 1 cut(s) | 995 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 590 |
| SmlI | CTYRAG | 2 cut(s) | 719, 1032 |
| SmoI | CTYRAG | 2 cut(s) | 719, 1032 |
| Sse9I | AATT | 1 cut(s) | 261 |
| SspDI | GGCGCC | 2 cut(s) | 752, 788 |
| SspMI | CTAG | 1 cut(s) | 146 |
| SstI | GAGCTC | 1 cut(s) | 363 |
| StyD4I | CCNGG | 4 cut(s) | 755, 865, 992, 993 |
| StyI | CCWWGG | 1 cut(s) | 441 |
| TaiI | ACGT | 2 cut(s) | 468, 970 |
| TaqI | TCGA | 3 cut(s) | 335, 1033, 1092 |
| TaqII | GACCGA | 1 cut(s) | 1048 |
| TasI | AATT | 1 cut(s) | 261 |
| Tru1I | TTAA | 1 cut(s) | 720 |
| Tru9I | TTAA | 1 cut(s) | 720 |
| TscAI | CASTG | 1 cut(s) | 735 |
| TseFI | GTSAC | 3 cut(s) | 452, 497, 963 |
| TseI | GCWGC | 5 cut(s) | 95, 340, 550, 595, 894 |
| Tsp45I | GTSAC | 3 cut(s) | 452, 497, 963 |
| TspDTI | ATGAA | 3 cut(s) | 163, 528, 641 |
| TspGWI | ACGGA | 1 cut(s) | 935 |
| TspMI | CCCGGG | 1 cut(s) | 993 |
| TspRI | CASTG | 1 cut(s) | 735 |
| Tth111I | GACNNNGTC | 2 cut(s) | 800, 952 |
| Vha464I | CTTAAG | 1 cut(s) | 719 |
| VpaK11BI | GGWCC | 3 cut(s) | 869, 927, 1038 |
| XceI | RCATGY | 1 cut(s) | 521 |
| XhoI | CTCGAG | 1 cut(s) | 1032 |
| XmaI | CCCGGG | 1 cut(s) | 993 |
| XspI | CTAG | 1 cut(s) | 146 |
| ZraI | GACGTC | 1 cut(s) | 466 |