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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 767, 860 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 777 |
| AccBSI | CCGCTC | 5 cut(s) | 235, 472, 538, 550, 826 |
| AccI | GTMKAC | 1 cut(s) | 75 |
| AccII | CGCG | 2 cut(s) | 513, 830 |
| AclWI | GGATC | 2 cut(s) | 606, 625 |
| AcsI | RAATTY | 1 cut(s) | 215 |
| AcuI | CTGAAG | 3 cut(s) | 614, 620, 776 |
| AcyI | GRCGYC | 1 cut(s) | 768 |
| AfaI | GTAC | 3 cut(s) | 42, 114, 698 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 394, 537, 595, 640, 777 |
| AjiI | CACGTC | 2 cut(s) | 544, 562 |
| AjnI | CCWGG | 3 cut(s) | 69, 426, 566 |
| AluBI | AGCT | 8 cut(s) | 92, 326, 403, 436, 503, 520, 653, 751 |
| AluI | AGCT | 8 cut(s) | 92, 326, 403, 436, 503, 520, 653, 751 |
| Alw26I | GTCTC | 4 cut(s) | 95, 146, 428, 568 |
| AlwI | GGATC | 2 cut(s) | 606, 625 |
| Ama87I | CYCGRG | 1 cut(s) | 387 |
| AoxI | GGCC | 4 cut(s) | 167, 329, 444, 726 |
| ApeKI | GCWGC | 7 cut(s) | 89, 371, 382, 400, 500, 650, 751 |
| ApoI | RAATTY | 1 cut(s) | 215 |
| AspLEI | GCGC | 3 cut(s) | 477, 770, 832 |
| AsuC2I | CCSGG | 2 cut(s) | 388, 389 |
| AsuHPI | GGTGA | 4 cut(s) | 308, 520, 628, 679 |
| AvaI | CYCGRG | 1 cut(s) | 387 |
| BaeGI | GKGCMC | 1 cut(s) | 865 |
| BanI | GGYRCC | 2 cut(s) | 767, 860 |
| BanII | GRGCYC | 1 cut(s) | 10 |
| BbvCI | CCTCAGC | 1 cut(s) | 663 |
| BbvI | GCAGC | 7 cut(s) | 101, 383, 394, 412, 512, 662, 738 |
| BccI | CCATC | 1 cut(s) | 801 |
| BceAI | ACGGC | 1 cut(s) | 188 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 182, 216 |
| BciT130I | CCWGG | 3 cut(s) | 71, 428, 568 |
| BclI | TGATCA | 2 cut(s) | 309, 556 |
| BcnI | CCSGG | 2 cut(s) | 388, 389 |
| BcoDI | GTCTC | 4 cut(s) | 95, 146, 428, 568 |
| BfaI | CTAG | 3 cut(s) | 165, 572, 937 |
| BfmI | CTRYAG | 1 cut(s) | 648 |
| BfoI | RGCGCY | 1 cut(s) | 771 |
| Bme1390I | CCNGG | 5 cut(s) | 71, 388, 389, 428, 568 |
| BmeT110I | CYCGRG | 1 cut(s) | 387 |
| BmgBI | CACGTC | 2 cut(s) | 544, 562 |
| BmiI | GGNNCC | 4 cut(s) | 7, 228, 769, 862 |
| BmrFI | CCNGG | 5 cut(s) | 71, 388, 389, 428, 568 |
| BmrI | ACTGGG | 1 cut(s) | 787 |
| BmsI | GCATC | 3 cut(s) | 76, 487, 496 |
| BmuI | ACTGGG | 1 cut(s) | 787 |
| BpmI | CTGGAG | 4 cut(s) | 302, 410, 550, 698 |
| Bpu10I | CCTNAGC | 2 cut(s) | 231, 663 |
| BpuEI | CTTGAG | 1 cut(s) | 389 |
| BpuMI | CCSGG | 2 cut(s) | 388, 389 |
| BsaHI | GRCGYC | 1 cut(s) | 768 |
| BsaI | GGTCTC | 1 cut(s) | 428 |
| BsaJI | CCNNGG | 8 cut(s) | 347, 386, 387, 427, 447, 483, 511, 849 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 907, 937 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 394, 537, 595, 640, 777 |
| Bse118I | RCCGGY | 1 cut(s) | 728 |
| Bse1I | ACTGG | 1 cut(s) | 782 |
| BseBI | CCWGG | 3 cut(s) | 71, 428, 568 |
| BseDI | CCNNGG | 8 cut(s) | 347, 386, 387, 427, 447, 483, 511, 849 |
| BseGI | GGATG | 3 cut(s) | 88, 688, 793 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 394, 537, 595, 640, 777 |
| BseMII | CTCAG | 5 cut(s) | 222, 654, 705, 707, 923 |
| BseNI | ACTGG | 1 cut(s) | 782 |
| BseRI | GAGGAG | 3 cut(s) | 242, 425, 482 |
| BseSI | GKGCMC | 1 cut(s) | 865 |
| BseXI | GCAGC | 7 cut(s) | 101, 383, 394, 412, 512, 662, 738 |
| BsgI | GTGCAG | 1 cut(s) | 197 |
| Bsh1236I | CGCG | 2 cut(s) | 513, 830 |
| BshFI | GGCC | 4 cut(s) | 169, 331, 446, 728 |
| BshNI | GGYRCC | 2 cut(s) | 767, 860 |
| BsiHKCI | CYCGRG | 1 cut(s) | 387 |
| BsiSI | CCGG | 4 cut(s) | 170, 388, 729, 896 |
| BslFI | GGGAC | 3 cut(s) | 72, 554, 775 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 394, 537, 595, 640, 777 |
| BsmAI | GTCTC | 4 cut(s) | 95, 146, 428, 568 |
| BsmBI | CGTCTC | 1 cut(s) | 568 |
| BsmFI | GGGAC | 3 cut(s) | 72, 554, 775 |
| BsnI | GGCC | 4 cut(s) | 169, 331, 446, 728 |
| Bso31I | GGTCTC | 1 cut(s) | 428 |
| BsoBI | CYCGRG | 1 cut(s) | 387 |
| Bsp1286I | GDGCHC | 2 cut(s) | 10, 865 |
| Bsp143I | GATC | 6 cut(s) | 187, 309, 414, 556, 598, 630 |
| BspANI | GGCC | 4 cut(s) | 169, 331, 446, 728 |
| BspCNI | CTCAG | 5 cut(s) | 223, 655, 706, 706, 922 |
| BspFNI | CGCG | 2 cut(s) | 513, 830 |
| BspLI | GGNNCC | 4 cut(s) | 7, 228, 769, 862 |
| BspMAI | CTGCAG | 1 cut(s) | 652 |
| BspPI | GGATC | 2 cut(s) | 606, 625 |
| BspT107I | GGYRCC | 2 cut(s) | 767, 860 |
| BspTNI | GGTCTC | 1 cut(s) | 428 |
| BsrBI | CCGCTC | 5 cut(s) | 235, 472, 538, 550, 826 |
| BsrFI | RCCGGY | 1 cut(s) | 728 |
| BsrI | ACTGG | 1 cut(s) | 782 |
| BssAI | RCCGGY | 1 cut(s) | 728 |
| BssECI | CCNNGG | 8 cut(s) | 347, 386, 387, 427, 447, 483, 511, 849 |
| BssMI | GATC | 6 cut(s) | 187, 309, 414, 556, 598, 630 |
| BssNI | GRCGYC | 1 cut(s) | 768 |
| BssT1I | CCWWGG | 3 cut(s) | 447, 483, 849 |
| Bst2UI | CCWGG | 3 cut(s) | 71, 428, 568 |
| Bst4CI | ACNGT | 2 cut(s) | 157, 532 |
| Bst6I | CTCTTC | 1 cut(s) | 665 |
| BstACI | GRCGYC | 1 cut(s) | 768 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 506 |
| BstC8I | GCNNGC | 6 cut(s) | 119, 278, 438, 511, 518, 828 |
| BstDEI | CTNAG | 5 cut(s) | 231, 663, 693, 714, 909 |
| BstDSI | CCRYGG | 2 cut(s) | 347, 511 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 593 |
| BstF5I | GGATG | 3 cut(s) | 88, 688, 793 |
| BstFNI | CGCG | 2 cut(s) | 513, 830 |
| BstH2I | RGCGCY | 1 cut(s) | 771 |
| BstHHI | GCGC | 3 cut(s) | 477, 770, 832 |
| BstKTI | GATC | 6 cut(s) | 190, 312, 417, 559, 601, 633 |
| BstMAI | GTCTC | 4 cut(s) | 95, 146, 428, 568 |
| BstMBI | GATC | 6 cut(s) | 187, 309, 414, 556, 598, 630 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 52, 175, 506, 659, 725, 757, 827, 919 |
| BstNI | CCWGG | 3 cut(s) | 71, 428, 568 |
| BstSCI | CCNGG | 5 cut(s) | 69, 386, 387, 426, 566 |
| BstSFI | CTRYAG | 1 cut(s) | 648 |
| BstSLI | GKGCMC | 1 cut(s) | 865 |
| BstUI | CGCG | 2 cut(s) | 513, 830 |
| BstV1I | GCAGC | 7 cut(s) | 101, 383, 394, 412, 512, 662, 738 |
| BstX2I | RGATCY | 1 cut(s) | 630 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 800 |
| BstYI | RGATCY | 1 cut(s) | 630 |
| BsuRI | GGCC | 4 cut(s) | 169, 331, 446, 728 |
| BtgI | CCRYGG | 2 cut(s) | 347, 511 |
| BtrI | CACGTC | 2 cut(s) | 544, 562 |
| BtsCI | GGATG | 3 cut(s) | 88, 688, 793 |
| Cac8I | GCNNGC | 6 cut(s) | 119, 278, 438, 511, 518, 828 |
| CfoI | GCGC | 3 cut(s) | 477, 770, 832 |
| Cfr10I | RCCGGY | 1 cut(s) | 728 |
| Cfr42I | CCGCGG | 1 cut(s) | 514 |
| Cfr9I | CCCGGG | 1 cut(s) | 387 |
| CseI | GACGC | 2 cut(s) | 284, 881 |
| CsiI | ACCWGGT | 1 cut(s) | 69 |
| Csp6I | GTAC | 3 cut(s) | 41, 113, 697 |
| CviAII | CATG | 1 cut(s) | 478 |
| CviQI | GTAC | 3 cut(s) | 41, 113, 697 |
| DdeI | CTNAG | 5 cut(s) | 231, 663, 693, 714, 909 |
| DinI | GGCGCC | 1 cut(s) | 769 |
| DpnI | GATC | 6 cut(s) | 189, 311, 416, 558, 600, 632 |
| DpnII | GATC | 6 cut(s) | 187, 309, 414, 556, 598, 630 |
| Eam1104I | CTCTTC | 1 cut(s) | 665 |
| EarI | CTCTTC | 1 cut(s) | 665 |
| EciI | GGCGGA | 1 cut(s) | 455 |
| Eco130I | CCWWGG | 3 cut(s) | 447, 483, 849 |
| Eco24I | GRGCYC | 1 cut(s) | 10 |
| Eco31I | GGTCTC | 1 cut(s) | 428 |
| Eco57I | CTGAAG | 3 cut(s) | 614, 620, 776 |
| Eco88I | CYCGRG | 1 cut(s) | 387 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 593 |
| EcoRI | GAATTC | 1 cut(s) | 215 |
| EcoRII | CCWGG | 3 cut(s) | 69, 426, 566 |
| EcoT14I | CCWWGG | 3 cut(s) | 447, 483, 849 |
| EcoT38I | GRGCYC | 1 cut(s) | 10 |
| EgeI | GGCGCC | 1 cut(s) | 769 |
| EheI | GGCGCC | 1 cut(s) | 769 |
| ErhI | CCWWGG | 3 cut(s) | 447, 483, 849 |
| Esp3I | CGTCTC | 1 cut(s) | 568 |
| FaeI | CATG | 1 cut(s) | 481 |
| FaiI | YATR | 6 cut(s) | 208, 210, 355, 357, 479, 584 |
| FaqI | GGGAC | 3 cut(s) | 72, 554, 775 |
| FatI | CATG | 1 cut(s) | 477 |
| FauI | CCCGC | 4 cut(s) | 228, 518, 531, 927 |
| FbaI | TGATCA | 2 cut(s) | 309, 556 |
| FblI | GTMKAC | 1 cut(s) | 75 |
| FokI | GGATG | 3 cut(s) | 95, 695, 780 |
| FriOI | GRGCYC | 1 cut(s) | 10 |
| FspBI | CTAG | 3 cut(s) | 165, 572, 937 |
| GlaI | GCGC | 3 cut(s) | 476, 769, 831 |
| GsuI | CTGGAG | 4 cut(s) | 302, 410, 550, 698 |
| HaeII | RGCGCY | 1 cut(s) | 771 |
| HaeIII | GGCC | 4 cut(s) | 169, 331, 446, 728 |
| HapII | CCGG | 4 cut(s) | 170, 388, 729, 896 |
| HgaI | GACGC | 2 cut(s) | 284, 881 |
| HhaI | GCGC | 3 cut(s) | 477, 770, 832 |
| Hin1I | GRCGYC | 1 cut(s) | 768 |
| Hin1II | CATG | 1 cut(s) | 481 |
| Hin6I | GCGC | 3 cut(s) | 475, 768, 830 |
| HinP1I | GCGC | 3 cut(s) | 475, 768, 830 |
| HincII | GTYRAC | 3 cut(s) | 76, 299, 711 |
| HindII | GTYRAC | 3 cut(s) | 76, 299, 711 |
| HinfI | GANTC | 3 cut(s) | 194, 644, 905 |
| HpaI | GTTAAC | 1 cut(s) | 711 |
| HpaII | CCGG | 4 cut(s) | 170, 388, 729, 896 |
| HphI | GGTGA | 4 cut(s) | 308, 520, 628, 679 |
| Hpy166II | GTNNAC | 3 cut(s) | 76, 299, 711 |
| Hpy188I | TCNGA | 1 cut(s) | 639 |
| Hpy188III | TCNNGA | 1 cut(s) | 191 |
| Hpy8I | GTNNAC | 3 cut(s) | 76, 299, 711 |
| Hpy99I | CGWCG | 2 cut(s) | 20, 80 |
| HpyAV | CCTTC | 3 cut(s) | 121, 589, 644 |
| HpyCH4III | ACNGT | 2 cut(s) | 157, 532 |
| HpyCH4IV | ACGT | 4 cut(s) | 543, 561, 656, 744 |
| HpyCH4V | TGCA | 4 cut(s) | 89, 178, 500, 650 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 52, 175, 506, 659, 725, 757, 827, 919 |
| HpyF3I | CTNAG | 5 cut(s) | 231, 663, 693, 714, 909 |
| HpySE526I | ACGT | 4 cut(s) | 543, 561, 656, 744 |
| Hsp92I | GRCGYC | 1 cut(s) | 768 |
| Hsp92II | CATG | 1 cut(s) | 481 |
| HspAI | GCGC | 3 cut(s) | 475, 768, 830 |
| KasI | GGCGCC | 1 cut(s) | 767 |
| Ksp22I | TGATCA | 2 cut(s) | 309, 556 |
| KspAI | GTTAAC | 1 cut(s) | 711 |
| KspI | CCGCGG | 1 cut(s) | 514 |
| Kzo9I | GATC | 6 cut(s) | 187, 309, 414, 556, 598, 630 |
| LmnI | GCTCC | 6 cut(s) | 5, 226, 433, 469, 547, 748 |
| Lsp1109I | GCAGC | 7 cut(s) | 101, 383, 394, 412, 512, 662, 738 |
| LweI | GCATC | 3 cut(s) | 76, 487, 496 |
| MabI | ACCWGGT | 1 cut(s) | 69 |
| MaeI | CTAG | 3 cut(s) | 165, 572, 937 |
| MaeII | ACGT | 4 cut(s) | 543, 561, 656, 744 |
| MaeIII | GTNAC | 3 cut(s) | 28, 157, 314 |
| MalI | GATC | 6 cut(s) | 189, 311, 416, 558, 600, 632 |
| MbiI | CCGCTC | 5 cut(s) | 235, 472, 538, 550, 826 |
| MboI | GATC | 6 cut(s) | 187, 309, 414, 556, 598, 630 |
| MboII | GAAGA | 3 cut(s) | 136, 631, 682 |
| MflI | RGATCY | 1 cut(s) | 630 |
| MhlI | GDGCHC | 2 cut(s) | 10, 865 |
| MluCI | AATT | 1 cut(s) | 215 |
| Mly113I | GGCGCC | 1 cut(s) | 768 |
| MlyI | GAGTC | 2 cut(s) | 188, 899 |
| MseI | TTAA | 1 cut(s) | 710 |
| MspA1I | CMGCKG | 5 cut(s) | 23, 92, 121, 503, 513 |
| MspI | CCGG | 4 cut(s) | 170, 388, 729, 896 |
| MspR9I | CCNGG | 5 cut(s) | 71, 388, 389, 428, 568 |
| MvaI | CCWGG | 3 cut(s) | 71, 428, 568 |
| MvnI | CGCG | 2 cut(s) | 513, 830 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 52, 175, 506, 659, 725, 757, 827, 919 |
| NarI | GGCGCC | 1 cut(s) | 768 |
| NciI | CCSGG | 2 cut(s) | 388, 389 |
| NdeII | GATC | 6 cut(s) | 187, 309, 414, 556, 598, 630 |
| NlaIII | CATG | 1 cut(s) | 481 |
| NlaIV | GGNNCC | 4 cut(s) | 7, 228, 769, 862 |
| NmeAIII | GCCGAG | 1 cut(s) | 307 |
| NmuCI | GTSAC | 3 cut(s) | 28, 157, 314 |
| PfeI | GAWTC | 1 cut(s) | 644 |
| PflFI | GACNNNGTC | 2 cut(s) | 71, 779 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 777 |
| PleI | GAGTC | 2 cut(s) | 188, 899 |
| PluTI | GGCGCC | 1 cut(s) | 771 |
| PpsI | GAGTC | 2 cut(s) | 188, 899 |
| Psp6I | CCWGG | 3 cut(s) | 69, 426, 566 |
| PspGI | CCWGG | 3 cut(s) | 69, 426, 566 |
| PspN4I | GGNNCC | 4 cut(s) | 7, 228, 769, 862 |
| PstI | CTGCAG | 1 cut(s) | 652 |
| PsuI | RGATCY | 1 cut(s) | 630 |
| PsyI | GACNNNGTC | 2 cut(s) | 71, 779 |
| PvuII | CAGCTG | 2 cut(s) | 92, 503 |
| RsaI | GTAC | 3 cut(s) | 42, 114, 698 |
| RsaNI | GTAC | 3 cut(s) | 41, 113, 697 |
| SacII | CCGCGG | 1 cut(s) | 514 |
| SalI | GTCGAC | 1 cut(s) | 74 |
| SaqAI | TTAA | 1 cut(s) | 710 |
| Sau3AI | GATC | 6 cut(s) | 187, 309, 414, 556, 598, 630 |
| SchI | GAGTC | 2 cut(s) | 188, 899 |
| ScrFI | CCNGG | 5 cut(s) | 71, 388, 389, 428, 568 |
| SduI | GDGCHC | 2 cut(s) | 10, 865 |
| SexAI | ACCWGGT | 1 cut(s) | 69 |
| SfaNI | GCATC | 3 cut(s) | 76, 487, 496 |
| SfcI | CTRYAG | 1 cut(s) | 648 |
| SfoI | GGCGCC | 1 cut(s) | 769 |
| Sfr303I | CCGCGG | 1 cut(s) | 514 |
| SgrBI | CCGCGG | 1 cut(s) | 514 |
| SmaI | CCCGGG | 1 cut(s) | 389 |
| SmlI | CTYRAG | 1 cut(s) | 404 |
| SmoI | CTYRAG | 1 cut(s) | 404 |
| Sse9I | AATT | 1 cut(s) | 215 |
| SspDI | GGCGCC | 1 cut(s) | 767 |
| SspMI | CTAG | 3 cut(s) | 165, 572, 937 |
| StyD4I | CCNGG | 5 cut(s) | 69, 386, 387, 426, 566 |
| StyI | CCWWGG | 3 cut(s) | 447, 483, 849 |
| TaaI | ACNGT | 2 cut(s) | 157, 532 |
| TaiI | ACGT | 4 cut(s) | 546, 564, 659, 747 |
| TaqI | TCGA | 4 cut(s) | 75, 146, 192, 417 |
| TasI | AATT | 1 cut(s) | 215 |
| TatI | WGTACW | 1 cut(s) | 696 |
| TauI | GCSGC | 4 cut(s) | 23, 475, 516, 722 |
| TfiI | GAWTC | 1 cut(s) | 644 |
| Tru1I | TTAA | 1 cut(s) | 710 |
| Tru9I | TTAA | 1 cut(s) | 710 |
| TseFI | GTSAC | 3 cut(s) | 28, 157, 314 |
| TseI | GCWGC | 7 cut(s) | 89, 371, 382, 400, 500, 650, 751 |
| Tsp45I | GTSAC | 3 cut(s) | 28, 157, 314 |
| TspGWI | ACGGA | 2 cut(s) | 239, 336 |
| TspMI | CCCGGG | 1 cut(s) | 387 |
| Tth111I | GACNNNGTC | 2 cut(s) | 71, 779 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 777 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 593 |
| XapI | RAATTY | 1 cut(s) | 215 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 454 |
| XmaI | CCCGGG | 1 cut(s) | 387 |
| XmiI | GTMKAC | 1 cut(s) | 75 |
| XspI | CTAG | 3 cut(s) | 165, 572, 937 |