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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 146 |
| AarI | CACCTGC | 1 cut(s) | 645 |
| AbsI | CCTCGAGG | 1 cut(s) | 663 |
| Acc36I | ACCTGC | 1 cut(s) | 645 |
| AccB1I | GGYRCC | 2 cut(s) | 682, 1130 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 59 |
| AccBSI | CCGCTC | 7 cut(s) | 133, 332, 839, 888, 915, 1053, 1128 |
| AccI | GTMKAC | 2 cut(s) | 94, 476 |
| AccII | CGCG | 4 cut(s) | 158, 173, 267, 1169 |
| AclWI | GGATC | 2 cut(s) | 394, 1065 |
| AcsI | RAATTY | 1 cut(s) | 868 |
| AcuI | CTGAAG | 1 cut(s) | 28 |
| AcvI | CACGTG | 1 cut(s) | 860 |
| AcyI | GRCGYC | 2 cut(s) | 91, 1131 |
| AdeI | CACNNNGTG | 1 cut(s) | 59 |
| AfaI | GTAC | 3 cut(s) | 364, 457, 542 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 31, 59, 558, 773, 888, 1044, 1140 |
| AflIII | ACRYGT | 1 cut(s) | 859 |
| AgeI | ACCGGT | 1 cut(s) | 232 |
| AgsI | TTSAA | 3 cut(s) | 700, 868, 964 |
| AjnI | CCWGG | 1 cut(s) | 526 |
| AleI | CACNNNNGTG | 1 cut(s) | 908 |
| AluBI | AGCT | 5 cut(s) | 708, 980, 1059, 1176, 1226 |
| AluI | AGCT | 5 cut(s) | 708, 980, 1059, 1176, 1226 |
| Alw26I | GTCTC | 7 cut(s) | 26, 424, 737, 934, 1084, 1190, 1223 |
| AlwI | GGATC | 2 cut(s) | 394, 1065 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 411 |
| Ama87I | CYCGRG | 5 cut(s) | 553, 663, 883, 1043, 1200 |
| AoxI | GGCC | 5 cut(s) | 592, 667, 764, 791, 1100 |
| ApaI | GGGCCC | 1 cut(s) | 596 |
| ApeKI | GCWGC | 6 cut(s) | 523, 547, 676, 708, 1008, 1056 |
| ApoI | RAATTY | 1 cut(s) | 868 |
| AseI | ATTAAT | 1 cut(s) | 341 |
| AsiGI | ACCGGT | 1 cut(s) | 232 |
| AspLEI | GCGC | 4 cut(s) | 6, 269, 511, 1133 |
| AspS9I | GGNCC | 5 cut(s) | 35, 327, 592, 593, 764 |
| AsuC2I | CCSGG | 1 cut(s) | 287 |
| AsuHPI | GGTGA | 8 cut(s) | 222, 390, 429, 573, 669, 816, 962, 1017 |
| AvaI | CYCGRG | 5 cut(s) | 553, 663, 883, 1043, 1200 |
| AvaII | GGWCC | 2 cut(s) | 35, 327 |
| BaeGI | GKGCMC | 1 cut(s) | 596 |
| BanI | GGYRCC | 2 cut(s) | 682, 1130 |
| BanII | GRGCYC | 1 cut(s) | 596 |
| BauI | CACGAG | 1 cut(s) | 1012 |
| BbrPI | CACGTG | 1 cut(s) | 860 |
| BbsI | GAAGAC | 1 cut(s) | 217 |
| BbvCI | CCTCAGC | 1 cut(s) | 1060 |
| BbvI | GCAGC | 6 cut(s) | 510, 559, 663, 695, 995, 1068 |
| BccI | CCATC | 2 cut(s) | 400, 687 |
| BciT130I | CCWGG | 1 cut(s) | 528 |
| BcnI | CCSGG | 1 cut(s) | 287 |
| BcoDI | GTCTC | 7 cut(s) | 26, 424, 737, 934, 1084, 1190, 1223 |
| BfaI | CTAG | 4 cut(s) | 500, 844, 919, 1227 |
| BfoI | RGCGCY | 2 cut(s) | 7, 1134 |
| BfuAI | ACCTGC | 1 cut(s) | 645 |
| Bme1390I | CCNGG | 2 cut(s) | 287, 528 |
| Bme18I | GGWCC | 2 cut(s) | 35, 327 |
| BmeT110I | CYCGRG | 5 cut(s) | 553, 663, 883, 1043, 1200 |
| BmgT120I | GGNCC | 5 cut(s) | 35, 327, 592, 593, 764 |
| BmiI | GGNNCC | 8 cut(s) | 36, 594, 595, 626, 650, 684, 765, 1132 |
| BmrFI | CCNGG | 2 cut(s) | 287, 528 |
| BmsI | GCATC | 2 cut(s) | 440, 1152 |
| BoxI | GACNNNNGTC | 2 cut(s) | 221, 996 |
| BpiI | GAAGAC | 1 cut(s) | 217 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1183, 1215 |
| BpmI | CTGGAG | 2 cut(s) | 419, 1066 |
| Bpu10I | CCTNAGC | 2 cut(s) | 952, 1060 |
| BpuMI | CCSGG | 1 cut(s) | 287 |
| BsaAI | YACGTR | 1 cut(s) | 860 |
| BsaHI | GRCGYC | 2 cut(s) | 91, 1131 |
| BsaI | GGTCTC | 2 cut(s) | 934, 1084 |
| BsaJI | CCNNGG | 8 cut(s) | 25, 53, 323, 488, 527, 1042, 1074, 1139 |
| BsaWI | WCCGGW | 1 cut(s) | 232 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 346, 376, 1203 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 31, 59, 558, 773, 888, 1044, 1140 |
| Bse118I | RCCGGY | 3 cut(s) | 232, 414, 679 |
| Bse1I | ACTGG | 3 cut(s) | 423, 436, 510 |
| BseBI | CCWGG | 1 cut(s) | 528 |
| BseDI | CCNNGG | 8 cut(s) | 25, 53, 323, 488, 527, 1042, 1074, 1139 |
| BseGI | GGATG | 3 cut(s) | 942, 1125, 1167 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 31, 59, 558, 773, 888, 1044, 1140 |
| BseMII | CTCAG | 5 cut(s) | 347, 397, 483, 943, 1051 |
| BseNI | ACTGG | 3 cut(s) | 423, 436, 510 |
| BseRI | GAGGAG | 3 cut(s) | 751, 838, 1081 |
| BseSI | GKGCMC | 1 cut(s) | 596 |
| BseXI | GCAGC | 6 cut(s) | 510, 559, 663, 695, 995, 1068 |
| BseYI | CCCAGC | 2 cut(s) | 370, 1092 |
| BsgI | GTGCAG | 1 cut(s) | 994 |
| Bsh1236I | CGCG | 4 cut(s) | 158, 173, 267, 1169 |
| BshFI | GGCC | 5 cut(s) | 594, 669, 766, 793, 1102 |
| BshNI | GGYRCC | 2 cut(s) | 682, 1130 |
| BshTI | ACCGGT | 1 cut(s) | 232 |
| BsiHKCI | CYCGRG | 5 cut(s) | 553, 663, 883, 1043, 1200 |
| BsiSI | CCGG | 4 cut(s) | 233, 286, 415, 680 |
| BslFI | GGGAC | 1 cut(s) | 48 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 31, 59, 558, 773, 888, 1044, 1140 |
| BsmAI | GTCTC | 7 cut(s) | 26, 424, 737, 934, 1084, 1190, 1223 |
| BsmBI | CGTCTC | 1 cut(s) | 737 |
| BsmFI | GGGAC | 1 cut(s) | 48 |
| BsnI | GGCC | 5 cut(s) | 594, 669, 766, 793, 1102 |
| Bso31I | GGTCTC | 2 cut(s) | 934, 1084 |
| BsoBI | CYCGRG | 5 cut(s) | 553, 663, 883, 1043, 1200 |
| Bsp120I | GGGCCC | 1 cut(s) | 592 |
| Bsp1286I | GDGCHC | 1 cut(s) | 596 |
| Bsp143I | GATC | 4 cut(s) | 252, 399, 755, 1070 |
| Bsp19I | CCATGG | 2 cut(s) | 323, 488 |
| Bsp68I | TCGCGA | 1 cut(s) | 1169 |
| BspANI | GGCC | 5 cut(s) | 594, 669, 766, 793, 1102 |
| BspCNI | CTCAG | 5 cut(s) | 346, 396, 482, 944, 1052 |
| BspFNI | CGCG | 4 cut(s) | 158, 173, 267, 1169 |
| BspLI | GGNNCC | 8 cut(s) | 36, 594, 595, 626, 650, 684, 765, 1132 |
| BspMI | ACCTGC | 1 cut(s) | 645 |
| BspPI | GGATC | 2 cut(s) | 394, 1065 |
| BspT107I | GGYRCC | 2 cut(s) | 682, 1130 |
| BspTNI | GGTCTC | 2 cut(s) | 934, 1084 |
| BsrBI | CCGCTC | 7 cut(s) | 133, 332, 839, 888, 915, 1053, 1128 |
| BsrFI | RCCGGY | 3 cut(s) | 232, 414, 679 |
| BsrI | ACTGG | 3 cut(s) | 423, 436, 510 |
| BssAI | RCCGGY | 3 cut(s) | 232, 414, 679 |
| BssECI | CCNNGG | 8 cut(s) | 25, 53, 323, 488, 527, 1042, 1074, 1139 |
| BssMI | GATC | 4 cut(s) | 252, 399, 755, 1070 |
| BssNI | GRCGYC | 2 cut(s) | 91, 1131 |
| BssSI | CACGAG | 1 cut(s) | 1012 |
| BssT1I | CCWWGG | 5 cut(s) | 25, 323, 488, 1074, 1139 |
| Bst2BI | CACGAG | 1 cut(s) | 1012 |
| Bst2UI | CCWGG | 1 cut(s) | 528 |
| Bst4CI | ACNGT | 8 cut(s) | 260, 481, 586, 636, 810, 945, 968, 1029 |
| Bst6I | CTCTTC | 3 cut(s) | 158, 728, 772 |
| BstACI | GRCGYC | 2 cut(s) | 91, 1131 |
| BstBAI | YACGTR | 1 cut(s) | 860 |
| BstC8I | GCNNGC | 7 cut(s) | 135, 139, 300, 578, 768, 772, 1167 |
| BstDEI | CTNAG | 5 cut(s) | 333, 383, 469, 952, 1060 |
| BstDSI | CCRYGG | 3 cut(s) | 53, 323, 488 |
| BstEII | GGTNACC | 1 cut(s) | 657 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1138 |
| BstF5I | GGATG | 3 cut(s) | 942, 1125, 1167 |
| BstFNI | CGCG | 4 cut(s) | 158, 173, 267, 1169 |
| BstH2I | RGCGCY | 2 cut(s) | 7, 1134 |
| BstHHI | GCGC | 4 cut(s) | 6, 269, 511, 1133 |
| BstKTI | GATC | 4 cut(s) | 255, 402, 758, 1073 |
| BstMAI | GTCTC | 7 cut(s) | 26, 424, 737, 934, 1084, 1190, 1223 |
| BstMBI | GATC | 4 cut(s) | 252, 399, 755, 1070 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 515, 682, 1162 |
| BstNI | CCWGG | 1 cut(s) | 528 |
| BstNSI | RCATGY | 1 cut(s) | 363 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 221, 996 |
| BstPI | GGTNACC | 1 cut(s) | 657 |
| BstSCI | CCNGG | 2 cut(s) | 285, 526 |
| BstSLI | GKGCMC | 1 cut(s) | 596 |
| BstUI | CGCG | 4 cut(s) | 158, 173, 267, 1169 |
| BstV1I | GCAGC | 6 cut(s) | 510, 559, 663, 695, 995, 1068 |
| BstV2I | GAAGAC | 1 cut(s) | 217 |
| BstX2I | RGATCY | 1 cut(s) | 1070 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 324, 693 |
| BstYI | RGATCY | 1 cut(s) | 1070 |
| BsuRI | GGCC | 5 cut(s) | 594, 669, 766, 793, 1102 |
| BtgI | CCRYGG | 3 cut(s) | 53, 323, 488 |
| BtsCI | GGATG | 3 cut(s) | 942, 1125, 1167 |
| BtsI | GCAGTG | 1 cut(s) | 409 |
| BtsIMutI | CAGTG | 2 cut(s) | 409, 443 |
| BtuMI | TCGCGA | 1 cut(s) | 1169 |
| BveI | ACCTGC | 1 cut(s) | 645 |
| Cac8I | GCNNGC | 7 cut(s) | 135, 139, 300, 578, 768, 772, 1167 |
| CaiI | CAGNNNCTG | 1 cut(s) | 411 |
| CfoI | GCGC | 4 cut(s) | 6, 269, 511, 1133 |
| Cfr10I | RCCGGY | 3 cut(s) | 232, 414, 679 |
| Cfr13I | GGNCC | 5 cut(s) | 35, 327, 592, 593, 764 |
| CseI | GACGC | 4 cut(s) | 80, 273, 757, 1162 |
| Csp6I | GTAC | 3 cut(s) | 363, 456, 541 |
| CspAI | ACCGGT | 1 cut(s) | 232 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 570, 605 |
| CviAII | CATG | 5 cut(s) | 18, 324, 360, 489, 1215 |
| CviQI | GTAC | 3 cut(s) | 363, 456, 541 |
| DdeI | CTNAG | 5 cut(s) | 333, 383, 469, 952, 1060 |
| DinI | GGCGCC | 1 cut(s) | 1132 |
| DpnI | GATC | 4 cut(s) | 254, 401, 757, 1072 |
| DpnII | GATC | 4 cut(s) | 252, 399, 755, 1070 |
| DraIII | CACNNNGTG | 1 cut(s) | 59 |
| Eam1104I | CTCTTC | 3 cut(s) | 158, 728, 772 |
| EarI | CTCTTC | 3 cut(s) | 158, 728, 772 |
| EciI | GGCGGA | 2 cut(s) | 272, 944 |
| Eco130I | CCWWGG | 5 cut(s) | 25, 323, 488, 1074, 1139 |
| Eco147I | AGGCCT | 2 cut(s) | 669, 793 |
| Eco24I | GRGCYC | 1 cut(s) | 596 |
| Eco31I | GGTCTC | 2 cut(s) | 934, 1084 |
| Eco47I | GGWCC | 2 cut(s) | 35, 327 |
| Eco57I | CTGAAG | 1 cut(s) | 28 |
| Eco72I | CACGTG | 1 cut(s) | 860 |
| Eco88I | CYCGRG | 5 cut(s) | 553, 663, 883, 1043, 1200 |
| Eco91I | GGTNACC | 1 cut(s) | 657 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1138 |
| EcoO109I | RGGNCCY | 3 cut(s) | 35, 593, 764 |
| EcoO65I | GGTNACC | 1 cut(s) | 657 |
| EcoRI | GAATTC | 1 cut(s) | 868 |
| EcoRII | CCWGG | 1 cut(s) | 526 |
| EcoT14I | CCWWGG | 5 cut(s) | 25, 323, 488, 1074, 1139 |
| EcoT38I | GRGCYC | 1 cut(s) | 596 |
| EgeI | GGCGCC | 1 cut(s) | 1132 |
| EheI | GGCGCC | 1 cut(s) | 1132 |
| ErhI | CCWWGG | 5 cut(s) | 25, 323, 488, 1074, 1139 |
| Esp3I | CGTCTC | 1 cut(s) | 737 |
| FaeI | CATG | 5 cut(s) | 21, 327, 363, 492, 1218 |
| FaiI | YATR | 8 cut(s) | 19, 146, 308, 325, 361, 490, 1159, 1216 |
| FaqI | GGGAC | 1 cut(s) | 48 |
| FatI | CATG | 5 cut(s) | 17, 323, 359, 488, 1214 |
| FauI | CCCGC | 5 cut(s) | 23, 126, 511, 824, 881 |
| FblI | GTMKAC | 2 cut(s) | 94, 476 |
| FokI | GGATG | 3 cut(s) | 949, 1132, 1174 |
| FriOI | GRGCYC | 1 cut(s) | 596 |
| FspBI | CTAG | 4 cut(s) | 500, 844, 919, 1227 |
| GlaI | GCGC | 4 cut(s) | 5, 268, 510, 1132 |
| GsaI | CCCAGC | 2 cut(s) | 374, 1096 |
| GsuI | CTGGAG | 2 cut(s) | 419, 1066 |
| HaeII | RGCGCY | 2 cut(s) | 7, 1134 |
| HaeIII | GGCC | 5 cut(s) | 594, 669, 766, 793, 1102 |
| HapII | CCGG | 4 cut(s) | 233, 286, 415, 680 |
| HgaI | GACGC | 4 cut(s) | 80, 273, 757, 1162 |
| HhaI | GCGC | 4 cut(s) | 6, 269, 511, 1133 |
| Hin1I | GRCGYC | 2 cut(s) | 91, 1131 |
| Hin1II | CATG | 5 cut(s) | 21, 327, 363, 492, 1218 |
| Hin6I | GCGC | 4 cut(s) | 4, 267, 509, 1131 |
| HinP1I | GCGC | 4 cut(s) | 4, 267, 509, 1131 |
| HincII | GTYRAC | 2 cut(s) | 95, 263 |
| HindII | GTYRAC | 2 cut(s) | 95, 263 |
| HinfI | GANTC | 7 cut(s) | 13, 201, 277, 381, 432, 847, 1198 |
| HpaII | CCGG | 4 cut(s) | 233, 286, 415, 680 |
| HphI | GGTGA | 8 cut(s) | 222, 390, 429, 573, 669, 816, 962, 1017 |
| Hpy166II | GTNNAC | 3 cut(s) | 95, 263, 477 |
| Hpy188I | TCNGA | 4 cut(s) | 114, 130, 336, 429 |
| Hpy188III | TCNNGA | 6 cut(s) | 102, 844, 873, 1083, 1168, 1202 |
| Hpy8I | GTNNAC | 3 cut(s) | 95, 263, 477 |
| Hpy99I | CGWCG | 5 cut(s) | 96, 590, 751, 1006, 1156 |
| HpyAV | CCTTC | 8 cut(s) | 3, 48, 229, 552, 594, 615, 795, 1092 |
| HpyCH4III | ACNGT | 8 cut(s) | 260, 481, 586, 636, 810, 945, 968, 1029 |
| HpyCH4IV | ACGT | 1 cut(s) | 859 |
| HpyCH4V | TGCA | 1 cut(s) | 1011 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 515, 682, 1162 |
| HpyF3I | CTNAG | 5 cut(s) | 333, 383, 469, 952, 1060 |
| HpySE526I | ACGT | 1 cut(s) | 859 |
| Hsp92I | GRCGYC | 2 cut(s) | 91, 1131 |
| Hsp92II | CATG | 5 cut(s) | 21, 327, 363, 492, 1218 |
| HspAI | GCGC | 4 cut(s) | 4, 267, 509, 1131 |
| KasI | GGCGCC | 1 cut(s) | 1130 |
| Kzo9I | GATC | 4 cut(s) | 252, 399, 755, 1070 |
| LmnI | GCTCC | 2 cut(s) | 533, 648 |
| Lsp1109I | GCAGC | 6 cut(s) | 510, 559, 663, 695, 995, 1068 |
| LweI | GCATC | 2 cut(s) | 440, 1152 |
| MaeI | CTAG | 4 cut(s) | 500, 844, 919, 1227 |
| MaeII | ACGT | 1 cut(s) | 859 |
| MaeIII | GTNAC | 6 cut(s) | 378, 630, 657, 804, 968, 1029 |
| MalI | GATC | 4 cut(s) | 254, 401, 757, 1072 |
| MbiI | CCGCTC | 7 cut(s) | 133, 332, 839, 888, 915, 1053, 1128 |
| MboI | GATC | 4 cut(s) | 252, 399, 755, 1070 |
| MboII | GAAGA | 5 cut(s) | 175, 217, 742, 745, 789 |
| MflI | RGATCY | 1 cut(s) | 1070 |
| MhlI | GDGCHC | 1 cut(s) | 596 |
| MluCI | AATT | 2 cut(s) | 345, 868 |
| Mly113I | GGCGCC | 1 cut(s) | 1131 |
| MlyI | GAGTC | 3 cut(s) | 375, 426, 1192 |
| MmeI | TCCRAC | 3 cut(s) | 92, 144, 626 |
| MseI | TTAA | 2 cut(s) | 107, 341 |
| MslI | CAYNNNNRTG | 2 cut(s) | 691, 908 |
| MspA1I | CMGCKG | 3 cut(s) | 370, 774, 1059 |
| MspI | CCGG | 4 cut(s) | 233, 286, 415, 680 |
| MspR9I | CCNGG | 2 cut(s) | 287, 528 |
| MvaI | CCWGG | 1 cut(s) | 528 |
| MvnI | CGCG | 4 cut(s) | 158, 173, 267, 1169 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 515, 682, 1162 |
| NarI | GGCGCC | 1 cut(s) | 1131 |
| NciI | CCSGG | 1 cut(s) | 287 |
| NcoI | CCATGG | 2 cut(s) | 323, 488 |
| NdeII | GATC | 4 cut(s) | 252, 399, 755, 1070 |
| NlaIII | CATG | 5 cut(s) | 21, 327, 363, 492, 1218 |
| NlaIV | GGNNCC | 8 cut(s) | 36, 594, 595, 626, 650, 684, 765, 1132 |
| NmeAIII | GCCGAG | 1 cut(s) | 961 |
| NmuCI | GTSAC | 5 cut(s) | 378, 657, 804, 968, 1029 |
| NruI | TCGCGA | 1 cut(s) | 1169 |
| NspI | RCATGY | 1 cut(s) | 363 |
| OliI | CACNNNNGTG | 1 cut(s) | 908 |
| PaeR7I | CTCGAG | 2 cut(s) | 663, 1200 |
| PaqCI | CACCTGC | 1 cut(s) | 645 |
| PceI | AGGCCT | 2 cut(s) | 669, 793 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1010, 1207 |
| PfeI | GAWTC | 4 cut(s) | 13, 201, 277, 847 |
| PflFI | GACNNNGTC | 1 cut(s) | 1215 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 59 |
| PinAI | ACCGGT | 1 cut(s) | 232 |
| PleI | GAGTC | 3 cut(s) | 375, 426, 1192 |
| PluTI | GGCGCC | 1 cut(s) | 1134 |
| PmaCI | CACGTG | 1 cut(s) | 860 |
| PmlI | CACGTG | 1 cut(s) | 860 |
| PpsI | GAGTC | 3 cut(s) | 375, 426, 1192 |
| Ppu21I | YACGTR | 1 cut(s) | 860 |
| PpuMI | RGGWCCY | 1 cut(s) | 35 |
| PshAI | GACNNNNGTC | 2 cut(s) | 221, 996 |
| PshBI | ATTAAT | 1 cut(s) | 341 |
| PsiI | TTATAA | 1 cut(s) | 146 |
| Psp5II | RGGWCCY | 1 cut(s) | 35 |
| Psp6I | CCWGG | 1 cut(s) | 526 |
| PspCI | CACGTG | 1 cut(s) | 860 |
| PspEI | GGTNACC | 1 cut(s) | 657 |
| PspFI | CCCAGC | 2 cut(s) | 370, 1092 |
| PspGI | CCWGG | 1 cut(s) | 526 |
| PspN4I | GGNNCC | 8 cut(s) | 36, 594, 595, 626, 650, 684, 765, 1132 |
| PspOMI | GGGCCC | 1 cut(s) | 592 |
| PspPI | GGNCC | 5 cut(s) | 35, 327, 592, 593, 764 |
| PspPPI | RGGWCCY | 1 cut(s) | 35 |
| PspXI | VCTCGAGB | 1 cut(s) | 663 |
| PstNI | CAGNNNCTG | 1 cut(s) | 411 |
| PsuI | RGATCY | 1 cut(s) | 1070 |
| PsyI | GACNNNGTC | 1 cut(s) | 1215 |
| PvuII | CAGCTG | 1 cut(s) | 1059 |
| RruI | TCGCGA | 1 cut(s) | 1169 |
| RsaI | GTAC | 3 cut(s) | 364, 457, 542 |
| RsaNI | GTAC | 3 cut(s) | 363, 456, 541 |
| RseI | CAYNNNNRTG | 2 cut(s) | 691, 908 |
| SalI | GTCGAC | 1 cut(s) | 93 |
| SaqAI | TTAA | 2 cut(s) | 107, 341 |
| Sau3AI | GATC | 4 cut(s) | 252, 399, 755, 1070 |
| Sau96I | GGNCC | 5 cut(s) | 35, 327, 592, 593, 764 |
| SchI | GAGTC | 3 cut(s) | 375, 426, 1192 |
| ScrFI | CCNGG | 2 cut(s) | 287, 528 |
| SduI | GDGCHC | 1 cut(s) | 596 |
| SfaNI | GCATC | 2 cut(s) | 440, 1152 |
| SfoI | GGCGCC | 1 cut(s) | 1132 |
| Sfr274I | CTCGAG | 2 cut(s) | 663, 1200 |
| SinI | GGWCC | 2 cut(s) | 35, 327 |
| SlaI | CTCGAG | 2 cut(s) | 663, 1200 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 691, 908 |
| SmlI | CTYRAG | 2 cut(s) | 663, 1200 |
| SmoI | CTYRAG | 2 cut(s) | 663, 1200 |
| Sse9I | AATT | 2 cut(s) | 345, 868 |
| SseBI | AGGCCT | 2 cut(s) | 669, 793 |
| SspDI | GGCGCC | 1 cut(s) | 1130 |
| SspMI | CTAG | 4 cut(s) | 500, 844, 919, 1227 |
| StuI | AGGCCT | 2 cut(s) | 669, 793 |
| StyD4I | CCNGG | 2 cut(s) | 285, 526 |
| StyI | CCWWGG | 5 cut(s) | 25, 323, 488, 1074, 1139 |
| TaaI | ACNGT | 8 cut(s) | 260, 481, 586, 636, 810, 945, 968, 1029 |
| TaiI | ACGT | 1 cut(s) | 862 |
| TaqI | TCGA | 7 cut(s) | 79, 94, 251, 448, 664, 821, 1201 |
| TasI | AATT | 2 cut(s) | 345, 868 |
| TauI | GCSGC | 5 cut(s) | 370, 654, 918, 1056, 1131 |
| TfiI | GAWTC | 4 cut(s) | 13, 201, 277, 847 |
| Tru1I | TTAA | 2 cut(s) | 107, 341 |
| Tru9I | TTAA | 2 cut(s) | 107, 341 |
| TscAI | CASTG | 2 cut(s) | 416, 443 |
| TseFI | GTSAC | 5 cut(s) | 378, 657, 804, 968, 1029 |
| TseI | GCWGC | 6 cut(s) | 523, 547, 676, 708, 1008, 1056 |
| Tsp45I | GTSAC | 5 cut(s) | 378, 657, 804, 968, 1029 |
| TspDTI | ATGAA | 1 cut(s) | 743 |
| TspGWI | ACGGA | 1 cut(s) | 990 |
| TspRI | CASTG | 2 cut(s) | 416, 443 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1215 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 59 |
| VpaK11BI | GGWCC | 2 cut(s) | 35, 327 |
| VspI | ATTAAT | 1 cut(s) | 341 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1138 |
| XapI | RAATTY | 1 cut(s) | 868 |
| XbaI | TCTAGA | 1 cut(s) | 843 |
| XceI | RCATGY | 1 cut(s) | 363 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1110 |
| XhoI | CTCGAG | 2 cut(s) | 663, 1200 |
| XmiI | GTMKAC | 2 cut(s) | 94, 476 |
| XspI | CTAG | 4 cut(s) | 500, 844, 919, 1227 |