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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 544 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 36, 339 |
| AccBSI | CCGCTC | 1 cut(s) | 49 |
| AccII | CGCG | 4 cut(s) | 12, 164, 536, 538 |
| AclWI | GGATC | 3 cut(s) | 48, 105, 124 |
| AcoI | YGGCCR | 1 cut(s) | 108 |
| AcuI | CTGAAG | 1 cut(s) | 113 |
| AcyI | GRCGYC | 1 cut(s) | 350 |
| AfaI | GTAC | 1 cut(s) | 260 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 36, 94, 139, 339, 395, 460 |
| AgsI | TTSAA | 2 cut(s) | 137, 244 |
| AjiI | CACGTC | 1 cut(s) | 61 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 86, 118 |
| AleI | CACNNNNGTG | 2 cut(s) | 230, 550 |
| AluBI | AGCT | 3 cut(s) | 70, 196, 416 |
| AluI | AGCT | 3 cut(s) | 70, 196, 416 |
| Alw26I | GTCTC | 1 cut(s) | 67 |
| AlwI | GGATC | 3 cut(s) | 48, 105, 124 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 416 |
| AoxI | GGCC | 3 cut(s) | 108, 222, 328 |
| ApeKI | GCWGC | 4 cut(s) | 236, 281, 296, 299 |
| AspLEI | GCGC | 1 cut(s) | 538 |
| AspS9I | GGNCC | 1 cut(s) | 329 |
| AsuHPI | GGTGA | 3 cut(s) | 19, 355, 461 |
| BanI | GGYRCC | 1 cut(s) | 544 |
| BbvCI | CCTCAGC | 1 cut(s) | 417 |
| BbvI | GCAGC | 4 cut(s) | 248, 268, 283, 286 |
| BccI | CCATC | 2 cut(s) | 196, 535 |
| BceAI | ACGGC | 1 cut(s) | 454 |
| BcoDI | GTCTC | 1 cut(s) | 67 |
| BfmI | CTRYAG | 1 cut(s) | 408 |
| BisI | GCNGC | 7 cut(s) | 13, 108, 150, 237, 282, 297, 300 |
| BlsI | GCNGC | 7 cut(s) | 14, 109, 151, 238, 283, 298, 301 |
| BmgBI | CACGTC | 1 cut(s) | 61 |
| BmgT120I | GGNCC | 1 cut(s) | 329 |
| BmiI | GGNNCC | 3 cut(s) | 331, 405, 546 |
| BmrI | ACTGGG | 1 cut(s) | 349 |
| BmuI | ACTGGG | 1 cut(s) | 349 |
| BpmI | CTGGAG | 3 cut(s) | 92, 197, 218 |
| Bpu10I | CCTNAGC | 2 cut(s) | 417, 430 |
| BpuEI | CTTGAG | 1 cut(s) | 65 |
| BsaHI | GRCGYC | 1 cut(s) | 350 |
| BsaJI | CCNNGG | 4 cut(s) | 10, 111, 162, 548 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 47, 77 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 36, 94, 139, 339, 395, 460 |
| Bse1I | ACTGG | 1 cut(s) | 344 |
| BseDI | CCNNGG | 4 cut(s) | 10, 111, 162, 548 |
| BseGI | GGATG | 4 cut(s) | 10, 28, 469, 546 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 36, 94, 139, 339, 395, 460 |
| BseMII | CTCAG | 3 cut(s) | 246, 408, 444 |
| BseNI | ACTGG | 1 cut(s) | 344 |
| BseXI | GCAGC | 4 cut(s) | 248, 268, 283, 286 |
| BseYI | CCCAGC | 2 cut(s) | 66, 457 |
| BsgI | GTGCAG | 1 cut(s) | 531 |
| Bsh1236I | CGCG | 4 cut(s) | 12, 164, 536, 538 |
| BshFI | GGCC | 3 cut(s) | 110, 224, 330 |
| BshNI | GGYRCC | 1 cut(s) | 544 |
| BslFI | GGGAC | 1 cut(s) | 337 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 36, 94, 139, 339, 395, 460 |
| BsmAI | GTCTC | 1 cut(s) | 67 |
| BsmBI | CGTCTC | 1 cut(s) | 67 |
| BsmFI | GGGAC | 1 cut(s) | 337 |
| BsnI | GGCC | 3 cut(s) | 110, 224, 330 |
| Bsp143I | GATC | 4 cut(s) | 40, 97, 129, 356 |
| Bsp19I | CCATGG | 1 cut(s) | 548 |
| BspANI | GGCC | 3 cut(s) | 110, 224, 330 |
| BspCNI | CTCAG | 3 cut(s) | 247, 409, 443 |
| BspFNI | CGCG | 4 cut(s) | 12, 164, 536, 538 |
| BspLI | GGNNCC | 3 cut(s) | 331, 405, 546 |
| BspPI | GGATC | 3 cut(s) | 48, 105, 124 |
| BspT107I | GGYRCC | 1 cut(s) | 544 |
| BsrBI | CCGCTC | 1 cut(s) | 49 |
| BsrI | ACTGG | 1 cut(s) | 344 |
| BssECI | CCNNGG | 4 cut(s) | 10, 111, 162, 548 |
| BssMI | GATC | 4 cut(s) | 40, 97, 129, 356 |
| BssNI | GRCGYC | 1 cut(s) | 350 |
| BssT1I | CCWWGG | 2 cut(s) | 111, 548 |
| BstACI | GRCGYC | 1 cut(s) | 350 |
| BstC8I | GCNNGC | 3 cut(s) | 10, 267, 525 |
| BstDEI | CTNAG | 4 cut(s) | 153, 255, 417, 430 |
| BstDSI | CCRYGG | 3 cut(s) | 10, 162, 548 |
| BstEII | GGTNACC | 1 cut(s) | 449 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 92 |
| BstF5I | GGATG | 4 cut(s) | 10, 28, 469, 546 |
| BstFNI | CGCG | 4 cut(s) | 12, 164, 536, 538 |
| BstHHI | GCGC | 1 cut(s) | 538 |
| BstKTI | GATC | 4 cut(s) | 43, 100, 132, 359 |
| BstMAI | GTCTC | 1 cut(s) | 67 |
| BstMBI | GATC | 4 cut(s) | 40, 97, 129, 356 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 287, 296, 533, 542 |
| BstNSI | RCATGY | 1 cut(s) | 316 |
| BstPI | GGTNACC | 1 cut(s) | 449 |
| BstSFI | CTRYAG | 1 cut(s) | 408 |
| BstUI | CGCG | 4 cut(s) | 12, 164, 536, 538 |
| BstV1I | GCAGC | 4 cut(s) | 248, 268, 283, 286 |
| BstX2I | RGATCY | 2 cut(s) | 40, 129 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 232 |
| BstYI | RGATCY | 2 cut(s) | 40, 129 |
| BsuRI | GGCC | 3 cut(s) | 110, 224, 330 |
| BtgI | CCRYGG | 3 cut(s) | 10, 162, 548 |
| BtgZI | GCGATG | 1 cut(s) | 284 |
| BtrI | CACGTC | 1 cut(s) | 61 |
| BtsCI | GGATG | 4 cut(s) | 10, 28, 469, 546 |
| Cac8I | GCNNGC | 3 cut(s) | 10, 267, 525 |
| CaiI | CAGNNNCTG | 1 cut(s) | 416 |
| CfoI | GCGC | 1 cut(s) | 538 |
| Cfr13I | GGNCC | 1 cut(s) | 329 |
| Cfr42I | CCGCGG | 2 cut(s) | 13, 165 |
| CseI | GACGC | 1 cut(s) | 339 |
| Csp6I | GTAC | 1 cut(s) | 259 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 381, 416 |
| CviAII | CATG | 2 cut(s) | 313, 549 |
| CviQI | GTAC | 1 cut(s) | 259 |
| DdeI | CTNAG | 4 cut(s) | 153, 255, 417, 430 |
| DpnI | GATC | 4 cut(s) | 42, 99, 131, 358 |
| DpnII | GATC | 4 cut(s) | 40, 97, 129, 356 |
| EaeI | YGGCCR | 1 cut(s) | 108 |
| Eco130I | CCWWGG | 2 cut(s) | 111, 548 |
| Eco57I | CTGAAG | 1 cut(s) | 113 |
| Eco91I | GGTNACC | 1 cut(s) | 449 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 92 |
| EcoO109I | RGGNCCY | 1 cut(s) | 329 |
| EcoO65I | GGTNACC | 1 cut(s) | 449 |
| EcoT14I | CCWWGG | 2 cut(s) | 111, 548 |
| ErhI | CCWWGG | 2 cut(s) | 111, 548 |
| Esp3I | CGTCTC | 1 cut(s) | 67 |
| FaeI | CATG | 2 cut(s) | 316, 552 |
| FaiI | YATR | 5 cut(s) | 83, 216, 314, 521, 550 |
| FaqI | GGGAC | 1 cut(s) | 337 |
| FatI | CATG | 2 cut(s) | 312, 548 |
| FauI | CCCGC | 1 cut(s) | 17 |
| Fnu4HI | GCNGC | 7 cut(s) | 13, 108, 150, 237, 282, 297, 300 |
| FokI | GGATG | 3 cut(s) | 17, 35, 476 |
| Fsp4HI | GCNGC | 7 cut(s) | 13, 108, 150, 237, 282, 297, 300 |
| GlaI | GCGC | 1 cut(s) | 537 |
| GluI | GCNGC | 7 cut(s) | 13, 108, 150, 237, 282, 297, 300 |
| GsaI | CCCAGC | 2 cut(s) | 70, 461 |
| GsuI | CTGGAG | 3 cut(s) | 92, 197, 218 |
| HaeIII | GGCC | 3 cut(s) | 110, 224, 330 |
| HgaI | GACGC | 1 cut(s) | 339 |
| HhaI | GCGC | 1 cut(s) | 538 |
| Hin1I | GRCGYC | 1 cut(s) | 350 |
| Hin1II | CATG | 2 cut(s) | 316, 552 |
| Hin6I | GCGC | 1 cut(s) | 536 |
| HinP1I | GCGC | 1 cut(s) | 536 |
| HinfI | GANTC | 3 cut(s) | 211, 365, 478 |
| HphI | GGTGA | 3 cut(s) | 19, 355, 461 |
| Hpy166II | GTNNAC | 1 cut(s) | 159 |
| Hpy188I | TCNGA | 1 cut(s) | 499 |
| Hpy188III | TCNNGA | 2 cut(s) | 44, 354 |
| Hpy8I | GTNNAC | 1 cut(s) | 159 |
| HpyAV | CCTTC | 2 cut(s) | 88, 340 |
| HpyCH4IV | ACGT | 1 cut(s) | 60 |
| HpyCH4V | TGCA | 2 cut(s) | 284, 512 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 287, 296, 533, 542 |
| HpyF3I | CTNAG | 4 cut(s) | 153, 255, 417, 430 |
| HpySE526I | ACGT | 1 cut(s) | 60 |
| Hsp92I | GRCGYC | 1 cut(s) | 350 |
| Hsp92II | CATG | 2 cut(s) | 316, 552 |
| HspAI | GCGC | 1 cut(s) | 536 |
| KspI | CCGCGG | 2 cut(s) | 13, 165 |
| Kzo9I | GATC | 4 cut(s) | 40, 97, 129, 356 |
| LmnI | GCTCC | 1 cut(s) | 73 |
| Lsp1109I | GCAGC | 4 cut(s) | 248, 268, 283, 286 |
| MaeII | ACGT | 1 cut(s) | 60 |
| MaeIII | GTNAC | 3 cut(s) | 25, 434, 449 |
| MalI | GATC | 4 cut(s) | 42, 99, 131, 358 |
| MbiI | CCGCTC | 1 cut(s) | 49 |
| MboI | GATC | 4 cut(s) | 40, 97, 129, 356 |
| MfeI | CAATTG | 1 cut(s) | 101 |
| MflI | RGATCY | 2 cut(s) | 40, 129 |
| MluCI | AATT | 2 cut(s) | 101, 304 |
| MlyI | GAGTC | 1 cut(s) | 374 |
| MmeI | TCCRAC | 1 cut(s) | 512 |
| MnlI | CCTC | 8 cut(s) | 165, 172, 214, 271, 372, 412, 436, 495 |
| MseI | TTAA | 1 cut(s) | 117 |
| MslI | CAYNNNNRTG | 2 cut(s) | 230, 550 |
| MspA1I | CMGCKG | 5 cut(s) | 12, 70, 164, 461, 475 |
| MunI | CAATTG | 1 cut(s) | 101 |
| MvnI | CGCG | 4 cut(s) | 12, 164, 536, 538 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 287, 296, 533, 542 |
| NcoI | CCATGG | 1 cut(s) | 548 |
| NdeII | GATC | 4 cut(s) | 40, 97, 129, 356 |
| NlaIII | CATG | 2 cut(s) | 316, 552 |
| NlaIV | GGNNCC | 3 cut(s) | 331, 405, 546 |
| NmeAIII | GCCGAG | 1 cut(s) | 388 |
| NmuCI | GTSAC | 2 cut(s) | 25, 449 |
| NspI | RCATGY | 1 cut(s) | 316 |
| OliI | CACNNNNGTG | 2 cut(s) | 230, 550 |
| PfeI | GAWTC | 2 cut(s) | 211, 478 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 36, 339 |
| PkrI | GCNGC | 7 cut(s) | 14, 109, 151, 238, 283, 298, 301 |
| PleI | GAGTC | 1 cut(s) | 373 |
| PpsI | GAGTC | 1 cut(s) | 373 |
| PspEI | GGTNACC | 1 cut(s) | 449 |
| PspFI | CCCAGC | 2 cut(s) | 66, 457 |
| PspN4I | GGNNCC | 3 cut(s) | 331, 405, 546 |
| PspPI | GGNCC | 1 cut(s) | 329 |
| PstNI | CAGNNNCTG | 1 cut(s) | 416 |
| PsuI | RGATCY | 2 cut(s) | 40, 129 |
| PvuII | CAGCTG | 1 cut(s) | 70 |
| RsaI | GTAC | 1 cut(s) | 260 |
| RsaNI | GTAC | 1 cut(s) | 259 |
| RseI | CAYNNNNRTG | 2 cut(s) | 230, 550 |
| SacII | CCGCGG | 2 cut(s) | 13, 165 |
| SaqAI | TTAA | 1 cut(s) | 117 |
| SatI | GCNGC | 7 cut(s) | 13, 108, 150, 237, 282, 297, 300 |
| Sau3AI | GATC | 4 cut(s) | 40, 97, 129, 356 |
| Sau96I | GGNCC | 1 cut(s) | 329 |
| SchI | GAGTC | 1 cut(s) | 374 |
| SetI | ASST | 9 cut(s) | 63, 72, 82, 117, 189, 198, 418, 436, 487 |
| SfcI | CTRYAG | 1 cut(s) | 408 |
| Sfr303I | CCGCGG | 2 cut(s) | 13, 165 |
| SgrBI | CCGCGG | 2 cut(s) | 13, 165 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 230, 550 |
| SmlI | CTYRAG | 1 cut(s) | 44 |
| SmoI | CTYRAG | 1 cut(s) | 44 |
| Sse9I | AATT | 2 cut(s) | 101, 304 |
| StyI | CCWWGG | 2 cut(s) | 111, 548 |
| TaiI | ACGT | 1 cut(s) | 63 |
| TaqII | GACCGA | 1 cut(s) | 483 |
| TasI | AATT | 2 cut(s) | 101, 304 |
| TatI | WGTACW | 1 cut(s) | 258 |
| TauI | GCSGC | 3 cut(s) | 15, 110, 152 |
| TfiI | GAWTC | 2 cut(s) | 211, 478 |
| Tru1I | TTAA | 1 cut(s) | 117 |
| Tru9I | TTAA | 1 cut(s) | 117 |
| TseFI | GTSAC | 2 cut(s) | 25, 449 |
| TseI | GCWGC | 4 cut(s) | 236, 281, 296, 299 |
| Tsp45I | GTSAC | 2 cut(s) | 25, 449 |
| TspDTI | ATGAA | 2 cut(s) | 224, 480 |
| TspGWI | ACGGA | 1 cut(s) | 233 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 36, 339 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 92 |
| XceI | RCATGY | 1 cut(s) | 316 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 199 |