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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 368, 507, 584 |
| AccBSI | CCGCTC | 2 cut(s) | 10, 139 |
| AccII | CGCG | 2 cut(s) | 51, 644 |
| AclWI | GGATC | 1 cut(s) | 87 |
| AcoI | YGGCCR | 3 cut(s) | 18, 66, 198 |
| AcvI | CACGTG | 1 cut(s) | 548 |
| AcyI | GRCGYC | 2 cut(s) | 45, 389 |
| AfaI | GTAC | 2 cut(s) | 15, 463 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 75, 192, 458, 503, 538 |
| AflIII | ACRYGT | 2 cut(s) | 97, 351 |
| AgsI | TTSAA | 5 cut(s) | 106, 275, 283, 358, 659 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 600 |
| AjiI | CACGTC | 2 cut(s) | 100, 403 |
| AluBI | AGCT | 5 cut(s) | 58, 163, 242, 455, 653 |
| AluI | AGCT | 5 cut(s) | 58, 163, 242, 455, 653 |
| Alw21I | GWGCWC | 1 cut(s) | 254 |
| Alw26I | GTCTC | 2 cut(s) | 425, 587 |
| AlwI | GGATC | 1 cut(s) | 87 |
| Ama87I | CYCGRG | 3 cut(s) | 336, 573, 612 |
| AoxI | GGCC | 8 cut(s) | 3, 18, 66, 198, 333, 487, 576, 669 |
| ApaI | GGGCCC | 1 cut(s) | 337 |
| ApeKI | GCWGC | 7 cut(s) | 127, 130, 175, 257, 266, 474, 662 |
| AspLEI | GCGC | 2 cut(s) | 127, 646 |
| AspS9I | GGNCC | 5 cut(s) | 333, 334, 488, 576, 618 |
| AsuC2I | CCSGG | 5 cut(s) | 337, 338, 425, 574, 575 |
| AsuHPI | GGTGA | 1 cut(s) | 233 |
| AvaI | CYCGRG | 3 cut(s) | 336, 573, 612 |
| AvaII | GGWCC | 1 cut(s) | 618 |
| BaeGI | GKGCMC | 1 cut(s) | 337 |
| BalI | TGGCCA | 1 cut(s) | 20 |
| BanI | GGYRCC | 3 cut(s) | 368, 507, 584 |
| BanII | GRGCYC | 1 cut(s) | 337 |
| BbrPI | CACGTG | 1 cut(s) | 548 |
| BbsI | GAAGAC | 2 cut(s) | 94, 311 |
| Bbv12I | GWGCWC | 1 cut(s) | 254 |
| BbvCI | CCTCAGC | 2 cut(s) | 243, 522 |
| BbvI | GCAGC | 7 cut(s) | 114, 117, 187, 244, 253, 486, 674 |
| BccI | CCATC | 3 cut(s) | 77, 115, 190 |
| BceAI | ACGGC | 1 cut(s) | 598 |
| BcnI | CCSGG | 5 cut(s) | 337, 338, 425, 574, 575 |
| BcoDI | GTCTC | 2 cut(s) | 425, 587 |
| BfaI | CTAG | 1 cut(s) | 560 |
| BfmI | CTRYAG | 2 cut(s) | 131, 456 |
| BfoI | RGCGCY | 1 cut(s) | 128 |
| Bme1390I | CCNGG | 5 cut(s) | 337, 338, 425, 574, 575 |
| Bme18I | GGWCC | 1 cut(s) | 618 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 600 |
| BmeT110I | CYCGRG | 3 cut(s) | 336, 573, 612 |
| BmgBI | CACGTC | 2 cut(s) | 100, 403 |
| BmgT120I | GGNCC | 5 cut(s) | 333, 334, 488, 576, 618 |
| BmiI | GGNNCC | 6 cut(s) | 334, 335, 370, 509, 586, 619 |
| BmrFI | CCNGG | 5 cut(s) | 337, 338, 425, 574, 575 |
| BmrI | ACTGGG | 1 cut(s) | 594 |
| BmsI | GCATC | 1 cut(s) | 52 |
| BmuI | ACTGGG | 1 cut(s) | 594 |
| BoxI | GACNNNNGTC | 1 cut(s) | 437 |
| BpiI | GAAGAC | 2 cut(s) | 94, 311 |
| BpmI | CTGGAG | 2 cut(s) | 104, 633 |
| Bpu10I | CCTNAGC | 2 cut(s) | 243, 522 |
| BpuMI | CCSGG | 5 cut(s) | 337, 338, 425, 574, 575 |
| BsaAI | YACGTR | 1 cut(s) | 548 |
| BsaHI | GRCGYC | 2 cut(s) | 45, 389 |
| BsaI | GGTCTC | 1 cut(s) | 587 |
| BsaJI | CCNNGG | 5 cut(s) | 21, 49, 336, 573, 613 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 75, 192, 458, 503, 538 |
| Bse118I | RCCGGY | 1 cut(s) | 409 |
| Bse1I | ACTGG | 2 cut(s) | 21, 600 |
| BseDI | CCNNGG | 5 cut(s) | 21, 49, 336, 573, 613 |
| BseGI | GGATG | 3 cut(s) | 69, 201, 493 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 75, 192, 458, 503, 538 |
| BseMII | CTCAG | 3 cut(s) | 227, 234, 536 |
| BseNI | ACTGG | 2 cut(s) | 21, 600 |
| BseRI | GAGGAG | 1 cut(s) | 510 |
| BseSI | GKGCMC | 1 cut(s) | 337 |
| BseXI | GCAGC | 7 cut(s) | 114, 117, 187, 244, 253, 486, 674 |
| BseYI | CCCAGC | 2 cut(s) | 214, 451 |
| BsgI | GTGCAG | 1 cut(s) | 194 |
| Bsh1236I | CGCG | 2 cut(s) | 51, 644 |
| Bsh1285I | CGRYCG | 3 cut(s) | 414, 638, 642 |
| BshFI | GGCC | 8 cut(s) | 5, 20, 68, 200, 335, 489, 578, 671 |
| BshNI | GGYRCC | 3 cut(s) | 368, 507, 584 |
| BsiEI | CGRYCG | 3 cut(s) | 414, 638, 642 |
| BsiHKAI | GWGCWC | 1 cut(s) | 254 |
| BsiHKCI | CYCGRG | 3 cut(s) | 336, 573, 612 |
| BsiSI | CCGG | 6 cut(s) | 73, 337, 410, 425, 552, 574 |
| BslFI | GGGAC | 1 cut(s) | 407 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 75, 192, 458, 503, 538 |
| BsmAI | GTCTC | 2 cut(s) | 425, 587 |
| BsmFI | GGGAC | 1 cut(s) | 407 |
| BsmI | GAATGC | 1 cut(s) | 278 |
| BsnI | GGCC | 8 cut(s) | 5, 20, 68, 200, 335, 489, 578, 671 |
| Bso31I | GGTCTC | 1 cut(s) | 587 |
| BsoBI | CYCGRG | 3 cut(s) | 336, 573, 612 |
| Bsp120I | GGGCCC | 1 cut(s) | 333 |
| Bsp1286I | GDGCHC | 2 cut(s) | 254, 337 |
| Bsp143I | GATC | 4 cut(s) | 79, 312, 622, 635 |
| BspANI | GGCC | 8 cut(s) | 5, 20, 68, 200, 335, 489, 578, 671 |
| BspCNI | CTCAG | 3 cut(s) | 228, 235, 535 |
| BspFNI | CGCG | 2 cut(s) | 51, 644 |
| BspLI | GGNNCC | 6 cut(s) | 334, 335, 370, 509, 586, 619 |
| BspMAI | CTGCAG | 1 cut(s) | 135 |
| BspPI | GGATC | 1 cut(s) | 87 |
| BspT107I | GGYRCC | 3 cut(s) | 368, 507, 584 |
| BspTNI | GGTCTC | 1 cut(s) | 587 |
| BsrBI | CCGCTC | 2 cut(s) | 10, 139 |
| BsrFI | RCCGGY | 1 cut(s) | 409 |
| BsrI | ACTGG | 2 cut(s) | 21, 600 |
| BssAI | RCCGGY | 1 cut(s) | 409 |
| BssECI | CCNNGG | 5 cut(s) | 21, 49, 336, 573, 613 |
| BssMI | GATC | 4 cut(s) | 79, 312, 622, 635 |
| BssNI | GRCGYC | 2 cut(s) | 45, 389 |
| BssT1I | CCWWGG | 1 cut(s) | 21 |
| BstACI | GRCGYC | 2 cut(s) | 45, 389 |
| BstBAI | YACGTR | 1 cut(s) | 548 |
| BstC8I | GCNNGC | 5 cut(s) | 49, 56, 447, 512, 631 |
| BstDEI | CTNAG | 3 cut(s) | 236, 243, 522 |
| BstDSI | CCRYGG | 1 cut(s) | 49 |
| BstEII | GGTNACC | 1 cut(s) | 226 |
| BstF5I | GGATG | 3 cut(s) | 69, 201, 493 |
| BstFNI | CGCG | 2 cut(s) | 51, 644 |
| BstH2I | RGCGCY | 1 cut(s) | 128 |
| BstHHI | GCGC | 2 cut(s) | 127, 646 |
| BstKTI | GATC | 4 cut(s) | 82, 315, 625, 638 |
| BstMAI | GTCTC | 2 cut(s) | 425, 587 |
| BstMBI | GATC | 4 cut(s) | 79, 312, 622, 635 |
| BstMCI | CGRYCG | 3 cut(s) | 414, 638, 642 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 136, 263, 266, 275, 403, 650, 659, 668 |
| BstNSI | RCATGY | 1 cut(s) | 355 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 437 |
| BstPI | GGTNACC | 1 cut(s) | 226 |
| BstSCI | CCNGG | 5 cut(s) | 335, 336, 423, 572, 573 |
| BstSFI | CTRYAG | 2 cut(s) | 131, 456 |
| BstSLI | GKGCMC | 1 cut(s) | 337 |
| BstUI | CGCG | 2 cut(s) | 51, 644 |
| BstV1I | GCAGC | 7 cut(s) | 114, 117, 187, 244, 253, 486, 674 |
| BstV2I | GAAGAC | 2 cut(s) | 94, 311 |
| BstX2I | RGATCY | 1 cut(s) | 79 |
| BstYI | RGATCY | 1 cut(s) | 79 |
| BsuRI | GGCC | 8 cut(s) | 5, 20, 68, 200, 335, 489, 578, 671 |
| BtgI | CCRYGG | 1 cut(s) | 49 |
| BtrI | CACGTC | 2 cut(s) | 100, 403 |
| BtsCI | GGATG | 3 cut(s) | 69, 201, 493 |
| Cac8I | GCNNGC | 5 cut(s) | 49, 56, 447, 512, 631 |
| CfoI | GCGC | 2 cut(s) | 127, 646 |
| Cfr10I | RCCGGY | 1 cut(s) | 409 |
| Cfr13I | GGNCC | 5 cut(s) | 333, 334, 488, 576, 618 |
| Cfr42I | CCGCGG | 1 cut(s) | 52 |
| Cfr9I | CCCGGG | 2 cut(s) | 336, 573 |
| CseI | GACGC | 2 cut(s) | 53, 378 |
| Csp6I | GTAC | 2 cut(s) | 14, 462 |
| CviAII | CATG | 1 cut(s) | 352 |
| CviQI | GTAC | 2 cut(s) | 14, 462 |
| DdeI | CTNAG | 3 cut(s) | 236, 243, 522 |
| DpnI | GATC | 4 cut(s) | 81, 314, 624, 637 |
| DpnII | GATC | 4 cut(s) | 79, 312, 622, 635 |
| DriI | GACNNNNNGTC | 1 cut(s) | 600 |
| EaeI | YGGCCR | 3 cut(s) | 18, 66, 198 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 600 |
| EciI | GGCGGA | 4 cut(s) | 41, 175, 308, 443 |
| Eco130I | CCWWGG | 1 cut(s) | 21 |
| Eco24I | GRGCYC | 1 cut(s) | 337 |
| Eco31I | GGTCTC | 1 cut(s) | 587 |
| Eco47I | GGWCC | 1 cut(s) | 618 |
| Eco72I | CACGTG | 1 cut(s) | 548 |
| Eco88I | CYCGRG | 3 cut(s) | 336, 573, 612 |
| Eco91I | GGTNACC | 1 cut(s) | 226 |
| EcoO109I | RGGNCCY | 1 cut(s) | 333 |
| EcoO65I | GGTNACC | 1 cut(s) | 226 |
| EcoT14I | CCWWGG | 1 cut(s) | 21 |
| EcoT38I | GRGCYC | 1 cut(s) | 337 |
| ErhI | CCWWGG | 1 cut(s) | 21 |
| FaeI | CATG | 1 cut(s) | 355 |
| FaiI | YATR | 6 cut(s) | 39, 170, 300, 347, 353, 590 |
| FaqI | GGGAC | 1 cut(s) | 407 |
| FatI | CATG | 1 cut(s) | 351 |
| FauI | CCCGC | 7 cut(s) | 3, 56, 69, 132, 171, 239, 470 |
| FokI | GGATG | 3 cut(s) | 56, 208, 480 |
| FriOI | GRGCYC | 1 cut(s) | 337 |
| FspBI | CTAG | 1 cut(s) | 560 |
| GlaI | GCGC | 2 cut(s) | 126, 645 |
| GsaI | CCCAGC | 2 cut(s) | 218, 455 |
| GsuI | CTGGAG | 2 cut(s) | 104, 633 |
| HaeII | RGCGCY | 1 cut(s) | 128 |
| HaeIII | GGCC | 8 cut(s) | 5, 20, 68, 200, 335, 489, 578, 671 |
| HapII | CCGG | 6 cut(s) | 73, 337, 410, 425, 552, 574 |
| HgaI | GACGC | 2 cut(s) | 53, 378 |
| HhaI | GCGC | 2 cut(s) | 127, 646 |
| Hin1I | GRCGYC | 2 cut(s) | 45, 389 |
| Hin1II | CATG | 1 cut(s) | 355 |
| Hin6I | GCGC | 2 cut(s) | 125, 644 |
| HinP1I | GCGC | 2 cut(s) | 125, 644 |
| HindIII | AAGCTT | 1 cut(s) | 56 |
| HinfI | GANTC | 1 cut(s) | 182 |
| HpaII | CCGG | 6 cut(s) | 73, 337, 410, 425, 552, 574 |
| HphI | GGTGA | 1 cut(s) | 233 |
| Hpy188I | TCNGA | 3 cut(s) | 538, 606, 622 |
| Hpy188III | TCNNGA | 2 cut(s) | 83, 560 |
| Hpy99I | CGWCG | 2 cut(s) | 538, 584 |
| HpyAV | CCTTC | 3 cut(s) | 358, 379, 497 |
| HpyCH4IV | ACGT | 3 cut(s) | 99, 402, 547 |
| HpyCH4V | TGCA | 2 cut(s) | 133, 175 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 136, 263, 266, 275, 403, 650, 659, 668 |
| HpyF3I | CTNAG | 3 cut(s) | 236, 243, 522 |
| HpySE526I | ACGT | 3 cut(s) | 99, 402, 547 |
| Hsp92I | GRCGYC | 2 cut(s) | 45, 389 |
| Hsp92II | CATG | 1 cut(s) | 355 |
| HspAI | GCGC | 2 cut(s) | 125, 644 |
| KspI | CCGCGG | 1 cut(s) | 52 |
| Kzo9I | GATC | 4 cut(s) | 79, 312, 622, 635 |
| LmnI | GCTCC | 3 cut(s) | 112, 136, 249 |
| Lsp1109I | GCAGC | 7 cut(s) | 114, 117, 187, 244, 253, 486, 674 |
| LweI | GCATC | 1 cut(s) | 52 |
| MaeI | CTAG | 1 cut(s) | 560 |
| MaeII | ACGT | 3 cut(s) | 99, 402, 547 |
| MaeIII | GTNAC | 3 cut(s) | 226, 390, 543 |
| MalI | GATC | 4 cut(s) | 81, 314, 624, 637 |
| MbiI | CCGCTC | 2 cut(s) | 10, 139 |
| MboI | GATC | 4 cut(s) | 79, 312, 622, 635 |
| MboII | GAAGA | 3 cut(s) | 94, 169, 316 |
| MflI | RGATCY | 1 cut(s) | 79 |
| MhlI | GDGCHC | 2 cut(s) | 254, 337 |
| MlsI | TGGCCA | 1 cut(s) | 20 |
| MluCI | AATT | 1 cut(s) | 204 |
| MluNI | TGGCCA | 1 cut(s) | 20 |
| MlyI | GAGTC | 1 cut(s) | 191 |
| MmeI | TCCRAC | 3 cut(s) | 90, 516, 521 |
| MnlI | CCTC | 9 cut(s) | 81, 217, 238, 531, 532, 556, 608, 657, 661 |
| Mox20I | TGGCCA | 1 cut(s) | 20 |
| MscI | TGGCCA | 1 cut(s) | 20 |
| MseI | TTAA | 1 cut(s) | 207 |
| MslI | CAYNNNNRTG | 2 cut(s) | 170, 350 |
| Msp20I | TGGCCA | 1 cut(s) | 20 |
| MspA1I | CMGCKG | 7 cut(s) | 51, 178, 257, 455, 477, 653, 684 |
| MspI | CCGG | 6 cut(s) | 73, 337, 410, 425, 552, 574 |
| MspR9I | CCNGG | 5 cut(s) | 337, 338, 425, 574, 575 |
| Mva1269I | GAATGC | 1 cut(s) | 278 |
| MvnI | CGCG | 2 cut(s) | 51, 644 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 136, 263, 266, 275, 403, 650, 659, 668 |
| NciI | CCSGG | 5 cut(s) | 337, 338, 425, 574, 575 |
| NdeII | GATC | 4 cut(s) | 79, 312, 622, 635 |
| NlaIII | CATG | 1 cut(s) | 355 |
| NlaIV | GGNNCC | 6 cut(s) | 334, 335, 370, 509, 586, 619 |
| NmeAIII | GCCGAG | 1 cut(s) | 31 |
| NmuCI | GTSAC | 2 cut(s) | 390, 543 |
| NspI | RCATGY | 1 cut(s) | 355 |
| PciI | ACATGT | 1 cut(s) | 351 |
| PctI | GAATGC | 1 cut(s) | 278 |
| PflFI | GACNNNGTC | 1 cut(s) | 532 |
| Ple19I | CGATCG | 1 cut(s) | 638 |
| PleI | GAGTC | 1 cut(s) | 190 |
| PmaCI | CACGTG | 1 cut(s) | 548 |
| PmlI | CACGTG | 1 cut(s) | 548 |
| PpsI | GAGTC | 1 cut(s) | 190 |
| Ppu21I | YACGTR | 1 cut(s) | 548 |
| PscI | ACATGT | 1 cut(s) | 351 |
| PshAI | GACNNNNGTC | 1 cut(s) | 437 |
| PspCI | CACGTG | 1 cut(s) | 548 |
| PspEI | GGTNACC | 1 cut(s) | 226 |
| PspFI | CCCAGC | 2 cut(s) | 214, 451 |
| PspN4I | GGNNCC | 6 cut(s) | 334, 335, 370, 509, 586, 619 |
| PspOMI | GGGCCC | 1 cut(s) | 333 |
| PspPI | GGNCC | 5 cut(s) | 333, 334, 488, 576, 618 |
| PstI | CTGCAG | 1 cut(s) | 135 |
| PsuI | RGATCY | 1 cut(s) | 79 |
| PsyI | GACNNNGTC | 1 cut(s) | 532 |
| PvuI | CGATCG | 1 cut(s) | 638 |
| PvuII | CAGCTG | 2 cut(s) | 455, 653 |
| RsaI | GTAC | 2 cut(s) | 15, 463 |
| RsaNI | GTAC | 2 cut(s) | 14, 462 |
| RseI | CAYNNNNRTG | 2 cut(s) | 170, 350 |
| SacII | CCGCGG | 1 cut(s) | 52 |
| SaqAI | TTAA | 1 cut(s) | 207 |
| Sau3AI | GATC | 4 cut(s) | 79, 312, 622, 635 |
| Sau96I | GGNCC | 5 cut(s) | 333, 334, 488, 576, 618 |
| SchI | GAGTC | 1 cut(s) | 191 |
| ScrFI | CCNGG | 5 cut(s) | 337, 338, 425, 574, 575 |
| SduI | GDGCHC | 2 cut(s) | 254, 337 |
| SfaNI | GCATC | 1 cut(s) | 52 |
| SfcI | CTRYAG | 2 cut(s) | 131, 456 |
| Sfr303I | CCGCGG | 1 cut(s) | 52 |
| SgrBI | CCGCGG | 1 cut(s) | 52 |
| SinI | GGWCC | 1 cut(s) | 618 |
| SmaI | CCCGGG | 2 cut(s) | 338, 575 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 170, 350 |
| SrfI | GCCCGGGC | 1 cut(s) | 338 |
| Sse9I | AATT | 1 cut(s) | 204 |
| SspMI | CTAG | 1 cut(s) | 560 |
| StyD4I | CCNGG | 5 cut(s) | 335, 336, 423, 572, 573 |
| StyI | CCWWGG | 1 cut(s) | 21 |
| TaiI | ACGT | 3 cut(s) | 102, 405, 550 |
| TaqI | TCGA | 2 cut(s) | 315, 414 |
| TaqII | GACCGA | 1 cut(s) | 628 |
| TasI | AATT | 1 cut(s) | 204 |
| TauI | GCSGC | 6 cut(s) | 54, 68, 149, 214, 323, 409 |
| Tru1I | TTAA | 1 cut(s) | 207 |
| Tru9I | TTAA | 1 cut(s) | 207 |
| TseFI | GTSAC | 2 cut(s) | 390, 543 |
| TseI | GCWGC | 7 cut(s) | 127, 130, 175, 257, 266, 474, 662 |
| Tsp45I | GTSAC | 2 cut(s) | 390, 543 |
| TspDTI | ATGAA | 1 cut(s) | 108 |
| TspGWI | ACGGA | 1 cut(s) | 515 |
| TspMI | CCCGGG | 2 cut(s) | 336, 573 |
| Tth111I | GACNNNGTC | 1 cut(s) | 532 |
| VpaK11BI | GGWCC | 1 cut(s) | 618 |
| XbaI | TCTAGA | 1 cut(s) | 559 |
| XceI | RCATGY | 1 cut(s) | 355 |
| XmaI | CCCGGG | 2 cut(s) | 336, 573 |
| XspI | CTAG | 1 cut(s) | 560 |