Encoded by
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 12 |
| AccB1I | GGYRCC | 2 cut(s) | 463, 1132 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 159, 528 |
| AccBSI | CCGCTC | 2 cut(s) | 1492, 1630 |
| AccII | CGCG | 6 cut(s) | 187, 876, 939, 1118, 1138, 1167 |
| AccIII | TCCGGA | 1 cut(s) | 38 |
| AclWI | GGATC | 4 cut(s) | 49, 472, 1034, 1047 |
| AcoI | YGGCCR | 2 cut(s) | 3, 1155 |
| AcsI | RAATTY | 1 cut(s) | 73 |
| AcuI | CTGAAG | 5 cut(s) | 66, 458, 719, 1259, 1537 |
| AcyI | GRCGYC | 2 cut(s) | 9, 1133 |
| AfaI | GTAC | 5 cut(s) | 600, 623, 716, 758, 839 |
| AflII | CTTAAG | 1 cut(s) | 329 |
| AflIII | ACRYGT | 2 cut(s) | 525, 874 |
| AgsI | TTSAA | 1 cut(s) | 1242 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 709 |
| AjiI | CACGTC | 1 cut(s) | 1573 |
| AjnI | CCWGG | 4 cut(s) | 480, 892, 1599, 1680 |
| AleI | CACNNNNGTG | 2 cut(s) | 1077, 1268 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1455, 1487 |
| AluBI | AGCT | 4 cut(s) | 364, 685, 1090, 1636 |
| AluI | AGCT | 4 cut(s) | 364, 685, 1090, 1636 |
| Alw21I | GWGCWC | 4 cut(s) | 184, 426, 1191, 1638 |
| Alw26I | GTCTC | 3 cut(s) | 878, 1121, 1659 |
| Alw44I | GTGCAC | 3 cut(s) | 180, 422, 1187 |
| AlwI | GGATC | 4 cut(s) | 49, 472, 1034, 1047 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 481 |
| Ama87I | CYCGRG | 1 cut(s) | 1010 |
| Aor13HI | TCCGGA | 1 cut(s) | 38 |
| AoxI | GGCC | 9 cut(s) | 3, 213, 409, 963, 1155, 1244, 1338, 1654, 1677 |
| ApaI | GGGCCC | 1 cut(s) | 1342 |
| ApaLI | GTGCAC | 3 cut(s) | 180, 422, 1187 |
| ApeKI | GCWGC | 8 cut(s) | 221, 364, 538, 832, 1051, 1090, 1348, 1604 |
| ApoI | RAATTY | 1 cut(s) | 73 |
| AspLEI | GCGC | 6 cut(s) | 278, 547, 1024, 1118, 1135, 1167 |
| AsuC2I | CCSGG | 3 cut(s) | 351, 828, 979 |
| AsuHPI | GGTGA | 8 cut(s) | 370, 953, 1064, 1094, 1132, 1198, 1472, 1472 |
| AvaI | CYCGRG | 1 cut(s) | 1010 |
| AvaII | GGWCC | 5 cut(s) | 768, 824, 934, 1006, 1110 |
| AxyI | CCTNAGG | 1 cut(s) | 1377 |
| BaeGI | GKGCMC | 7 cut(s) | 184, 426, 468, 681, 1191, 1342, 1572 |
| BamHI | GGATCC | 1 cut(s) | 1039 |
| BanI | GGYRCC | 2 cut(s) | 463, 1132 |
| BanII | GRGCYC | 4 cut(s) | 786, 1031, 1342, 1638 |
| BauI | CACGAG | 1 cut(s) | 425 |
| Bbv12I | GWGCWC | 4 cut(s) | 184, 426, 1191, 1638 |
| BbvI | GCAGC | 8 cut(s) | 208, 351, 525, 819, 1038, 1077, 1360, 1591 |
| BccI | CCATC | 1 cut(s) | 824 |
| BceAI | ACGGC | 9 cut(s) | 302, 404, 849, 1014, 1142, 1146, 1235, 1307, 1575 |
| BciT130I | CCWGG | 4 cut(s) | 482, 894, 1601, 1682 |
| BclI | TGATCA | 1 cut(s) | 687 |
| BcnI | CCSGG | 3 cut(s) | 351, 828, 979 |
| BcoDI | GTCTC | 3 cut(s) | 878, 1121, 1659 |
| BfaI | CTAG | 6 cut(s) | 122, 131, 201, 248, 959, 1302 |
| BfmI | CTRYAG | 3 cut(s) | 146, 1095, 1658 |
| BfoI | RGCGCY | 3 cut(s) | 548, 1025, 1136 |
| BfrI | CTTAAG | 1 cut(s) | 329 |
| BlpI | GCTNAGC | 1 cut(s) | 1025 |
| Bme1390I | CCNGG | 7 cut(s) | 351, 482, 828, 894, 979, 1601, 1682 |
| Bme18I | GGWCC | 5 cut(s) | 768, 824, 934, 1006, 1110 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 709 |
| BmeT110I | CYCGRG | 1 cut(s) | 1010 |
| BmgBI | CACGTC | 1 cut(s) | 1573 |
| BmrFI | CCNGG | 7 cut(s) | 351, 482, 828, 894, 979, 1601, 1682 |
| BmrI | ACTGGG | 1 cut(s) | 1344 |
| BmsI | GCATC | 1 cut(s) | 1309 |
| BmuI | ACTGGG | 1 cut(s) | 1344 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 377, 409 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1637 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1025 |
| BpuEI | CTTGAG | 1 cut(s) | 872 |
| BpuMI | CCSGG | 3 cut(s) | 351, 828, 979 |
| BsaAI | YACGTR | 1 cut(s) | 625 |
| BsaHI | GRCGYC | 2 cut(s) | 9, 1133 |
| BsaWI | WCCGGW | 2 cut(s) | 38, 342 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 773, 803 |
| Bse118I | RCCGGY | 4 cut(s) | 324, 403, 1112, 1153 |
| Bse1I | ACTGG | 4 cut(s) | 267, 621, 722, 1339 |
| Bse21I | CCTNAGG | 1 cut(s) | 1377 |
| Bse3DI | GCAATG | 2 cut(s) | 498, 936 |
| BseAI | TCCGGA | 1 cut(s) | 38 |
| BseBI | CCWGG | 4 cut(s) | 482, 894, 1601, 1682 |
| BseGI | GGATG | 3 cut(s) | 309, 816, 1324 |
| BseMI | GCAATG | 2 cut(s) | 498, 936 |
| BseMII | CTCAG | 4 cut(s) | 673, 1016, 1368, 1651 |
| BseNI | ACTGG | 4 cut(s) | 267, 621, 722, 1339 |
| BseRI | GAGGAG | 1 cut(s) | 398 |
| BseSI | GKGCMC | 7 cut(s) | 184, 426, 468, 681, 1191, 1342, 1572 |
| BseX3I | CGGCCG | 1 cut(s) | 1155 |
| BseXI | GCAGC | 8 cut(s) | 208, 351, 525, 819, 1038, 1077, 1360, 1591 |
| BseYI | CCCAGC | 2 cut(s) | 278, 1192 |
| BsgI | GTGCAG | 1 cut(s) | 126 |
| Bsh1236I | CGCG | 6 cut(s) | 187, 876, 939, 1118, 1138, 1167 |
| Bsh1285I | CGRYCG | 2 cut(s) | 588, 1158 |
| BshFI | GGCC | 9 cut(s) | 5, 215, 411, 965, 1157, 1246, 1340, 1656, 1679 |
| BshNI | GGYRCC | 2 cut(s) | 463, 1132 |
| BsiEI | CGRYCG | 2 cut(s) | 588, 1158 |
| BsiHKAI | GWGCWC | 4 cut(s) | 184, 426, 1191, 1638 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1010 |
| BsiSI | CCGG | 9 cut(s) | 39, 325, 343, 351, 404, 827, 978, 1113, 1154 |
| BslFI | GGGAC | 2 cut(s) | 1123, 1423 |
| BsmAI | GTCTC | 3 cut(s) | 878, 1121, 1659 |
| BsmBI | CGTCTC | 1 cut(s) | 1121 |
| BsmFI | GGGAC | 2 cut(s) | 1123, 1423 |
| BsnI | GGCC | 9 cut(s) | 5, 215, 411, 965, 1157, 1246, 1340, 1656, 1679 |
| BsoBI | CYCGRG | 1 cut(s) | 1010 |
| Bsp120I | GGGCCC | 1 cut(s) | 1338 |
| Bsp13I | TCCGGA | 1 cut(s) | 38 |
| Bsp143I | GATC | 5 cut(s) | 41, 477, 687, 1039, 1417 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1025 |
| BspANI | GGCC | 9 cut(s) | 5, 215, 411, 965, 1157, 1246, 1340, 1656, 1679 |
| BspCNI | CTCAG | 4 cut(s) | 672, 1017, 1369, 1650 |
| BspEI | TCCGGA | 1 cut(s) | 38 |
| BspFNI | CGCG | 6 cut(s) | 187, 876, 939, 1118, 1138, 1167 |
| BspPI | GGATC | 4 cut(s) | 49, 472, 1034, 1047 |
| BspT107I | GGYRCC | 2 cut(s) | 463, 1132 |
| BspTI | CTTAAG | 1 cut(s) | 329 |
| BsrBI | CCGCTC | 2 cut(s) | 1492, 1630 |
| BsrDI | GCAATG | 2 cut(s) | 498, 936 |
| BsrFI | RCCGGY | 4 cut(s) | 324, 403, 1112, 1153 |
| BsrI | ACTGG | 4 cut(s) | 267, 621, 722, 1339 |
| BssAI | RCCGGY | 4 cut(s) | 324, 403, 1112, 1153 |
| BssMI | GATC | 5 cut(s) | 41, 477, 687, 1039, 1417 |
| BssNI | GRCGYC | 2 cut(s) | 9, 1133 |
| BssSI | CACGAG | 1 cut(s) | 425 |
| BssT1I | CCWWGG | 2 cut(s) | 670, 1075 |
| Bst2BI | CACGAG | 1 cut(s) | 425 |
| Bst2UI | CCWGG | 4 cut(s) | 482, 894, 1601, 1682 |
| Bst4CI | ACNGT | 4 cut(s) | 379, 589, 1099, 1460 |
| Bst6I | CTCTTC | 2 cut(s) | 852, 1308 |
| BstACI | GRCGYC | 2 cut(s) | 9, 1133 |
| BstAFI | CTTAAG | 1 cut(s) | 329 |
| BstBAI | YACGTR | 1 cut(s) | 625 |
| BstDEI | CTNAG | 4 cut(s) | 659, 1025, 1377, 1637 |
| BstDSI | CCRYGG | 5 cut(s) | 158, 588, 937, 1136, 1323 |
| BstF5I | GGATG | 3 cut(s) | 309, 816, 1324 |
| BstFNI | CGCG | 6 cut(s) | 187, 876, 939, 1118, 1138, 1167 |
| BstH2I | RGCGCY | 3 cut(s) | 548, 1025, 1136 |
| BstHHI | GCGC | 6 cut(s) | 278, 547, 1024, 1118, 1135, 1167 |
| BstKTI | GATC | 5 cut(s) | 44, 480, 690, 1042, 1420 |
| BstMAI | GTCTC | 3 cut(s) | 878, 1121, 1659 |
| BstMBI | GATC | 5 cut(s) | 41, 477, 687, 1039, 1417 |
| BstMCI | CGRYCG | 2 cut(s) | 588, 1158 |
| BstNI | CCWGG | 4 cut(s) | 482, 894, 1601, 1682 |
| BstNSI | RCATGY | 1 cut(s) | 529 |
| BstSCI | CCNGG | 7 cut(s) | 349, 480, 826, 892, 977, 1599, 1680 |
| BstSFI | CTRYAG | 3 cut(s) | 146, 1095, 1658 |
| BstSLI | GKGCMC | 7 cut(s) | 184, 426, 468, 681, 1191, 1342, 1572 |
| BstUI | CGCG | 6 cut(s) | 187, 876, 939, 1118, 1138, 1167 |
| BstV1I | GCAGC | 8 cut(s) | 208, 351, 525, 819, 1038, 1077, 1360, 1591 |
| BstX2I | RGATCY | 3 cut(s) | 41, 477, 1039 |
| BstYI | RGATCY | 3 cut(s) | 41, 477, 1039 |
| BstZI | CGGCCG | 1 cut(s) | 1155 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1377 |
| BsuRI | GGCC | 9 cut(s) | 5, 215, 411, 965, 1157, 1246, 1340, 1656, 1679 |
| BtgI | CCRYGG | 5 cut(s) | 158, 588, 937, 1136, 1323 |
| BtrI | CACGTC | 1 cut(s) | 1573 |
| BtsCI | GGATG | 3 cut(s) | 309, 816, 1324 |
| BtsI | GCAGTG | 3 cut(s) | 34, 116, 1191 |
| BtsIMutI | CAGTG | 5 cut(s) | 34, 116, 274, 1191, 1386 |
| CaiI | CAGNNNCTG | 1 cut(s) | 481 |
| CfoI | GCGC | 6 cut(s) | 278, 547, 1024, 1118, 1135, 1167 |
| Cfr10I | RCCGGY | 4 cut(s) | 324, 403, 1112, 1153 |
| Cfr42I | CCGCGG | 2 cut(s) | 940, 1139 |
| CseI | GACGC | 6 cut(s) | 80, 176, 356, 923, 997, 1596 |
| Csp6I | GTAC | 5 cut(s) | 599, 622, 715, 757, 838 |
| CviAII | CATG | 4 cut(s) | 526, 911, 967, 1589 |
| CviQI | GTAC | 5 cut(s) | 599, 622, 715, 757, 838 |
| DdeI | CTNAG | 4 cut(s) | 659, 1025, 1377, 1637 |
| DinI | GGCGCC | 1 cut(s) | 1134 |
| DpnI | GATC | 5 cut(s) | 43, 479, 689, 1041, 1419 |
| DpnII | GATC | 5 cut(s) | 41, 477, 687, 1039, 1417 |
| DriI | GACNNNNNGTC | 1 cut(s) | 709 |
| EaeI | YGGCCR | 2 cut(s) | 3, 1155 |
| EagI | CGGCCG | 1 cut(s) | 1155 |
| Eam1104I | CTCTTC | 2 cut(s) | 852, 1308 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 709 |
| EarI | CTCTTC | 2 cut(s) | 852, 1308 |
| EciI | GGCGGA | 4 cut(s) | 80, 360, 608, 1362 |
| Ecl136II | GAGCTC | 1 cut(s) | 1636 |
| EclXI | CGGCCG | 1 cut(s) | 1155 |
| Eco130I | CCWWGG | 2 cut(s) | 670, 1075 |
| Eco24I | GRGCYC | 4 cut(s) | 786, 1031, 1342, 1638 |
| Eco47I | GGWCC | 5 cut(s) | 768, 824, 934, 1006, 1110 |
| Eco52I | CGGCCG | 1 cut(s) | 1155 |
| Eco53kI | GAGCTC | 1 cut(s) | 1636 |
| Eco57I | CTGAAG | 5 cut(s) | 66, 458, 719, 1259, 1537 |
| Eco81I | CCTNAGG | 1 cut(s) | 1377 |
| Eco88I | CYCGRG | 1 cut(s) | 1010 |
| EcoICRI | GAGCTC | 1 cut(s) | 1636 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1338 |
| EcoRII | CCWGG | 4 cut(s) | 480, 892, 1599, 1680 |
| EcoT14I | CCWWGG | 2 cut(s) | 670, 1075 |
| EcoT38I | GRGCYC | 4 cut(s) | 786, 1031, 1342, 1638 |
| EgeI | GGCGCC | 1 cut(s) | 1134 |
| EheI | GGCGCC | 1 cut(s) | 1134 |
| ErhI | CCWWGG | 2 cut(s) | 670, 1075 |
| Esp3I | CGTCTC | 1 cut(s) | 1121 |
| FaeI | CATG | 4 cut(s) | 529, 914, 970, 1592 |
| FaqI | GGGAC | 2 cut(s) | 1123, 1423 |
| FatI | CATG | 4 cut(s) | 525, 910, 966, 1588 |
| FbaI | TGATCA | 1 cut(s) | 687 |
| FokI | GGATG | 3 cut(s) | 316, 803, 1331 |
| FriOI | GRGCYC | 4 cut(s) | 786, 1031, 1342, 1638 |
| FspBI | CTAG | 6 cut(s) | 122, 131, 201, 248, 959, 1302 |
| GlaI | GCGC | 6 cut(s) | 277, 546, 1023, 1117, 1134, 1166 |
| GsaI | CCCAGC | 2 cut(s) | 282, 1196 |
| HaeII | RGCGCY | 3 cut(s) | 548, 1025, 1136 |
| HaeIII | GGCC | 9 cut(s) | 5, 215, 411, 965, 1157, 1246, 1340, 1656, 1679 |
| HapII | CCGG | 9 cut(s) | 39, 325, 343, 351, 404, 827, 978, 1113, 1154 |
| HgaI | GACGC | 6 cut(s) | 80, 176, 356, 923, 997, 1596 |
| HhaI | GCGC | 6 cut(s) | 278, 547, 1024, 1118, 1135, 1167 |
| Hin1I | GRCGYC | 2 cut(s) | 9, 1133 |
| Hin1II | CATG | 4 cut(s) | 529, 914, 970, 1592 |
| Hin6I | GCGC | 6 cut(s) | 276, 545, 1022, 1116, 1133, 1165 |
| HinP1I | GCGC | 6 cut(s) | 276, 545, 1022, 1116, 1133, 1165 |
| HincII | GTYRAC | 2 cut(s) | 322, 1540 |
| HindII | GTYRAC | 2 cut(s) | 322, 1540 |
| HinfI | GANTC | 6 cut(s) | 35, 83, 140, 704, 886, 1298 |
| HpaI | GTTAAC | 1 cut(s) | 1540 |
| HpaII | CCGG | 9 cut(s) | 39, 325, 343, 351, 404, 827, 978, 1113, 1154 |
| HphI | GGTGA | 8 cut(s) | 370, 953, 1064, 1094, 1132, 1198, 1472, 1472 |
| Hpy166II | GTNNAC | 9 cut(s) | 182, 322, 424, 622, 655, 1006, 1189, 1463, 1540 |
| Hpy188I | TCNGA | 6 cut(s) | 46, 477, 805, 821, 1452, 1527 |
| Hpy188III | TCNNGA | 8 cut(s) | 39, 191, 691, 851, 1421, 1511, 1611, 1639 |
| Hpy8I | GTNNAC | 9 cut(s) | 182, 322, 424, 622, 655, 1006, 1189, 1463, 1540 |
| Hpy99I | CGWCG | 6 cut(s) | 11, 669, 991, 1256, 1538, 1577 |
| HpyAV | CCTTC | 9 cut(s) | 463, 482, 694, 739, 1351, 1393, 1508, 1561, 1636 |
| HpyCH4III | ACNGT | 4 cut(s) | 379, 589, 1099, 1460 |
| HpyCH4IV | ACGT | 5 cut(s) | 9, 624, 788, 1536, 1572 |
| HpyCH4V | TGCA | 6 cut(s) | 107, 182, 235, 424, 1189, 1588 |
| HpyF3I | CTNAG | 4 cut(s) | 659, 1025, 1377, 1637 |
| HpySE526I | ACGT | 5 cut(s) | 9, 624, 788, 1536, 1572 |
| Hsp92I | GRCGYC | 2 cut(s) | 9, 1133 |
| Hsp92II | CATG | 4 cut(s) | 529, 914, 970, 1592 |
| HspAI | GCGC | 6 cut(s) | 276, 545, 1022, 1116, 1133, 1165 |
| KasI | GGCGCC | 1 cut(s) | 1132 |
| Kpn2I | TCCGGA | 1 cut(s) | 38 |
| KroI | GCCGGC | 1 cut(s) | 1153 |
| KroNI | GCCGGC | 1 cut(s) | 1155 |
| Ksp22I | TGATCA | 1 cut(s) | 687 |
| KspAI | GTTAAC | 1 cut(s) | 1540 |
| KspI | CCGCGG | 2 cut(s) | 940, 1139 |
| Kzo9I | GATC | 5 cut(s) | 41, 477, 687, 1039, 1417 |
| LmnI | GCTCC | 5 cut(s) | 781, 1222, 1375, 1387, 1633 |
| Lsp1109I | GCAGC | 8 cut(s) | 208, 351, 525, 819, 1038, 1077, 1360, 1591 |
| LweI | GCATC | 1 cut(s) | 1309 |
| MaeI | CTAG | 6 cut(s) | 122, 131, 201, 248, 959, 1302 |
| MaeII | ACGT | 5 cut(s) | 9, 624, 788, 1536, 1572 |
| MaeIII | GTNAC | 3 cut(s) | 448, 1082, 1204 |
| MalI | GATC | 5 cut(s) | 43, 479, 689, 1041, 1419 |
| MbiI | CCGCTC | 2 cut(s) | 1492, 1630 |
| MboI | GATC | 5 cut(s) | 41, 477, 687, 1039, 1417 |
| MboII | GAAGA | 8 cut(s) | 251, 430, 590, 869, 1189, 1322, 1325, 1366 |
| MflI | RGATCY | 3 cut(s) | 41, 477, 1039 |
| MluCI | AATT | 2 cut(s) | 73, 795 |
| MluI | ACGCGT | 1 cut(s) | 874 |
| Mly113I | GGCGCC | 1 cut(s) | 1133 |
| MlyI | GAGTC | 5 cut(s) | 77, 149, 698, 880, 1292 |
| MmeI | TCCRAC | 3 cut(s) | 783, 795, 1200 |
| MroI | TCCGGA | 1 cut(s) | 38 |
| MroNI | GCCGGC | 1 cut(s) | 1153 |
| MseI | TTAA | 3 cut(s) | 330, 798, 1539 |
| MslI | CAYNNNNRTG | 3 cut(s) | 170, 1077, 1268 |
| MspA1I | CMGCKG | 6 cut(s) | 221, 311, 460, 939, 1138, 1196 |
| MspCI | CTTAAG | 1 cut(s) | 329 |
| MspI | CCGG | 9 cut(s) | 39, 325, 343, 351, 404, 827, 978, 1113, 1154 |
| MspR9I | CCNGG | 7 cut(s) | 351, 482, 828, 894, 979, 1601, 1682 |
| MvaI | CCWGG | 4 cut(s) | 482, 894, 1601, 1682 |
| MvnI | CGCG | 6 cut(s) | 187, 876, 939, 1118, 1138, 1167 |
| NaeI | GCCGGC | 1 cut(s) | 1155 |
| NarI | GGCGCC | 1 cut(s) | 1133 |
| NciI | CCSGG | 3 cut(s) | 351, 828, 979 |
| NdeII | GATC | 5 cut(s) | 41, 477, 687, 1039, 1417 |
| NgoMIV | GCCGGC | 1 cut(s) | 1153 |
| NlaIII | CATG | 4 cut(s) | 529, 914, 970, 1592 |
| NmeAIII | GCCGAG | 1 cut(s) | 1468 |
| NmuCI | GTSAC | 3 cut(s) | 448, 1082, 1204 |
| NspI | RCATGY | 1 cut(s) | 529 |
| OliI | CACNNNNGTG | 2 cut(s) | 1077, 1268 |
| PciI | ACATGT | 1 cut(s) | 525 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 92, 184 |
| PdiI | GCCGGC | 1 cut(s) | 1155 |
| PfeI | GAWTC | 1 cut(s) | 35 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 159, 528 |
| PleI | GAGTC | 5 cut(s) | 77, 148, 698, 880, 1292 |
| PluTI | GGCGCC | 1 cut(s) | 1136 |
| PpsI | GAGTC | 5 cut(s) | 77, 148, 698, 880, 1292 |
| Ppu21I | YACGTR | 1 cut(s) | 625 |
| PscI | ACATGT | 1 cut(s) | 525 |
| Psp124BI | GAGCTC | 1 cut(s) | 1638 |
| Psp6I | CCWGG | 4 cut(s) | 480, 892, 1599, 1680 |
| PspFI | CCCAGC | 2 cut(s) | 278, 1192 |
| PspGI | CCWGG | 4 cut(s) | 480, 892, 1599, 1680 |
| PspOMI | GGGCCC | 1 cut(s) | 1338 |
| PstNI | CAGNNNCTG | 1 cut(s) | 481 |
| PsuI | RGATCY | 3 cut(s) | 41, 477, 1039 |
| RsaI | GTAC | 5 cut(s) | 600, 623, 716, 758, 839 |
| RsaNI | GTAC | 5 cut(s) | 599, 622, 715, 757, 838 |
| RseI | CAYNNNNRTG | 3 cut(s) | 170, 1077, 1268 |
| SacI | GAGCTC | 1 cut(s) | 1638 |
| SacII | CCGCGG | 2 cut(s) | 940, 1139 |
| SaqAI | TTAA | 3 cut(s) | 330, 798, 1539 |
| Sau3AI | GATC | 5 cut(s) | 41, 477, 687, 1039, 1417 |
| SchI | GAGTC | 5 cut(s) | 77, 149, 698, 880, 1292 |
| ScrFI | CCNGG | 7 cut(s) | 351, 482, 828, 894, 979, 1601, 1682 |
| SfaNI | GCATC | 1 cut(s) | 1309 |
| SfcI | CTRYAG | 3 cut(s) | 146, 1095, 1658 |
| SfoI | GGCGCC | 1 cut(s) | 1134 |
| Sfr303I | CCGCGG | 2 cut(s) | 940, 1139 |
| SgrBI | CCGCGG | 2 cut(s) | 940, 1139 |
| SinI | GGWCC | 5 cut(s) | 768, 824, 934, 1006, 1110 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 170, 1077, 1268 |
| SmlI | CTYRAG | 2 cut(s) | 329, 851 |
| SmoI | CTYRAG | 2 cut(s) | 329, 851 |
| Sse9I | AATT | 2 cut(s) | 73, 795 |
| SspDI | GGCGCC | 1 cut(s) | 1132 |
| SspMI | CTAG | 6 cut(s) | 122, 131, 201, 248, 959, 1302 |
| SstI | GAGCTC | 1 cut(s) | 1638 |
| StyD4I | CCNGG | 7 cut(s) | 349, 480, 826, 892, 977, 1599, 1680 |
| StyI | CCWWGG | 2 cut(s) | 670, 1075 |
| TaaI | ACNGT | 4 cut(s) | 379, 589, 1099, 1460 |
| TaiI | ACGT | 5 cut(s) | 12, 627, 791, 1539, 1575 |
| TaqI | TCGA | 3 cut(s) | 138, 441, 1701 |
| TasI | AATT | 2 cut(s) | 73, 795 |
| TfiI | GAWTC | 1 cut(s) | 35 |
| Tru1I | TTAA | 3 cut(s) | 330, 798, 1539 |
| Tru9I | TTAA | 3 cut(s) | 330, 798, 1539 |
| TscAI | CASTG | 5 cut(s) | 34, 123, 274, 1191, 1393 |
| TseFI | GTSAC | 3 cut(s) | 448, 1082, 1204 |
| TseI | GCWGC | 8 cut(s) | 221, 364, 538, 832, 1051, 1090, 1348, 1604 |
| Tsp45I | GTSAC | 3 cut(s) | 448, 1082, 1204 |
| TspDTI | ATGAA | 1 cut(s) | 1605 |
| TspGWI | ACGGA | 2 cut(s) | 84, 147 |
| TspRI | CASTG | 5 cut(s) | 34, 123, 274, 1191, 1393 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 159, 528 |
| Vha464I | CTTAAG | 1 cut(s) | 329 |
| VneI | GTGCAC | 3 cut(s) | 180, 422, 1187 |
| VpaK11BI | GGWCC | 5 cut(s) | 768, 824, 934, 1006, 1110 |
| XapI | RAATTY | 1 cut(s) | 73 |
| XceI | RCATGY | 1 cut(s) | 529 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1073, 1216 |
| XspI | CTAG | 6 cut(s) | 122, 131, 201, 248, 959, 1302 |
| ZraI | GACGTC | 1 cut(s) | 10 |