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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 131 |
| AccB1I | GGYRCC | 4 cut(s) | 786, 1237, 1273, 1366 |
| AccBSI | CCGCTC | 3 cut(s) | 876, 1083, 1373 |
| AccI | GTMKAC | 3 cut(s) | 13, 119, 1253 |
| AclWI | GGATC | 3 cut(s) | 58, 203, 1539 |
| AcoI | YGGCCR | 1 cut(s) | 1166 |
| AcuI | CTGAAG | 3 cut(s) | 921, 1162, 1241 |
| AcyI | GRCGYC | 3 cut(s) | 787, 1238, 1274 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 297, 379, 416, 530, 696, 1011 |
| AflIII | ACRYGT | 2 cut(s) | 1256, 1445 |
| AgsI | TTSAA | 4 cut(s) | 145, 459, 1180, 1188 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1505 |
| AjiI | CACGTC | 1 cut(s) | 1446 |
| AjnI | CCWGG | 2 cut(s) | 436, 550 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 504, 536, 838, 870 |
| AluBI | AGCT | 5 cut(s) | 941, 1020, 1191, 1225, 1294 |
| AluI | AGCT | 5 cut(s) | 941, 1020, 1191, 1225, 1294 |
| Alw21I | GWGCWC | 1 cut(s) | 1022 |
| Alw26I | GTCTC | 6 cut(s) | 268, 335, 583, 1045, 1330, 1492 |
| AlwI | GGATC | 3 cut(s) | 58, 203, 1539 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 59, 592 |
| Ama87I | CYCGRG | 1 cut(s) | 1478 |
| AoxI | GGCC | 6 cut(s) | 224, 248, 743, 1061, 1166, 1522 |
| ApaI | GGGCCC | 1 cut(s) | 1526 |
| ApeKI | GCWGC | 9 cut(s) | 59, 414, 579, 640, 678, 988, 999, 1225, 1470 |
| AsuC2I | CCSGG | 7 cut(s) | 155, 271, 411, 524, 1005, 1479, 1480 |
| AsuHPI | GGTGA | 7 cut(s) | 276, 321, 325, 588, 622, 639, 1138 |
| AvaI | CYCGRG | 1 cut(s) | 1478 |
| AvaII | GGWCC | 8 cut(s) | 370, 445, 559, 635, 726, 1396, 1412, 1490 |
| AxyI | CCTNAGG | 1 cut(s) | 374 |
| BaeGI | GKGCMC | 2 cut(s) | 1371, 1526 |
| BanI | GGYRCC | 4 cut(s) | 786, 1237, 1273, 1366 |
| BanII | GRGCYC | 2 cut(s) | 1022, 1526 |
| BbsI | GAAGAC | 2 cut(s) | 577, 1150 |
| Bbv12I | GWGCWC | 1 cut(s) | 1022 |
| BbvI | GCAGC | 9 cut(s) | 46, 426, 591, 627, 690, 1000, 1011, 1212, 1482 |
| BccI | CCATC | 7 cut(s) | 186, 306, 340, 872, 1285, 1436, 1480 |
| BceAI | ACGGC | 5 cut(s) | 23, 932, 1159, 1330, 1529 |
| BciT130I | CCWGG | 2 cut(s) | 438, 552 |
| BcnI | CCSGG | 7 cut(s) | 155, 271, 411, 524, 1005, 1479, 1480 |
| BcoDI | GTCTC | 6 cut(s) | 268, 335, 583, 1045, 1330, 1492 |
| BfaI | CTAG | 1 cut(s) | 1505 |
| BfoI | RGCGCY | 5 cut(s) | 661, 675, 790, 1241, 1277 |
| BfuAI | ACCTGC | 1 cut(s) | 131 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1165 |
| Bme1390I | CCNGG | 9 cut(s) | 155, 271, 411, 438, 524, 552, 1005, 1479, 1480 |
| Bme18I | GGWCC | 8 cut(s) | 370, 445, 559, 635, 726, 1396, 1412, 1490 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1505 |
| BmeT110I | CYCGRG | 1 cut(s) | 1478 |
| BmgBI | CACGTC | 1 cut(s) | 1446 |
| BmrFI | CCNGG | 9 cut(s) | 155, 271, 411, 438, 524, 552, 1005, 1479, 1480 |
| BmsI | GCATC | 6 cut(s) | 308, 416, 530, 766, 1334, 1563 |
| BoxI | GACNNNNGTC | 1 cut(s) | 474 |
| BpiI | GAAGAC | 2 cut(s) | 577, 1150 |
| BpmI | CTGGAG | 2 cut(s) | 682, 1027 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1021, 1374 |
| BpuEI | CTTGAG | 1 cut(s) | 1378 |
| BpuMI | CCSGG | 7 cut(s) | 155, 271, 411, 524, 1005, 1479, 1480 |
| BsaHI | GRCGYC | 3 cut(s) | 787, 1238, 1274 |
| BsaI | GGTCTC | 2 cut(s) | 1045, 1492 |
| BsaJI | CCNNGG | 9 cut(s) | 236, 260, 296, 336, 605, 695, 1003, 1064, 1478 |
| BsaWI | WCCGGW | 1 cut(s) | 303 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 214, 244, 504, 534, 838, 868, 1072, 1102 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 297, 379, 416, 530, 696, 1011 |
| Bse118I | RCCGGY | 1 cut(s) | 674 |
| Bse1I | ACTGG | 7 cut(s) | 105, 119, 291, 327, 619, 1079, 1106 |
| Bse21I | CCTNAGG | 1 cut(s) | 374 |
| Bse3DI | GCAATG | 1 cut(s) | 1220 |
| BseBI | CCWGG | 2 cut(s) | 438, 552 |
| BseDI | CCNNGG | 9 cut(s) | 236, 260, 296, 336, 605, 695, 1003, 1064, 1478 |
| BseGI | GGATG | 6 cut(s) | 431, 545, 1110, 1325, 1428, 1491 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 297, 379, 416, 530, 696, 1011 |
| BseMI | GCAATG | 1 cut(s) | 1220 |
| BseMII | CTCAG | 4 cut(s) | 388, 502, 1035, 1388 |
| BseNI | ACTGG | 7 cut(s) | 105, 119, 291, 327, 619, 1079, 1106 |
| BsePI | GCGCGC | 1 cut(s) | 1516 |
| BseRI | GAGGAG | 1 cut(s) | 724 |
| BseSI | GKGCMC | 2 cut(s) | 1371, 1526 |
| BseX3I | CGGCCG | 1 cut(s) | 1166 |
| BseXI | GCAGC | 9 cut(s) | 46, 426, 591, 627, 690, 1000, 1011, 1212, 1482 |
| BseYI | CCCAGC | 2 cut(s) | 251, 879 |
| BsgI | GTGCAG | 2 cut(s) | 382, 598 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1169 |
| BshFI | GGCC | 6 cut(s) | 226, 250, 745, 1063, 1168, 1524 |
| BshNI | GGYRCC | 4 cut(s) | 786, 1237, 1273, 1366 |
| BsiEI | CGRYCG | 1 cut(s) | 1169 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1022 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1478 |
| BsiSI | CCGG | 8 cut(s) | 154, 271, 304, 410, 524, 675, 1005, 1479 |
| BslFI | GGGAC | 4 cut(s) | 17, 498, 1398, 1503 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 297, 379, 416, 530, 696, 1011 |
| BsmAI | GTCTC | 6 cut(s) | 268, 335, 583, 1045, 1330, 1492 |
| BsmBI | CGTCTC | 1 cut(s) | 268 |
| BsmFI | GGGAC | 4 cut(s) | 17, 498, 1398, 1503 |
| BsnI | GGCC | 6 cut(s) | 226, 250, 745, 1063, 1168, 1524 |
| Bso31I | GGTCTC | 2 cut(s) | 1045, 1492 |
| BsoBI | CYCGRG | 1 cut(s) | 1478 |
| Bsp120I | GGGCCC | 1 cut(s) | 1522 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1022, 1371, 1526 |
| Bsp143I | GATC | 5 cut(s) | 50, 195, 801, 1527, 1544 |
| Bsp19I | CCATGG | 1 cut(s) | 605 |
| Bsp68I | TCGCGA | 1 cut(s) | 173 |
| BspANI | GGCC | 6 cut(s) | 226, 250, 745, 1063, 1168, 1524 |
| BspCNI | CTCAG | 4 cut(s) | 387, 501, 1034, 1387 |
| BspHI | TCATGA | 1 cut(s) | 833 |
| BspMI | ACCTGC | 1 cut(s) | 131 |
| BspPI | GGATC | 3 cut(s) | 58, 203, 1539 |
| BspQI | GCTCTTC | 1 cut(s) | 1010 |
| BspT107I | GGYRCC | 4 cut(s) | 786, 1237, 1273, 1366 |
| BspTNI | GGTCTC | 2 cut(s) | 1045, 1492 |
| BsrBI | CCGCTC | 3 cut(s) | 876, 1083, 1373 |
| BsrDI | GCAATG | 1 cut(s) | 1220 |
| BsrFI | RCCGGY | 1 cut(s) | 674 |
| BsrI | ACTGG | 7 cut(s) | 105, 119, 291, 327, 619, 1079, 1106 |
| BssAI | RCCGGY | 1 cut(s) | 674 |
| BssECI | CCNNGG | 9 cut(s) | 236, 260, 296, 336, 605, 695, 1003, 1064, 1478 |
| BssHII | GCGCGC | 1 cut(s) | 1516 |
| BssMI | GATC | 5 cut(s) | 50, 195, 801, 1527, 1544 |
| BssNAI | GTATAC | 1 cut(s) | 14 |
| BssNI | GRCGYC | 3 cut(s) | 787, 1238, 1274 |
| BssT1I | CCWWGG | 3 cut(s) | 336, 605, 1064 |
| Bst1107I | GTATAC | 1 cut(s) | 14 |
| Bst2UI | CCWGG | 2 cut(s) | 438, 552 |
| Bst4CI | ACNGT | 7 cut(s) | 261, 360, 402, 516, 576, 594, 1126 |
| Bst6I | CTCTTC | 4 cut(s) | 26, 695, 701, 1010 |
| BstACI | GRCGYC | 3 cut(s) | 787, 1238, 1274 |
| BstDEI | CTNAG | 4 cut(s) | 374, 488, 1021, 1374 |
| BstDSI | CCRYGG | 2 cut(s) | 260, 605 |
| BstF5I | GGATG | 6 cut(s) | 431, 545, 1110, 1325, 1428, 1491 |
| BstH2I | RGCGCY | 5 cut(s) | 661, 675, 790, 1241, 1277 |
| BstKTI | GATC | 5 cut(s) | 53, 198, 804, 1530, 1547 |
| BstMAI | GTCTC | 6 cut(s) | 268, 335, 583, 1045, 1330, 1492 |
| BstMBI | GATC | 5 cut(s) | 50, 195, 801, 1527, 1544 |
| BstMCI | CGRYCG | 1 cut(s) | 1169 |
| BstNI | CCWGG | 2 cut(s) | 438, 552 |
| BstNSI | RCATGY | 1 cut(s) | 1260 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 474 |
| BstSCI | CCNGG | 9 cut(s) | 153, 269, 409, 436, 522, 550, 1003, 1477, 1478 |
| BstSLI | GKGCMC | 2 cut(s) | 1371, 1526 |
| BstV1I | GCAGC | 9 cut(s) | 46, 426, 591, 627, 690, 1000, 1011, 1212, 1482 |
| BstV2I | GAAGAC | 2 cut(s) | 577, 1150 |
| BstZ17I | GTATAC | 1 cut(s) | 14 |
| BstZI | CGGCCG | 1 cut(s) | 1166 |
| Bsu36I | CCTNAGG | 1 cut(s) | 374 |
| BsuRI | GGCC | 6 cut(s) | 226, 250, 745, 1063, 1168, 1524 |
| BtgI | CCRYGG | 2 cut(s) | 260, 605 |
| BtgZI | GCGATG | 2 cut(s) | 205, 331 |
| BtrI | CACGTC | 1 cut(s) | 1446 |
| BtsCI | GGATG | 6 cut(s) | 431, 545, 1110, 1325, 1428, 1491 |
| BtsI | GCAGTG | 2 cut(s) | 776, 1386 |
| BtsIMutI | CAGTG | 4 cut(s) | 626, 776, 804, 1386 |
| BtuMI | TCGCGA | 1 cut(s) | 173 |
| BveI | ACCTGC | 1 cut(s) | 131 |
| CaiI | CAGNNNCTG | 2 cut(s) | 59, 592 |
| CciI | TCATGA | 1 cut(s) | 833 |
| CciNI | GCGGCCGC | 1 cut(s) | 1166 |
| Cfr10I | RCCGGY | 1 cut(s) | 674 |
| Cfr9I | CCCGGG | 1 cut(s) | 1478 |
| CseI | GACGC | 3 cut(s) | 30, 184, 1315 |
| CviAII | CATG | 4 cut(s) | 228, 606, 834, 1257 |
| DdeI | CTNAG | 4 cut(s) | 374, 488, 1021, 1374 |
| DinI | GGCGCC | 3 cut(s) | 788, 1239, 1275 |
| DpnI | GATC | 5 cut(s) | 52, 197, 803, 1529, 1546 |
| DpnII | GATC | 5 cut(s) | 50, 195, 801, 1527, 1544 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1505 |
| EaeI | YGGCCR | 1 cut(s) | 1166 |
| EagI | CGGCCG | 1 cut(s) | 1166 |
| Eam1104I | CTCTTC | 4 cut(s) | 26, 695, 701, 1010 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1505 |
| EarI | CTCTTC | 4 cut(s) | 26, 695, 701, 1010 |
| Ecl136II | GAGCTC | 1 cut(s) | 1020 |
| EclXI | CGGCCG | 1 cut(s) | 1166 |
| Eco130I | CCWWGG | 3 cut(s) | 336, 605, 1064 |
| Eco24I | GRGCYC | 2 cut(s) | 1022, 1526 |
| Eco31I | GGTCTC | 2 cut(s) | 1045, 1492 |
| Eco47I | GGWCC | 8 cut(s) | 370, 445, 559, 635, 726, 1396, 1412, 1490 |
| Eco52I | CGGCCG | 1 cut(s) | 1166 |
| Eco53kI | GAGCTC | 1 cut(s) | 1020 |
| Eco57I | CTGAAG | 3 cut(s) | 921, 1162, 1241 |
| Eco81I | CCTNAGG | 1 cut(s) | 374 |
| Eco88I | CYCGRG | 1 cut(s) | 1478 |
| EcoICRI | GAGCTC | 1 cut(s) | 1020 |
| EcoO109I | RGGNCCY | 2 cut(s) | 370, 1412 |
| EcoRII | CCWGG | 2 cut(s) | 436, 550 |
| EcoT14I | CCWWGG | 3 cut(s) | 336, 605, 1064 |
| EcoT38I | GRGCYC | 2 cut(s) | 1022, 1526 |
| EgeI | GGCGCC | 3 cut(s) | 788, 1239, 1275 |
| EheI | GGCGCC | 3 cut(s) | 788, 1239, 1275 |
| ErhI | CCWWGG | 3 cut(s) | 336, 605, 1064 |
| Esp3I | CGTCTC | 1 cut(s) | 268 |
| FaeI | CATG | 4 cut(s) | 231, 609, 837, 1260 |
| FaqI | GGGAC | 4 cut(s) | 17, 498, 1398, 1503 |
| FatI | CATG | 4 cut(s) | 227, 605, 833, 1256 |
| FblI | GTMKAC | 3 cut(s) | 13, 119, 1253 |
| FokI | GGATG | 6 cut(s) | 438, 552, 1117, 1312, 1415, 1498 |
| FriOI | GRGCYC | 2 cut(s) | 1022, 1526 |
| FspBI | CTAG | 1 cut(s) | 1505 |
| GsaI | CCCAGC | 2 cut(s) | 255, 883 |
| GsuI | CTGGAG | 2 cut(s) | 682, 1027 |
| HaeII | RGCGCY | 5 cut(s) | 661, 675, 790, 1241, 1277 |
| HaeIII | GGCC | 6 cut(s) | 226, 250, 745, 1063, 1168, 1524 |
| HapII | CCGG | 8 cut(s) | 154, 271, 304, 410, 524, 675, 1005, 1479 |
| HgaI | GACGC | 3 cut(s) | 30, 184, 1315 |
| Hin1I | GRCGYC | 3 cut(s) | 787, 1238, 1274 |
| Hin1II | CATG | 4 cut(s) | 231, 609, 837, 1260 |
| HincII | GTYRAC | 1 cut(s) | 120 |
| HindII | GTYRAC | 1 cut(s) | 120 |
| HindIII | AAGCTT | 1 cut(s) | 1292 |
| HinfI | GANTC | 6 cut(s) | 486, 601, 685, 808, 1087, 1536 |
| HpaII | CCGG | 8 cut(s) | 154, 271, 304, 410, 524, 675, 1005, 1479 |
| HphI | GGTGA | 7 cut(s) | 276, 321, 325, 588, 622, 639, 1138 |
| Hpy166II | GTNNAC | 4 cut(s) | 14, 120, 267, 1254 |
| Hpy188I | TCNGA | 5 cut(s) | 55, 297, 469, 1443, 1511 |
| Hpy188III | TCNNGA | 5 cut(s) | 172, 805, 834, 1044, 1357 |
| Hpy8I | GTNNAC | 4 cut(s) | 14, 120, 267, 1254 |
| Hpy99I | CGWCG | 4 cut(s) | 178, 918, 1443, 1515 |
| HpyAV | CCTTC | 9 cut(s) | 180, 735, 756, 835, 945, 1224, 1263, 1402, 1573 |
| HpyCH4III | ACNGT | 7 cut(s) | 261, 360, 402, 516, 576, 594, 1126 |
| HpyCH4IV | ACGT | 3 cut(s) | 277, 1250, 1445 |
| HpyCH4V | TGCA | 3 cut(s) | 363, 579, 769 |
| HpyF3I | CTNAG | 4 cut(s) | 374, 488, 1021, 1374 |
| HpySE526I | ACGT | 3 cut(s) | 277, 1250, 1445 |
| Hsp92I | GRCGYC | 3 cut(s) | 787, 1238, 1274 |
| Hsp92II | CATG | 4 cut(s) | 231, 609, 837, 1260 |
| KasI | GGCGCC | 3 cut(s) | 786, 1237, 1273 |
| KflI | GGGWCCC | 1 cut(s) | 1412 |
| KroI | GCCGGC | 1 cut(s) | 674 |
| KroNI | GCCGGC | 1 cut(s) | 676 |
| Kzo9I | GATC | 5 cut(s) | 50, 195, 801, 1527, 1544 |
| LguI | GCTCTTC | 1 cut(s) | 1010 |
| LmnI | GCTCC | 4 cut(s) | 142, 525, 846, 1080 |
| Lsp1109I | GCAGC | 9 cut(s) | 46, 426, 591, 627, 690, 1000, 1011, 1212, 1482 |
| LweI | GCATC | 6 cut(s) | 308, 416, 530, 766, 1334, 1563 |
| MaeI | CTAG | 1 cut(s) | 1505 |
| MaeII | ACGT | 3 cut(s) | 277, 1250, 1445 |
| MaeIII | GTNAC | 5 cut(s) | 110, 594, 627, 968, 1537 |
| MalI | GATC | 5 cut(s) | 52, 197, 803, 1529, 1546 |
| MbiI | CCGCTC | 3 cut(s) | 876, 1083, 1373 |
| MboI | GATC | 5 cut(s) | 50, 195, 801, 1527, 1544 |
| MboII | GAAGA | 9 cut(s) | 40, 43, 355, 582, 712, 718, 1027, 1155, 1582 |
| MfeI | CAATTG | 1 cut(s) | 920 |
| MhlI | GDGCHC | 3 cut(s) | 1022, 1371, 1526 |
| MluCI | AATT | 3 cut(s) | 459, 920, 1031 |
| Mly113I | GGCGCC | 3 cut(s) | 787, 1238, 1274 |
| MlyI | GAGTC | 6 cut(s) | 480, 610, 679, 802, 1096, 1545 |
| MmeI | TCCRAC | 3 cut(s) | 492, 1421, 1534 |
| MroNI | GCCGGC | 1 cut(s) | 674 |
| MseI | TTAA | 1 cut(s) | 995 |
| MslI | CAYNNNNRTG | 1 cut(s) | 869 |
| MspA1I | CMGCKG | 3 cut(s) | 417, 531, 640 |
| MspI | CCGG | 8 cut(s) | 154, 271, 304, 410, 524, 675, 1005, 1479 |
| MspR9I | CCNGG | 9 cut(s) | 155, 271, 411, 438, 524, 552, 1005, 1479, 1480 |
| MteI | GCGCNGCGC | 1 cut(s) | 1471 |
| MunI | CAATTG | 1 cut(s) | 920 |
| MvaI | CCWGG | 2 cut(s) | 438, 552 |
| NaeI | GCCGGC | 1 cut(s) | 676 |
| NarI | GGCGCC | 3 cut(s) | 787, 1238, 1274 |
| NciI | CCSGG | 7 cut(s) | 155, 271, 411, 524, 1005, 1479, 1480 |
| NcoI | CCATGG | 1 cut(s) | 605 |
| NdeII | GATC | 5 cut(s) | 50, 195, 801, 1527, 1544 |
| NgoMIV | GCCGGC | 1 cut(s) | 674 |
| NlaIII | CATG | 4 cut(s) | 231, 609, 837, 1260 |
| NmeAIII | GCCGAG | 3 cut(s) | 261, 720, 922 |
| NmuCI | GTSAC | 3 cut(s) | 594, 627, 1537 |
| NotI | GCGGCCGC | 1 cut(s) | 1166 |
| NruI | TCGCGA | 1 cut(s) | 173 |
| NspI | RCATGY | 1 cut(s) | 1260 |
| PagI | TCATGA | 1 cut(s) | 833 |
| PauI | GCGCGC | 1 cut(s) | 1516 |
| PciI | ACATGT | 1 cut(s) | 1256 |
| PciSI | GCTCTTC | 1 cut(s) | 1010 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 980 |
| PdiI | GCCGGC | 1 cut(s) | 676 |
| PleI | GAGTC | 6 cut(s) | 480, 609, 679, 802, 1095, 1544 |
| PluTI | GGCGCC | 3 cut(s) | 790, 1241, 1277 |
| PpsI | GAGTC | 6 cut(s) | 480, 609, 679, 802, 1095, 1544 |
| PpuMI | RGGWCCY | 2 cut(s) | 370, 1412 |
| PscI | ACATGT | 1 cut(s) | 1256 |
| PshAI | GACNNNNGTC | 1 cut(s) | 474 |
| Psp124BI | GAGCTC | 1 cut(s) | 1022 |
| Psp5II | RGGWCCY | 2 cut(s) | 370, 1412 |
| Psp6I | CCWGG | 2 cut(s) | 436, 550 |
| PspFI | CCCAGC | 2 cut(s) | 251, 879 |
| PspGI | CCWGG | 2 cut(s) | 436, 550 |
| PspOMI | GGGCCC | 1 cut(s) | 1522 |
| PspPPI | RGGWCCY | 2 cut(s) | 370, 1412 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 390, 422 |
| PstNI | CAGNNNCTG | 2 cut(s) | 59, 592 |
| PteI | GCGCGC | 1 cut(s) | 1516 |
| RruI | TCGCGA | 1 cut(s) | 173 |
| RseI | CAYNNNNRTG | 1 cut(s) | 869 |
| SacI | GAGCTC | 1 cut(s) | 1022 |
| SalI | GTCGAC | 1 cut(s) | 118 |
| SapI | GCTCTTC | 1 cut(s) | 1010 |
| SaqAI | TTAA | 1 cut(s) | 995 |
| Sau3AI | GATC | 5 cut(s) | 50, 195, 801, 1527, 1544 |
| SchI | GAGTC | 6 cut(s) | 480, 610, 679, 802, 1096, 1545 |
| ScrFI | CCNGG | 9 cut(s) | 155, 271, 411, 438, 524, 552, 1005, 1479, 1480 |
| SduI | GDGCHC | 3 cut(s) | 1022, 1371, 1526 |
| SfaNI | GCATC | 6 cut(s) | 308, 416, 530, 766, 1334, 1563 |
| SfoI | GGCGCC | 3 cut(s) | 788, 1239, 1275 |
| SinI | GGWCC | 8 cut(s) | 370, 445, 559, 635, 726, 1396, 1412, 1490 |
| SmaI | CCCGGG | 1 cut(s) | 1480 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 869 |
| SmlI | CTYRAG | 1 cut(s) | 1357 |
| SmoI | CTYRAG | 1 cut(s) | 1357 |
| Sse9I | AATT | 3 cut(s) | 459, 920, 1031 |
| SspDI | GGCGCC | 3 cut(s) | 786, 1237, 1273 |
| SspMI | CTAG | 1 cut(s) | 1505 |
| SstI | GAGCTC | 1 cut(s) | 1022 |
| StyD4I | CCNGG | 9 cut(s) | 153, 269, 409, 436, 522, 550, 1003, 1477, 1478 |
| StyI | CCWWGG | 3 cut(s) | 336, 605, 1064 |
| TaaI | ACNGT | 7 cut(s) | 261, 360, 402, 516, 576, 594, 1126 |
| TaiI | ACGT | 3 cut(s) | 280, 1253, 1448 |
| TaqI | TCGA | 4 cut(s) | 119, 760, 1280, 1543 |
| TasI | AATT | 3 cut(s) | 459, 920, 1031 |
| Tru1I | TTAA | 1 cut(s) | 995 |
| Tru9I | TTAA | 1 cut(s) | 995 |
| TscAI | CASTG | 4 cut(s) | 626, 776, 804, 1386 |
| TseFI | GTSAC | 3 cut(s) | 594, 627, 1537 |
| TseI | GCWGC | 9 cut(s) | 59, 414, 579, 640, 678, 988, 999, 1225, 1470 |
| Tsp45I | GTSAC | 3 cut(s) | 594, 627, 1537 |
| TspDTI | ATGAA | 2 cut(s) | 822, 1126 |
| TspGWI | ACGGA | 3 cut(s) | 129, 438, 552 |
| TspMI | CCCGGG | 1 cut(s) | 1478 |
| TspRI | CASTG | 4 cut(s) | 626, 776, 804, 1386 |
| VpaK11BI | GGWCC | 8 cut(s) | 370, 445, 559, 635, 726, 1396, 1412, 1490 |
| XceI | RCATGY | 1 cut(s) | 1260 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 334, 1071 |
| XmaI | CCCGGG | 1 cut(s) | 1478 |
| XmiI | GTMKAC | 3 cut(s) | 13, 119, 1253 |
| XspI | CTAG | 1 cut(s) | 1505 |