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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 817 |
| AatII | GACGTC | 2 cut(s) | 311, 360 |
| Acc36I | ACCTGC | 1 cut(s) | 761 |
| Acc65I | GGTACC | 1 cut(s) | 896 |
| AccB1I | GGYRCC | 3 cut(s) | 644, 680, 896 |
| AccBSI | CCGCTC | 2 cut(s) | 400, 451 |
| AccII | CGCG | 5 cut(s) | 14, 226, 260, 363, 956 |
| AcoI | YGGCCR | 1 cut(s) | 378 |
| AcsI | RAATTY | 1 cut(s) | 983 |
| AcuI | CTGAAG | 2 cut(s) | 238, 576 |
| AcvI | CACGTG | 1 cut(s) | 860 |
| AcyI | GRCGYC | 4 cut(s) | 308, 357, 645, 681 |
| AfaI | GTAC | 3 cut(s) | 565, 775, 898 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 328, 504, 770, 815, 850 |
| AflII | CTTAAG | 1 cut(s) | 611 |
| AflIII | ACRYGT | 1 cut(s) | 409 |
| AgsI | TTSAA | 4 cut(s) | 587, 595, 670, 974 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 912 |
| AjnI | CCWGG | 1 cut(s) | 393 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 155, 156, 187, 188 |
| AluBI | AGCT | 7 cut(s) | 121, 337, 370, 554, 610, 767, 923 |
| AluI | AGCT | 7 cut(s) | 121, 337, 370, 554, 610, 767, 923 |
| Alw21I | GWGCWC | 1 cut(s) | 339 |
| Alw26I | GTCTC | 5 cut(s) | 9, 348, 418, 737, 899 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 322 |
| Ama87I | CYCGRG | 4 cut(s) | 648, 781, 885, 924 |
| AoxI | GGCC | 5 cut(s) | 42, 60, 378, 651, 799 |
| ApaI | GGGCCC | 1 cut(s) | 46 |
| ApeKI | GCWGC | 9 cut(s) | 71, 316, 442, 487, 569, 572, 767, 786, 977 |
| ApoI | RAATTY | 1 cut(s) | 983 |
| Asp718I | GGTACC | 1 cut(s) | 896 |
| AspLEI | GCGC | 6 cut(s) | 106, 228, 260, 647, 683, 958 |
| AspS9I | GGNCC | 7 cut(s) | 42, 43, 61, 651, 800, 819, 930 |
| AsuC2I | CCSGG | 4 cut(s) | 649, 650, 886, 887 |
| AsuHPI | GGTGA | 1 cut(s) | 545 |
| AsuII | TTCGAA | 1 cut(s) | 987 |
| AvaI | CYCGRG | 4 cut(s) | 648, 781, 885, 924 |
| AvaII | GGWCC | 2 cut(s) | 819, 930 |
| BaeGI | GKGCMC | 1 cut(s) | 46 |
| BalI | TGGCCA | 1 cut(s) | 380 |
| BanI | GGYRCC | 3 cut(s) | 644, 680, 896 |
| BanII | GRGCYC | 2 cut(s) | 46, 339 |
| BbrPI | CACGTG | 1 cut(s) | 860 |
| Bbv12I | GWGCWC | 1 cut(s) | 339 |
| BbvI | GCAGC | 9 cut(s) | 58, 328, 429, 499, 556, 559, 754, 798, 989 |
| BccI | CCATC | 4 cut(s) | 189, 389, 502, 887 |
| BceAI | ACGGC | 3 cut(s) | 33, 249, 949 |
| BciT130I | CCWGG | 1 cut(s) | 395 |
| BcnI | CCSGG | 4 cut(s) | 649, 650, 886, 887 |
| BcoDI | GTCTC | 5 cut(s) | 9, 348, 418, 737, 899 |
| BfaI | CTAG | 1 cut(s) | 122 |
| BfmI | CTRYAG | 2 cut(s) | 443, 768 |
| BfoI | RGCGCY | 3 cut(s) | 107, 648, 684 |
| BfrI | CTTAAG | 1 cut(s) | 611 |
| BfuAI | ACCTGC | 1 cut(s) | 761 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 68 |
| Bme1390I | CCNGG | 5 cut(s) | 395, 649, 650, 886, 887 |
| Bme18I | GGWCC | 2 cut(s) | 819, 930 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 912 |
| BmeT110I | CYCGRG | 4 cut(s) | 648, 781, 885, 924 |
| BmgT120I | GGNCC | 7 cut(s) | 42, 43, 61, 651, 800, 819, 930 |
| BmiI | GGNNCC | 8 cut(s) | 43, 44, 646, 682, 820, 821, 898, 931 |
| BmrFI | CCNGG | 5 cut(s) | 395, 649, 650, 886, 887 |
| BmrI | ACTGGG | 2 cut(s) | 206, 906 |
| BmuI | ACTGGG | 2 cut(s) | 206, 906 |
| BoxI | GACNNNNGTC | 1 cut(s) | 749 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 110, 142 |
| BpmI | CTGGAG | 2 cut(s) | 416, 893 |
| Bpu10I | CCTNAGC | 2 cut(s) | 338, 462 |
| Bpu14I | TTCGAA | 1 cut(s) | 987 |
| BpuMI | CCSGG | 4 cut(s) | 649, 650, 886, 887 |
| BsaAI | YACGTR | 1 cut(s) | 860 |
| BsaHI | GRCGYC | 4 cut(s) | 308, 357, 645, 681 |
| BsaI | GGTCTC | 1 cut(s) | 899 |
| BsaJI | CCNNGG | 4 cut(s) | 361, 627, 648, 885 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 15, 45 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 328, 504, 770, 815, 850 |
| Bse118I | RCCGGY | 1 cut(s) | 721 |
| Bse1I | ACTGG | 2 cut(s) | 201, 912 |
| BseBI | CCWGG | 1 cut(s) | 395 |
| BseDI | CCNNGG | 4 cut(s) | 361, 627, 648, 885 |
| BseGI | GGATG | 3 cut(s) | 513, 805, 898 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 328, 504, 770, 815, 850 |
| BseMII | CTCAG | 1 cut(s) | 352 |
| BseNI | ACTGG | 2 cut(s) | 201, 912 |
| BseRI | GAGGAG | 1 cut(s) | 644 |
| BseSI | GKGCMC | 1 cut(s) | 46 |
| BseXI | GCAGC | 9 cut(s) | 58, 328, 429, 499, 556, 559, 754, 798, 989 |
| BseYI | CCCAGC | 4 cut(s) | 526, 763, 822, 834 |
| BsgI | GTGCAG | 1 cut(s) | 506 |
| Bsh1236I | CGCG | 5 cut(s) | 14, 226, 260, 363, 956 |
| Bsh1285I | CGRYCG | 2 cut(s) | 950, 954 |
| BshFI | GGCC | 5 cut(s) | 44, 62, 380, 653, 801 |
| BshNI | GGYRCC | 3 cut(s) | 644, 680, 896 |
| BsiEI | CGRYCG | 2 cut(s) | 950, 954 |
| BsiHKAI | GWGCWC | 1 cut(s) | 339 |
| BsiHKCI | CYCGRG | 4 cut(s) | 648, 781, 885, 924 |
| BsiSI | CCGG | 5 cut(s) | 649, 722, 740, 864, 886 |
| BslFI | GGGAC | 3 cut(s) | 297, 719, 805 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 328, 504, 770, 815, 850 |
| BsmAI | GTCTC | 5 cut(s) | 9, 348, 418, 737, 899 |
| BsmBI | CGTCTC | 1 cut(s) | 348 |
| BsmFI | GGGAC | 3 cut(s) | 297, 719, 805 |
| BsmI | GAATGC | 2 cut(s) | 590, 622 |
| BsnI | GGCC | 5 cut(s) | 44, 62, 380, 653, 801 |
| Bso31I | GGTCTC | 1 cut(s) | 899 |
| BsoBI | CYCGRG | 4 cut(s) | 648, 781, 885, 924 |
| Bsp119I | TTCGAA | 1 cut(s) | 987 |
| Bsp120I | GGGCCC | 1 cut(s) | 42 |
| Bsp1286I | GDGCHC | 2 cut(s) | 46, 339 |
| Bsp143I | GATC | 3 cut(s) | 432, 934, 947 |
| BspANI | GGCC | 5 cut(s) | 44, 62, 380, 653, 801 |
| BspCNI | CTCAG | 1 cut(s) | 351 |
| BspFNI | CGCG | 5 cut(s) | 14, 226, 260, 363, 956 |
| BspHI | TCATGA | 1 cut(s) | 150 |
| BspLI | GGNNCC | 8 cut(s) | 43, 44, 646, 682, 820, 821, 898, 931 |
| BspMAI | CTGCAG | 2 cut(s) | 447, 772 |
| BspMI | ACCTGC | 1 cut(s) | 761 |
| BspT104I | TTCGAA | 1 cut(s) | 987 |
| BspT107I | GGYRCC | 3 cut(s) | 644, 680, 896 |
| BspTI | CTTAAG | 1 cut(s) | 611 |
| BspTNI | GGTCTC | 1 cut(s) | 899 |
| BsrBI | CCGCTC | 2 cut(s) | 400, 451 |
| BsrFI | RCCGGY | 1 cut(s) | 721 |
| BsrI | ACTGG | 2 cut(s) | 201, 912 |
| BssAI | RCCGGY | 1 cut(s) | 721 |
| BssECI | CCNNGG | 4 cut(s) | 361, 627, 648, 885 |
| BssMI | GATC | 3 cut(s) | 432, 934, 947 |
| BssNI | GRCGYC | 4 cut(s) | 308, 357, 645, 681 |
| Bst2UI | CCWGG | 1 cut(s) | 395 |
| Bst6I | CTCTTC | 2 cut(s) | 12, 182 |
| BstACI | GRCGYC | 4 cut(s) | 308, 357, 645, 681 |
| BstAFI | CTTAAG | 1 cut(s) | 611 |
| BstBAI | YACGTR | 1 cut(s) | 860 |
| BstBI | TTCGAA | 1 cut(s) | 987 |
| BstC8I | GCNNGC | 9 cut(s) | 46, 84, 108, 191, 368, 643, 723, 759, 943 |
| BstDEI | CTNAG | 2 cut(s) | 338, 462 |
| BstDSI | CCRYGG | 1 cut(s) | 361 |
| BstEII | GGTNACC | 1 cut(s) | 538 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 326 |
| BstF5I | GGATG | 3 cut(s) | 513, 805, 898 |
| BstFNI | CGCG | 5 cut(s) | 14, 226, 260, 363, 956 |
| BstH2I | RGCGCY | 3 cut(s) | 107, 648, 684 |
| BstHHI | GCGC | 6 cut(s) | 106, 228, 260, 647, 683, 958 |
| BstKTI | GATC | 3 cut(s) | 435, 937, 950 |
| BstMAI | GTCTC | 5 cut(s) | 9, 348, 418, 737, 899 |
| BstMBI | GATC | 3 cut(s) | 432, 934, 947 |
| BstMCI | CGRYCG | 2 cut(s) | 950, 954 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 68, 140, 448, 575, 578, 587, 722, 767 |
| BstNI | CCWGG | 1 cut(s) | 395 |
| BstNSI | RCATGY | 1 cut(s) | 413 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 749 |
| BstPI | GGTNACC | 1 cut(s) | 538 |
| BstSCI | CCNGG | 5 cut(s) | 393, 647, 648, 884, 885 |
| BstSFI | CTRYAG | 2 cut(s) | 443, 768 |
| BstSLI | GKGCMC | 1 cut(s) | 46 |
| BstUI | CGCG | 5 cut(s) | 14, 226, 260, 363, 956 |
| BstV1I | GCAGC | 9 cut(s) | 58, 328, 429, 499, 556, 559, 754, 798, 989 |
| BsuRI | GGCC | 5 cut(s) | 44, 62, 380, 653, 801 |
| BtgI | CCRYGG | 1 cut(s) | 361 |
| BtsCI | GGATG | 3 cut(s) | 513, 805, 898 |
| BtsIMutI | CAGTG | 1 cut(s) | 620 |
| BveI | ACCTGC | 1 cut(s) | 761 |
| Cac8I | GCNNGC | 9 cut(s) | 46, 84, 108, 191, 368, 643, 723, 759, 943 |
| CaiI | CAGNNNCTG | 1 cut(s) | 322 |
| CciI | TCATGA | 1 cut(s) | 150 |
| CfoI | GCGC | 6 cut(s) | 106, 228, 260, 647, 683, 958 |
| Cfr10I | RCCGGY | 1 cut(s) | 721 |
| Cfr13I | GGNCC | 7 cut(s) | 42, 43, 61, 651, 800, 819, 930 |
| Cfr42I | CCGCGG | 1 cut(s) | 364 |
| Cfr9I | CCCGGG | 2 cut(s) | 648, 885 |
| CseI | GACGC | 2 cut(s) | 20, 722 |
| Csp6I | GTAC | 3 cut(s) | 564, 774, 897 |
| CviAII | CATG | 2 cut(s) | 151, 410 |
| CviQI | GTAC | 3 cut(s) | 564, 774, 897 |
| DdeI | CTNAG | 2 cut(s) | 338, 462 |
| DinI | GGCGCC | 2 cut(s) | 646, 682 |
| DpnI | GATC | 3 cut(s) | 434, 936, 949 |
| DpnII | GATC | 3 cut(s) | 432, 934, 947 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 817 |
| DriI | GACNNNNNGTC | 1 cut(s) | 912 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 817 |
| EaeI | YGGCCR | 1 cut(s) | 378 |
| Eam1104I | CTCTTC | 2 cut(s) | 12, 182 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 912 |
| EarI | CTCTTC | 2 cut(s) | 12, 182 |
| EciI | GGCGGA | 2 cut(s) | 487, 905 |
| Ecl136II | GAGCTC | 1 cut(s) | 337 |
| Eco24I | GRGCYC | 2 cut(s) | 46, 339 |
| Eco31I | GGTCTC | 1 cut(s) | 899 |
| Eco47I | GGWCC | 2 cut(s) | 819, 930 |
| Eco53kI | GAGCTC | 1 cut(s) | 337 |
| Eco57I | CTGAAG | 2 cut(s) | 238, 576 |
| Eco72I | CACGTG | 1 cut(s) | 860 |
| Eco88I | CYCGRG | 4 cut(s) | 648, 781, 885, 924 |
| Eco91I | GGTNACC | 1 cut(s) | 538 |
| EcoICRI | GAGCTC | 1 cut(s) | 337 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 326 |
| EcoO109I | RGGNCCY | 2 cut(s) | 42, 819 |
| EcoO65I | GGTNACC | 1 cut(s) | 538 |
| EcoRI | GAATTC | 1 cut(s) | 983 |
| EcoRII | CCWGG | 1 cut(s) | 393 |
| EcoT38I | GRGCYC | 2 cut(s) | 46, 339 |
| EgeI | GGCGCC | 2 cut(s) | 646, 682 |
| EheI | GGCGCC | 2 cut(s) | 646, 682 |
| Esp3I | CGTCTC | 1 cut(s) | 348 |
| FaeI | CATG | 2 cut(s) | 154, 413 |
| FaqI | GGGAC | 3 cut(s) | 297, 719, 805 |
| FatI | CATG | 2 cut(s) | 150, 409 |
| FauI | CCCGC | 8 cut(s) | 53, 115, 208, 274, 483, 551, 744, 782 |
| FokI | GGATG | 3 cut(s) | 520, 792, 905 |
| FriOI | GRGCYC | 2 cut(s) | 46, 339 |
| FspBI | CTAG | 1 cut(s) | 122 |
| GlaI | GCGC | 6 cut(s) | 105, 227, 259, 646, 682, 957 |
| GsaI | CCCAGC | 4 cut(s) | 530, 767, 826, 838 |
| GsuI | CTGGAG | 2 cut(s) | 416, 893 |
| HaeII | RGCGCY | 3 cut(s) | 107, 648, 684 |
| HaeIII | GGCC | 5 cut(s) | 44, 62, 380, 653, 801 |
| HapII | CCGG | 5 cut(s) | 649, 722, 740, 864, 886 |
| HgaI | GACGC | 2 cut(s) | 20, 722 |
| HhaI | GCGC | 6 cut(s) | 106, 228, 260, 647, 683, 958 |
| Hin1I | GRCGYC | 4 cut(s) | 308, 357, 645, 681 |
| Hin1II | CATG | 2 cut(s) | 154, 413 |
| Hin6I | GCGC | 6 cut(s) | 104, 226, 258, 645, 681, 956 |
| HinP1I | GCGC | 6 cut(s) | 104, 226, 258, 645, 681, 956 |
| HinfI | GANTC | 4 cut(s) | 2, 125, 494, 829 |
| HpaII | CCGG | 5 cut(s) | 649, 722, 740, 864, 886 |
| HphI | GGTGA | 1 cut(s) | 545 |
| Hpy188I | TCNGA | 6 cut(s) | 54, 353, 810, 850, 918, 934 |
| Hpy188III | TCNNGA | 3 cut(s) | 8, 151, 872 |
| Hpy99I | CGWCG | 5 cut(s) | 235, 310, 313, 814, 850 |
| HpyAV | CCTTC | 6 cut(s) | 52, 152, 262, 551, 670, 809 |
| HpyCH4IV | ACGT | 3 cut(s) | 308, 357, 859 |
| HpyCH4V | TGCA | 5 cut(s) | 143, 445, 487, 620, 770 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 68, 140, 448, 575, 578, 587, 722, 767 |
| HpyF3I | CTNAG | 2 cut(s) | 338, 462 |
| HpySE526I | ACGT | 3 cut(s) | 308, 357, 859 |
| Hsp92I | GRCGYC | 4 cut(s) | 308, 357, 645, 681 |
| Hsp92II | CATG | 2 cut(s) | 154, 413 |
| HspAI | GCGC | 6 cut(s) | 104, 226, 258, 645, 681, 956 |
| KasI | GGCGCC | 2 cut(s) | 644, 680 |
| KflI | GGGWCCC | 1 cut(s) | 819 |
| KpnI | GGTACC | 1 cut(s) | 900 |
| KroI | GCCGGC | 1 cut(s) | 721 |
| KroNI | GCCGGC | 1 cut(s) | 723 |
| KspI | CCGCGG | 1 cut(s) | 364 |
| Kzo9I | GATC | 3 cut(s) | 432, 934, 947 |
| LmnI | GCTCC | 3 cut(s) | 397, 424, 448 |
| Lsp1109I | GCAGC | 9 cut(s) | 58, 328, 429, 499, 556, 559, 754, 798, 989 |
| MaeI | CTAG | 1 cut(s) | 122 |
| MaeII | ACGT | 3 cut(s) | 308, 357, 859 |
| MaeIII | GTNAC | 3 cut(s) | 389, 538, 855 |
| MalI | GATC | 3 cut(s) | 434, 936, 949 |
| MbiI | CCGCTC | 2 cut(s) | 400, 451 |
| MboI | GATC | 3 cut(s) | 432, 934, 947 |
| MboII | GAAGA | 4 cut(s) | 29, 67, 169, 356 |
| MfeI | CAATTG | 1 cut(s) | 237 |
| MhlI | GDGCHC | 2 cut(s) | 46, 339 |
| MlsI | TGGCCA | 1 cut(s) | 380 |
| MluCI | AATT | 2 cut(s) | 237, 983 |
| MluNI | TGGCCA | 1 cut(s) | 380 |
| Mly113I | GGCGCC | 2 cut(s) | 645, 681 |
| MlyI | GAGTC | 4 cut(s) | 11, 119, 503, 823 |
| MmeI | TCCRAC | 4 cut(s) | 402, 828, 833, 941 |
| Mox20I | TGGCCA | 1 cut(s) | 380 |
| MroNI | GCCGGC | 1 cut(s) | 721 |
| MscI | TGGCCA | 1 cut(s) | 380 |
| MseI | TTAA | 1 cut(s) | 612 |
| MslI | CAYNNNNRTG | 1 cut(s) | 482 |
| Msp20I | TGGCCA | 1 cut(s) | 380 |
| MspA1I | CMGCKG | 9 cut(s) | 363, 490, 554, 569, 581, 767, 789, 980, 999 |
| MspCI | CTTAAG | 1 cut(s) | 611 |
| MspI | CCGG | 5 cut(s) | 649, 722, 740, 864, 886 |
| MspR9I | CCNGG | 5 cut(s) | 395, 649, 650, 886, 887 |
| MunI | CAATTG | 1 cut(s) | 237 |
| Mva1269I | GAATGC | 2 cut(s) | 590, 622 |
| MvaI | CCWGG | 1 cut(s) | 395 |
| MvnI | CGCG | 5 cut(s) | 14, 226, 260, 363, 956 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 68, 140, 448, 575, 578, 587, 722, 767 |
| NaeI | GCCGGC | 1 cut(s) | 723 |
| NarI | GGCGCC | 2 cut(s) | 645, 681 |
| NciI | CCSGG | 4 cut(s) | 649, 650, 886, 887 |
| NdeII | GATC | 3 cut(s) | 432, 934, 947 |
| NgoMIV | GCCGGC | 1 cut(s) | 721 |
| NlaIII | CATG | 2 cut(s) | 154, 413 |
| NlaIV | GGNNCC | 8 cut(s) | 43, 44, 646, 682, 820, 821, 898, 931 |
| NmeAIII | GCCGAG | 1 cut(s) | 160 |
| NmuCI | GTSAC | 2 cut(s) | 389, 855 |
| NspI | RCATGY | 1 cut(s) | 413 |
| NspV | TTCGAA | 1 cut(s) | 987 |
| PaeR7I | CTCGAG | 1 cut(s) | 924 |
| PagI | TCATGA | 1 cut(s) | 150 |
| PciI | ACATGT | 1 cut(s) | 409 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 297 |
| PctI | GAATGC | 2 cut(s) | 590, 622 |
| PdiI | GCCGGC | 1 cut(s) | 723 |
| PflFI | GACNNNGTC | 2 cut(s) | 692, 844 |
| Ple19I | CGATCG | 1 cut(s) | 950 |
| PleI | GAGTC | 4 cut(s) | 10, 119, 502, 823 |
| PluTI | GGCGCC | 2 cut(s) | 648, 684 |
| PmaCI | CACGTG | 1 cut(s) | 860 |
| PmlI | CACGTG | 1 cut(s) | 860 |
| PpsI | GAGTC | 4 cut(s) | 10, 119, 502, 823 |
| Ppu21I | YACGTR | 1 cut(s) | 860 |
| PpuMI | RGGWCCY | 1 cut(s) | 819 |
| PscI | ACATGT | 1 cut(s) | 409 |
| PshAI | GACNNNNGTC | 1 cut(s) | 749 |
| Psp124BI | GAGCTC | 1 cut(s) | 339 |
| Psp5II | RGGWCCY | 1 cut(s) | 819 |
| Psp6I | CCWGG | 1 cut(s) | 393 |
| PspCI | CACGTG | 1 cut(s) | 860 |
| PspEI | GGTNACC | 1 cut(s) | 538 |
| PspFI | CCCAGC | 4 cut(s) | 526, 763, 822, 834 |
| PspGI | CCWGG | 1 cut(s) | 393 |
| PspN4I | GGNNCC | 8 cut(s) | 43, 44, 646, 682, 820, 821, 898, 931 |
| PspOMI | GGGCCC | 1 cut(s) | 42 |
| PspPI | GGNCC | 7 cut(s) | 42, 43, 61, 651, 800, 819, 930 |
| PspPPI | RGGWCCY | 1 cut(s) | 819 |
| PspXI | VCTCGAGB | 1 cut(s) | 924 |
| PstI | CTGCAG | 2 cut(s) | 447, 772 |
| PstNI | CAGNNNCTG | 1 cut(s) | 322 |
| PsyI | GACNNNGTC | 2 cut(s) | 692, 844 |
| PvuI | CGATCG | 1 cut(s) | 950 |
| PvuII | CAGCTG | 2 cut(s) | 554, 767 |
| RsaI | GTAC | 3 cut(s) | 565, 775, 898 |
| RsaNI | GTAC | 3 cut(s) | 564, 774, 897 |
| RseI | CAYNNNNRTG | 1 cut(s) | 482 |
| SacI | GAGCTC | 1 cut(s) | 339 |
| SacII | CCGCGG | 1 cut(s) | 364 |
| SaqAI | TTAA | 1 cut(s) | 612 |
| Sau3AI | GATC | 3 cut(s) | 432, 934, 947 |
| Sau96I | GGNCC | 7 cut(s) | 42, 43, 61, 651, 800, 819, 930 |
| SchI | GAGTC | 4 cut(s) | 11, 119, 503, 823 |
| ScrFI | CCNGG | 5 cut(s) | 395, 649, 650, 886, 887 |
| SduI | GDGCHC | 2 cut(s) | 46, 339 |
| SfcI | CTRYAG | 2 cut(s) | 443, 768 |
| SfoI | GGCGCC | 2 cut(s) | 646, 682 |
| Sfr274I | CTCGAG | 1 cut(s) | 924 |
| Sfr303I | CCGCGG | 1 cut(s) | 364 |
| SfuI | TTCGAA | 1 cut(s) | 987 |
| SgrBI | CCGCGG | 1 cut(s) | 364 |
| SinI | GGWCC | 2 cut(s) | 819, 930 |
| SlaI | CTCGAG | 1 cut(s) | 924 |
| SmaI | CCCGGG | 2 cut(s) | 650, 887 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 482 |
| SmlI | CTYRAG | 2 cut(s) | 611, 924 |
| SmoI | CTYRAG | 2 cut(s) | 611, 924 |
| SrfI | GCCCGGGC | 1 cut(s) | 650 |
| Sse9I | AATT | 2 cut(s) | 237, 983 |
| SspDI | GGCGCC | 2 cut(s) | 644, 680 |
| SspMI | CTAG | 1 cut(s) | 122 |
| SstI | GAGCTC | 1 cut(s) | 339 |
| StyD4I | CCNGG | 5 cut(s) | 393, 647, 648, 884, 885 |
| TaiI | ACGT | 3 cut(s) | 311, 360, 862 |
| TaqI | TCGA | 3 cut(s) | 311, 925, 987 |
| TaqII | GACCGA | 2 cut(s) | 641, 940 |
| TasI | AATT | 2 cut(s) | 237, 983 |
| TauI | GCSGC | 9 cut(s) | 89, 263, 366, 461, 526, 578, 581, 961, 964 |
| Tru1I | TTAA | 1 cut(s) | 612 |
| Tru9I | TTAA | 1 cut(s) | 612 |
| TscAI | CASTG | 1 cut(s) | 627 |
| TseFI | GTSAC | 2 cut(s) | 389, 855 |
| TseI | GCWGC | 9 cut(s) | 71, 316, 442, 487, 569, 572, 767, 786, 977 |
| Tsp45I | GTSAC | 2 cut(s) | 389, 855 |
| TspDTI | ATGAA | 3 cut(s) | 139, 420, 533 |
| TspGWI | ACGGA | 1 cut(s) | 827 |
| TspMI | CCCGGG | 2 cut(s) | 648, 885 |
| TspRI | CASTG | 1 cut(s) | 627 |
| Tth111I | GACNNNGTC | 2 cut(s) | 692, 844 |
| Vha464I | CTTAAG | 1 cut(s) | 611 |
| VpaK11BI | GGWCC | 2 cut(s) | 819, 930 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 326 |
| XapI | RAATTY | 1 cut(s) | 983 |
| XceI | RCATGY | 1 cut(s) | 413 |
| XhoI | CTCGAG | 1 cut(s) | 924 |
| XmaI | CCCGGG | 2 cut(s) | 648, 885 |
| XspI | CTAG | 1 cut(s) | 122 |
| ZraI | GACGTC | 2 cut(s) | 309, 358 |