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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 95 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 131 |
| Acc36I | ACCTGC | 1 cut(s) | 95 |
| AccB1I | GGYRCC | 2 cut(s) | 30, 405 |
| AccBSI | CCGCTC | 2 cut(s) | 166, 329 |
| AccI | GTMKAC | 1 cut(s) | 240 |
| AccII | CGCG | 1 cut(s) | 434 |
| AclWI | GGATC | 1 cut(s) | 539 |
| AcoI | YGGCCR | 1 cut(s) | 23 |
| AcyI | GRCGYC | 2 cut(s) | 31, 429 |
| AdeI | CACNNNGTG | 1 cut(s) | 494 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 40, 166, 280, 468, 481 |
| AgsI | TTSAA | 1 cut(s) | 454 |
| AluBI | AGCT | 2 cut(s) | 313, 518 |
| AluI | AGCT | 2 cut(s) | 313, 518 |
| Alw21I | GWGCWC | 1 cut(s) | 315 |
| Alw26I | GTCTC | 3 cut(s) | 200, 359, 502 |
| AlwI | GGATC | 1 cut(s) | 539 |
| Ama87I | CYCGRG | 1 cut(s) | 161 |
| AoxI | GGCC | 5 cut(s) | 23, 44, 98, 256, 261 |
| ApaI | GGGCCC | 1 cut(s) | 48 |
| ApeKI | GCWGC | 1 cut(s) | 285 |
| AspLEI | GCGC | 1 cut(s) | 33 |
| AspS9I | GGNCC | 5 cut(s) | 44, 45, 99, 257, 472 |
| AsuC2I | CCSGG | 2 cut(s) | 260, 321 |
| AsuHPI | GGTGA | 4 cut(s) | 95, 263, 492, 526 |
| AvaI | CYCGRG | 1 cut(s) | 161 |
| AvaII | GGWCC | 1 cut(s) | 472 |
| BaeGI | GKGCMC | 1 cut(s) | 48 |
| BanI | GGYRCC | 2 cut(s) | 30, 405 |
| BanII | GRGCYC | 2 cut(s) | 48, 315 |
| Bbv12I | GWGCWC | 1 cut(s) | 315 |
| BbvI | GCAGC | 1 cut(s) | 272 |
| BcnI | CCSGG | 2 cut(s) | 260, 321 |
| BcoDI | GTCTC | 3 cut(s) | 200, 359, 502 |
| BfaI | CTAG | 1 cut(s) | 122 |
| BfoI | RGCGCY | 1 cut(s) | 34 |
| BfuAI | ACCTGC | 1 cut(s) | 95 |
| BisI | GCNGC | 5 cut(s) | 23, 286, 304, 330, 432 |
| BlsI | GCNGC | 5 cut(s) | 24, 287, 305, 331, 433 |
| Bme1390I | CCNGG | 2 cut(s) | 260, 321 |
| Bme18I | GGWCC | 1 cut(s) | 472 |
| BmeT110I | CYCGRG | 1 cut(s) | 161 |
| BmgT120I | GGNCC | 5 cut(s) | 44, 45, 99, 257, 472 |
| BmiI | GGNNCC | 6 cut(s) | 32, 45, 46, 407, 473, 486 |
| BmrFI | CCNGG | 2 cut(s) | 260, 321 |
| BmsI | GCATC | 2 cut(s) | 9, 427 |
| BoxI | GACNNNNGTC | 2 cut(s) | 90, 236 |
| BpuMI | CCSGG | 2 cut(s) | 260, 321 |
| BsaHI | GRCGYC | 2 cut(s) | 31, 429 |
| BsaI | GGTCTC | 1 cut(s) | 359 |
| BsaJI | CCNNGG | 5 cut(s) | 26, 88, 319, 432, 475 |
| BsaWI | WCCGGW | 1 cut(s) | 502 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 40, 166, 280, 468, 481 |
| Bse118I | RCCGGY | 2 cut(s) | 96, 536 |
| BseDI | CCNNGG | 5 cut(s) | 26, 88, 319, 432, 475 |
| BseGI | GGATG | 3 cut(s) | 21, 400, 442 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 40, 166, 280, 468, 481 |
| BseRI | GAGGAG | 1 cut(s) | 356 |
| BseSI | GKGCMC | 1 cut(s) | 48 |
| BseX3I | CGGCCG | 1 cut(s) | 23 |
| BseXI | GCAGC | 1 cut(s) | 272 |
| Bsh1236I | CGCG | 1 cut(s) | 434 |
| Bsh1285I | CGRYCG | 4 cut(s) | 26, 156, 212, 325 |
| BshFI | GGCC | 5 cut(s) | 25, 46, 100, 258, 263 |
| BshNI | GGYRCC | 2 cut(s) | 30, 405 |
| BsiEI | CGRYCG | 4 cut(s) | 26, 156, 212, 325 |
| BsiHKAI | GWGCWC | 1 cut(s) | 315 |
| BsiHKCI | CYCGRG | 1 cut(s) | 161 |
| BsiSI | CCGG | 6 cut(s) | 97, 260, 321, 389, 503, 537 |
| BslFI | GGGAC | 1 cut(s) | 485 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 40, 166, 280, 468, 481 |
| BsmAI | GTCTC | 3 cut(s) | 200, 359, 502 |
| BsmFI | GGGAC | 1 cut(s) | 485 |
| BsnI | GGCC | 5 cut(s) | 25, 46, 100, 258, 263 |
| Bso31I | GGTCTC | 1 cut(s) | 359 |
| BsoBI | CYCGRG | 1 cut(s) | 161 |
| Bsp120I | GGGCCC | 1 cut(s) | 44 |
| Bsp1286I | GDGCHC | 2 cut(s) | 48, 315 |
| Bsp143I | GATC | 3 cut(s) | 35, 268, 531 |
| BspANI | GGCC | 5 cut(s) | 25, 46, 100, 258, 263 |
| BspFNI | CGCG | 1 cut(s) | 434 |
| BspLI | GGNNCC | 6 cut(s) | 32, 45, 46, 407, 473, 486 |
| BspMI | ACCTGC | 1 cut(s) | 95 |
| BspPI | GGATC | 1 cut(s) | 539 |
| BspQI | GCTCTTC | 1 cut(s) | 107 |
| BspT107I | GGYRCC | 2 cut(s) | 30, 405 |
| BspTNI | GGTCTC | 1 cut(s) | 359 |
| BsrBI | CCGCTC | 2 cut(s) | 166, 329 |
| BsrFI | RCCGGY | 2 cut(s) | 96, 536 |
| BssAI | RCCGGY | 2 cut(s) | 96, 536 |
| BssECI | CCNNGG | 5 cut(s) | 26, 88, 319, 432, 475 |
| BssMI | GATC | 3 cut(s) | 35, 268, 531 |
| BssNI | GRCGYC | 2 cut(s) | 31, 429 |
| Bst4CI | ACNGT | 3 cut(s) | 89, 238, 275 |
| Bst6I | CTCTTC | 2 cut(s) | 107, 182 |
| BstACI | GRCGYC | 2 cut(s) | 31, 429 |
| BstC8I | GCNNGC | 3 cut(s) | 98, 102, 315 |
| BstDSI | CCRYGG | 2 cut(s) | 88, 432 |
| BstEII | GGTNACC | 1 cut(s) | 83 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 479 |
| BstF5I | GGATG | 3 cut(s) | 21, 400, 442 |
| BstFNI | CGCG | 1 cut(s) | 434 |
| BstH2I | RGCGCY | 1 cut(s) | 34 |
| BstHHI | GCGC | 1 cut(s) | 33 |
| BstKTI | GATC | 3 cut(s) | 38, 271, 534 |
| BstMAI | GTCTC | 3 cut(s) | 200, 359, 502 |
| BstMBI | GATC | 3 cut(s) | 35, 268, 531 |
| BstMCI | CGRYCG | 4 cut(s) | 26, 156, 212, 325 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 28, 437 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 90, 236 |
| BstPI | GGTNACC | 1 cut(s) | 83 |
| BstSCI | CCNGG | 2 cut(s) | 258, 319 |
| BstSLI | GKGCMC | 1 cut(s) | 48 |
| BstUI | CGCG | 1 cut(s) | 434 |
| BstV1I | GCAGC | 1 cut(s) | 272 |
| BstZI | CGGCCG | 1 cut(s) | 23 |
| BsuRI | GGCC | 5 cut(s) | 25, 46, 100, 258, 263 |
| BtgI | CCRYGG | 2 cut(s) | 88, 432 |
| BtsCI | GGATG | 3 cut(s) | 21, 400, 442 |
| BtsI | GCAGTG | 1 cut(s) | 332 |
| BtsIMutI | CAGTG | 1 cut(s) | 332 |
| BveI | ACCTGC | 1 cut(s) | 95 |
| Cac8I | GCNNGC | 3 cut(s) | 98, 102, 315 |
| CfoI | GCGC | 1 cut(s) | 33 |
| Cfr10I | RCCGGY | 2 cut(s) | 96, 536 |
| Cfr13I | GGNCC | 5 cut(s) | 44, 45, 99, 257, 472 |
| Cfr42I | CCGCGG | 1 cut(s) | 435 |
| CseI | GACGC | 1 cut(s) | 437 |
| CviAII | CATG | 2 cut(s) | 289, 492 |
| DinI | GGCGCC | 1 cut(s) | 32 |
| DpnI | GATC | 3 cut(s) | 37, 270, 533 |
| DpnII | GATC | 3 cut(s) | 35, 268, 531 |
| DraIII | CACNNNGTG | 1 cut(s) | 494 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 131 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 131 |
| EaeI | YGGCCR | 1 cut(s) | 23 |
| EagI | CGGCCG | 1 cut(s) | 23 |
| Eam1104I | CTCTTC | 2 cut(s) | 107, 182 |
| EarI | CTCTTC | 2 cut(s) | 107, 182 |
| EciI | GGCGGA | 1 cut(s) | 512 |
| Ecl136II | GAGCTC | 1 cut(s) | 313 |
| EclXI | CGGCCG | 1 cut(s) | 23 |
| Eco24I | GRGCYC | 2 cut(s) | 48, 315 |
| Eco31I | GGTCTC | 1 cut(s) | 359 |
| Eco47I | GGWCC | 1 cut(s) | 472 |
| Eco52I | CGGCCG | 1 cut(s) | 23 |
| Eco53kI | GAGCTC | 1 cut(s) | 313 |
| Eco88I | CYCGRG | 1 cut(s) | 161 |
| Eco91I | GGTNACC | 1 cut(s) | 83 |
| EcoICRI | GAGCTC | 1 cut(s) | 313 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 479 |
| EcoO109I | RGGNCCY | 2 cut(s) | 44, 472 |
| EcoO65I | GGTNACC | 1 cut(s) | 83 |
| EcoT38I | GRGCYC | 2 cut(s) | 48, 315 |
| EgeI | GGCGCC | 1 cut(s) | 32 |
| EheI | GGCGCC | 1 cut(s) | 32 |
| FaeI | CATG | 2 cut(s) | 292, 495 |
| FaiI | YATR | 4 cut(s) | 139, 141, 290, 493 |
| FaqI | GGGAC | 1 cut(s) | 485 |
| FatI | CATG | 2 cut(s) | 288, 491 |
| FauI | CCCGC | 4 cut(s) | 109, 159, 330, 462 |
| FauNDI | CATATG | 1 cut(s) | 139 |
| FblI | GTMKAC | 1 cut(s) | 240 |
| Fnu4HI | GCNGC | 5 cut(s) | 23, 286, 304, 330, 432 |
| FokI | GGATG | 3 cut(s) | 28, 407, 449 |
| FriOI | GRGCYC | 2 cut(s) | 48, 315 |
| Fsp4HI | GCNGC | 5 cut(s) | 23, 286, 304, 330, 432 |
| FspBI | CTAG | 1 cut(s) | 122 |
| GlaI | GCGC | 1 cut(s) | 32 |
| GluI | GCNGC | 5 cut(s) | 23, 286, 304, 330, 432 |
| HaeII | RGCGCY | 1 cut(s) | 34 |
| HaeIII | GGCC | 5 cut(s) | 25, 46, 100, 258, 263 |
| HapII | CCGG | 6 cut(s) | 97, 260, 321, 389, 503, 537 |
| HgaI | GACGC | 1 cut(s) | 437 |
| HhaI | GCGC | 1 cut(s) | 33 |
| Hin1I | GRCGYC | 2 cut(s) | 31, 429 |
| Hin1II | CATG | 2 cut(s) | 292, 495 |
| Hin6I | GCGC | 1 cut(s) | 31 |
| HinP1I | GCGC | 1 cut(s) | 31 |
| HincII | GTYRAC | 2 cut(s) | 6, 241 |
| HindII | GTYRAC | 2 cut(s) | 6, 241 |
| HinfI | GANTC | 1 cut(s) | 125 |
| HpaII | CCGG | 6 cut(s) | 97, 260, 321, 389, 503, 537 |
| HphI | GGTGA | 4 cut(s) | 95, 263, 492, 526 |
| Hpy166II | GTNNAC | 2 cut(s) | 6, 241 |
| Hpy188I | TCNGA | 2 cut(s) | 421, 479 |
| Hpy188III | TCNNGA | 2 cut(s) | 151, 199 |
| Hpy8I | GTNNAC | 2 cut(s) | 6, 241 |
| Hpy99I | CGWCG | 3 cut(s) | 242, 283, 431 |
| HpyAV | CCTTC | 5 cut(s) | 208, 262, 274, 522, 539 |
| HpyCH4III | ACNGT | 3 cut(s) | 89, 238, 275 |
| HpyCH4V | TGCA | 2 cut(s) | 189, 288 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 28, 437 |
| Hsp92I | GRCGYC | 2 cut(s) | 31, 429 |
| Hsp92II | CATG | 2 cut(s) | 292, 495 |
| HspAI | GCGC | 1 cut(s) | 31 |
| KasI | GGCGCC | 1 cut(s) | 30 |
| KroI | GCCGGC | 1 cut(s) | 96 |
| KroNI | GCCGGC | 1 cut(s) | 98 |
| KspI | CCGCGG | 1 cut(s) | 435 |
| Kzo9I | GATC | 3 cut(s) | 35, 268, 531 |
| LguI | GCTCTTC | 1 cut(s) | 107 |
| LmnI | GCTCC | 1 cut(s) | 505 |
| LpnPI | CCDG | 7 cut(s) | 90, 110, 273, 334, 346, 402, 516 |
| Lsp1109I | GCAGC | 1 cut(s) | 272 |
| LweI | GCATC | 2 cut(s) | 9, 427 |
| MaeI | CTAG | 1 cut(s) | 122 |
| MaeIII | GTNAC | 1 cut(s) | 83 |
| MalI | GATC | 3 cut(s) | 37, 270, 533 |
| MbiI | CCGCTC | 2 cut(s) | 166, 329 |
| MboI | GATC | 3 cut(s) | 35, 268, 531 |
| MboII | GAAGA | 3 cut(s) | 68, 124, 169 |
| MhlI | GDGCHC | 2 cut(s) | 48, 315 |
| Mly113I | GGCGCC | 1 cut(s) | 31 |
| MlyI | GAGTC | 1 cut(s) | 119 |
| MnlI | CCTC | 8 cut(s) | 6, 21, 185, 334, 367, 385, 475, 485 |
| MroNI | GCCGGC | 1 cut(s) | 96 |
| MseI | TTAA | 2 cut(s) | 465, 550 |
| MspA1I | CMGCKG | 1 cut(s) | 434 |
| MspI | CCGG | 6 cut(s) | 97, 260, 321, 389, 503, 537 |
| MspR9I | CCNGG | 2 cut(s) | 260, 321 |
| MvnI | CGCG | 1 cut(s) | 434 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 28, 437 |
| NaeI | GCCGGC | 1 cut(s) | 98 |
| NarI | GGCGCC | 1 cut(s) | 31 |
| NciI | CCSGG | 2 cut(s) | 260, 321 |
| NdeI | CATATG | 1 cut(s) | 139 |
| NdeII | GATC | 3 cut(s) | 35, 268, 531 |
| NgoMIV | GCCGGC | 1 cut(s) | 96 |
| NlaIII | CATG | 2 cut(s) | 292, 495 |
| NlaIV | GGNNCC | 6 cut(s) | 32, 45, 46, 407, 473, 486 |
| NmeAIII | GCCGAG | 2 cut(s) | 51, 169 |
| NmuCI | GTSAC | 1 cut(s) | 83 |
| PaqCI | CACCTGC | 1 cut(s) | 95 |
| PciSI | GCTCTTC | 1 cut(s) | 107 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 141, 306 |
| PdiI | GCCGGC | 1 cut(s) | 98 |
| PflFI | GACNNNGTC | 1 cut(s) | 415 |
| PkrI | GCNGC | 5 cut(s) | 24, 287, 305, 331, 433 |
| PleI | GAGTC | 1 cut(s) | 119 |
| PluTI | GGCGCC | 1 cut(s) | 34 |
| PpsI | GAGTC | 1 cut(s) | 119 |
| PpuMI | RGGWCCY | 1 cut(s) | 472 |
| PshAI | GACNNNNGTC | 2 cut(s) | 90, 236 |
| Psp124BI | GAGCTC | 1 cut(s) | 315 |
| Psp5II | RGGWCCY | 1 cut(s) | 472 |
| PspEI | GGTNACC | 1 cut(s) | 83 |
| PspN4I | GGNNCC | 6 cut(s) | 32, 45, 46, 407, 473, 486 |
| PspOMI | GGGCCC | 1 cut(s) | 44 |
| PspPI | GGNCC | 5 cut(s) | 44, 45, 99, 257, 472 |
| PspPPI | RGGWCCY | 1 cut(s) | 472 |
| PsyI | GACNNNGTC | 1 cut(s) | 415 |
| SacI | GAGCTC | 1 cut(s) | 315 |
| SacII | CCGCGG | 1 cut(s) | 435 |
| SalI | GTCGAC | 1 cut(s) | 239 |
| SapI | GCTCTTC | 1 cut(s) | 107 |
| SaqAI | TTAA | 2 cut(s) | 465, 550 |
| SatI | GCNGC | 5 cut(s) | 23, 286, 304, 330, 432 |
| Sau3AI | GATC | 3 cut(s) | 35, 268, 531 |
| Sau96I | GGNCC | 5 cut(s) | 44, 45, 99, 257, 472 |
| SchI | GAGTC | 1 cut(s) | 119 |
| ScrFI | CCNGG | 2 cut(s) | 260, 321 |
| SduI | GDGCHC | 2 cut(s) | 48, 315 |
| SetI | ASST | 8 cut(s) | 85, 109, 123, 186, 315, 477, 520, 550 |
| SfaNI | GCATC | 2 cut(s) | 9, 427 |
| SfoI | GGCGCC | 1 cut(s) | 32 |
| Sfr303I | CCGCGG | 1 cut(s) | 435 |
| SgrAI | CRCCGGYG | 1 cut(s) | 536 |
| SgrBI | CCGCGG | 1 cut(s) | 435 |
| SinI | GGWCC | 1 cut(s) | 472 |
| SspDI | GGCGCC | 1 cut(s) | 30 |
| SspMI | CTAG | 1 cut(s) | 122 |
| SstI | GAGCTC | 1 cut(s) | 315 |
| StyD4I | CCNGG | 2 cut(s) | 258, 319 |
| TaaI | ACNGT | 3 cut(s) | 89, 238, 275 |
| TaqI | TCGA | 5 cut(s) | 200, 240, 267, 309, 325 |
| TaqII | GACCGA | 2 cut(s) | 170, 226 |
| TauI | GCSGC | 4 cut(s) | 25, 306, 332, 434 |
| Tru1I | TTAA | 2 cut(s) | 465, 550 |
| Tru9I | TTAA | 2 cut(s) | 465, 550 |
| TscAI | CASTG | 1 cut(s) | 339 |
| TseFI | GTSAC | 1 cut(s) | 83 |
| TseI | GCWGC | 1 cut(s) | 285 |
| Tsp45I | GTSAC | 1 cut(s) | 83 |
| TspDTI | ATGAA | 1 cut(s) | 362 |
| TspGWI | ACGGA | 1 cut(s) | 267 |
| TspRI | CASTG | 1 cut(s) | 339 |
| Tth111I | GACNNNGTC | 1 cut(s) | 415 |
| VpaK11BI | GGWCC | 1 cut(s) | 472 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 479 |
| XmiI | GTMKAC | 1 cut(s) | 240 |
| XspI | CTAG | 1 cut(s) | 122 |