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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 733 |
| AccB1I | GGYRCC | 1 cut(s) | 392 |
| AccBSI | CCGCTC | 2 cut(s) | 482, 695 |
| AccII | CGCG | 4 cut(s) | 163, 432, 515, 736 |
| AcoI | YGGCCR | 2 cut(s) | 703, 751 |
| AcuI | CTGAAG | 1 cut(s) | 527 |
| AcyI | GRCGYC | 2 cut(s) | 393, 730 |
| AfaI | GTAC | 2 cut(s) | 82, 429 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 17, 136, 211, 302, 676 |
| AjnI | CCWGG | 2 cut(s) | 156, 210 |
| AleI | CACNNNNGTG | 1 cut(s) | 58 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 444, 476 |
| AluBI | AGCT | 4 cut(s) | 360, 547, 626, 743 |
| AluI | AGCT | 4 cut(s) | 360, 547, 626, 743 |
| Alw21I | GWGCWC | 1 cut(s) | 628 |
| Alw26I | GTCTC | 3 cut(s) | 55, 189, 651 |
| AoxI | GGCC | 4 cut(s) | 349, 667, 703, 751 |
| ApeKI | GCWGC | 5 cut(s) | 134, 185, 284, 360, 605 |
| AspLEI | GCGC | 6 cut(s) | 163, 266, 280, 395, 434, 517 |
| AspS9I | GGNCC | 4 cut(s) | 165, 241, 332, 350 |
| AsuC2I | CCSGG | 2 cut(s) | 131, 630 |
| AsuHPI | GGTGA | 5 cut(s) | 41, 45, 72, 228, 245 |
| AvaII | GGWCC | 3 cut(s) | 165, 241, 332 |
| BalI | TGGCCA | 2 cut(s) | 705, 753 |
| BanI | GGYRCC | 1 cut(s) | 392 |
| BanII | GRGCYC | 1 cut(s) | 628 |
| BbsI | GAAGAC | 1 cut(s) | 183 |
| Bbv12I | GWGCWC | 1 cut(s) | 628 |
| BbvI | GCAGC | 5 cut(s) | 146, 197, 296, 347, 617 |
| BccI | CCATC | 3 cut(s) | 26, 60, 478 |
| BceAI | ACGGC | 2 cut(s) | 384, 538 |
| BciT130I | CCWGG | 2 cut(s) | 158, 212 |
| BcnI | CCSGG | 2 cut(s) | 131, 630 |
| BcoDI | GTCTC | 3 cut(s) | 55, 189, 651 |
| BfoI | RGCGCY | 3 cut(s) | 267, 281, 396 |
| Bme1390I | CCNGG | 4 cut(s) | 131, 158, 212, 630 |
| Bme18I | GGWCC | 3 cut(s) | 165, 241, 332 |
| BmgT120I | GGNCC | 4 cut(s) | 165, 241, 332, 350 |
| BmiI | GGNNCC | 3 cut(s) | 22, 333, 394 |
| BmrFI | CCNGG | 4 cut(s) | 131, 158, 212, 630 |
| BmsI | GCATC | 2 cut(s) | 28, 136 |
| BpiI | GAAGAC | 1 cut(s) | 183 |
| BpmI | CTGGAG | 2 cut(s) | 288, 633 |
| BpuMI | CCSGG | 2 cut(s) | 131, 630 |
| BsaHI | GRCGYC | 2 cut(s) | 393, 730 |
| BsaI | GGTCTC | 1 cut(s) | 651 |
| BsaJI | CCNNGG | 9 cut(s) | 16, 56, 211, 301, 609, 629, 670, 706, 734 |
| BsaWI | WCCGGW | 1 cut(s) | 23 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 444, 474 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 17, 136, 211, 302, 676 |
| Bse118I | RCCGGY | 1 cut(s) | 280 |
| Bse1I | ACTGG | 3 cut(s) | 11, 47, 225 |
| BseBI | CCWGG | 2 cut(s) | 158, 212 |
| BseDI | CCNNGG | 9 cut(s) | 16, 56, 211, 301, 609, 629, 670, 706, 734 |
| BseGI | GGATG | 2 cut(s) | 151, 754 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 17, 136, 211, 302, 676 |
| BseMII | CTCAG | 1 cut(s) | 108 |
| BseNI | ACTGG | 3 cut(s) | 11, 47, 225 |
| BseRI | GAGGAG | 3 cut(s) | 330, 633, 636 |
| BseXI | GCAGC | 5 cut(s) | 146, 197, 296, 347, 617 |
| BseYI | CCCAGC | 1 cut(s) | 485 |
| BsgI | GTGCAG | 1 cut(s) | 204 |
| Bsh1236I | CGCG | 4 cut(s) | 163, 432, 515, 736 |
| BshFI | GGCC | 4 cut(s) | 351, 669, 705, 753 |
| BshNI | GGYRCC | 1 cut(s) | 392 |
| BsiHKAI | GWGCWC | 1 cut(s) | 628 |
| BsiSI | CCGG | 5 cut(s) | 24, 130, 281, 629, 758 |
| BslFI | GGGAC | 1 cut(s) | 104 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 17, 136, 211, 302, 676 |
| BsmAI | GTCTC | 3 cut(s) | 55, 189, 651 |
| BsmFI | GGGAC | 1 cut(s) | 104 |
| BsnI | GGCC | 4 cut(s) | 351, 669, 705, 753 |
| Bso31I | GGTCTC | 1 cut(s) | 651 |
| Bsp1286I | GDGCHC | 1 cut(s) | 628 |
| Bsp143I | GATC | 1 cut(s) | 407 |
| BspANI | GGCC | 4 cut(s) | 351, 669, 705, 753 |
| BspCNI | CTCAG | 1 cut(s) | 107 |
| BspFNI | CGCG | 4 cut(s) | 163, 432, 515, 736 |
| BspHI | TCATGA | 1 cut(s) | 439 |
| BspLI | GGNNCC | 3 cut(s) | 22, 333, 394 |
| BspT107I | GGYRCC | 1 cut(s) | 392 |
| BspTNI | GGTCTC | 1 cut(s) | 651 |
| BsrBI | CCGCTC | 2 cut(s) | 482, 695 |
| BsrFI | RCCGGY | 1 cut(s) | 280 |
| BsrI | ACTGG | 3 cut(s) | 11, 47, 225 |
| BssAI | RCCGGY | 1 cut(s) | 280 |
| BssECI | CCNNGG | 9 cut(s) | 16, 56, 211, 301, 609, 629, 670, 706, 734 |
| BssMI | GATC | 1 cut(s) | 407 |
| BssNI | GRCGYC | 2 cut(s) | 393, 730 |
| BssT1I | CCWWGG | 3 cut(s) | 56, 670, 706 |
| Bst2UI | CCWGG | 2 cut(s) | 158, 212 |
| Bst4CI | ACNGT | 2 cut(s) | 122, 182 |
| Bst6I | CTCTTC | 2 cut(s) | 301, 307 |
| BstACI | GRCGYC | 2 cut(s) | 393, 730 |
| BstC8I | GCNNGC | 7 cut(s) | 151, 282, 397, 506, 682, 703, 741 |
| BstDEI | CTNAG | 2 cut(s) | 94, 601 |
| BstDSI | CCRYGG | 1 cut(s) | 734 |
| BstF5I | GGATG | 2 cut(s) | 151, 754 |
| BstFNI | CGCG | 4 cut(s) | 163, 432, 515, 736 |
| BstH2I | RGCGCY | 3 cut(s) | 267, 281, 396 |
| BstHHI | GCGC | 6 cut(s) | 163, 266, 280, 395, 434, 517 |
| BstKTI | GATC | 1 cut(s) | 410 |
| BstMAI | GTCTC | 3 cut(s) | 55, 189, 651 |
| BstMBI | GATC | 1 cut(s) | 407 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 227, 284, 357, 429, 514 |
| BstNI | CCWGG | 2 cut(s) | 158, 212 |
| BstSCI | CCNGG | 4 cut(s) | 129, 156, 210, 628 |
| BstUI | CGCG | 4 cut(s) | 163, 432, 515, 736 |
| BstV1I | GCAGC | 5 cut(s) | 146, 197, 296, 347, 617 |
| BstV2I | GAAGAC | 1 cut(s) | 183 |
| BsuRI | GGCC | 4 cut(s) | 351, 669, 705, 753 |
| BtgI | CCRYGG | 1 cut(s) | 734 |
| BtgZI | GCGATG | 1 cut(s) | 51 |
| BtsCI | GGATG | 2 cut(s) | 151, 754 |
| BtsI | GCAGTG | 1 cut(s) | 382 |
| BtsIMutI | CAGTG | 3 cut(s) | 232, 382, 410 |
| Cac8I | GCNNGC | 7 cut(s) | 151, 282, 397, 506, 682, 703, 741 |
| CciI | TCATGA | 1 cut(s) | 439 |
| CfoI | GCGC | 6 cut(s) | 163, 266, 280, 395, 434, 517 |
| Cfr10I | RCCGGY | 1 cut(s) | 280 |
| Cfr13I | GGNCC | 4 cut(s) | 165, 241, 332, 350 |
| Cfr42I | CCGCGG | 1 cut(s) | 737 |
| CseI | GACGC | 1 cut(s) | 352 |
| Csp6I | GTAC | 2 cut(s) | 81, 428 |
| CviAII | CATG | 1 cut(s) | 440 |
| CviQI | GTAC | 2 cut(s) | 81, 428 |
| DdeI | CTNAG | 2 cut(s) | 94, 601 |
| DinI | GGCGCC | 1 cut(s) | 394 |
| DpnI | GATC | 1 cut(s) | 409 |
| DpnII | GATC | 1 cut(s) | 407 |
| EaeI | YGGCCR | 2 cut(s) | 703, 751 |
| Eam1104I | CTCTTC | 2 cut(s) | 301, 307 |
| EarI | CTCTTC | 2 cut(s) | 301, 307 |
| EciI | GGCGGA | 6 cut(s) | 324, 396, 609, 678, 699, 726 |
| Ecl136II | GAGCTC | 1 cut(s) | 626 |
| Eco130I | CCWWGG | 3 cut(s) | 56, 670, 706 |
| Eco24I | GRGCYC | 1 cut(s) | 628 |
| Eco31I | GGTCTC | 1 cut(s) | 651 |
| Eco47I | GGWCC | 3 cut(s) | 165, 241, 332 |
| Eco53kI | GAGCTC | 1 cut(s) | 626 |
| Eco57I | CTGAAG | 1 cut(s) | 527 |
| EcoICRI | GAGCTC | 1 cut(s) | 626 |
| EcoRII | CCWGG | 2 cut(s) | 156, 210 |
| EcoT14I | CCWWGG | 3 cut(s) | 56, 670, 706 |
| EcoT38I | GRGCYC | 1 cut(s) | 628 |
| EgeI | GGCGCC | 1 cut(s) | 394 |
| EheI | GGCGCC | 1 cut(s) | 394 |
| ErhI | CCWWGG | 3 cut(s) | 56, 670, 706 |
| FaeI | CATG | 1 cut(s) | 443 |
| FaiI | YATR | 4 cut(s) | 441, 510, 585, 724 |
| FaqI | GGGAC | 1 cut(s) | 104 |
| FatI | CATG | 1 cut(s) | 439 |
| FauI | CCCGC | 8 cut(s) | 80, 99, 130, 223, 305, 404, 497, 563 |
| FokI | GGATG | 2 cut(s) | 158, 741 |
| FriOI | GRGCYC | 1 cut(s) | 628 |
| GlaI | GCGC | 6 cut(s) | 162, 265, 279, 394, 433, 516 |
| GsaI | CCCAGC | 1 cut(s) | 489 |
| GsuI | CTGGAG | 2 cut(s) | 288, 633 |
| HaeII | RGCGCY | 3 cut(s) | 267, 281, 396 |
| HaeIII | GGCC | 4 cut(s) | 351, 669, 705, 753 |
| HapII | CCGG | 5 cut(s) | 24, 130, 281, 629, 758 |
| HgaI | GACGC | 1 cut(s) | 352 |
| HhaI | GCGC | 6 cut(s) | 163, 266, 280, 395, 434, 517 |
| Hin1I | GRCGYC | 2 cut(s) | 393, 730 |
| Hin1II | CATG | 1 cut(s) | 443 |
| Hin6I | GCGC | 6 cut(s) | 161, 264, 278, 393, 432, 515 |
| HinP1I | GCGC | 6 cut(s) | 161, 264, 278, 393, 432, 515 |
| HinfI | GANTC | 5 cut(s) | 92, 207, 291, 414, 597 |
| HpaII | CCGG | 5 cut(s) | 24, 130, 281, 629, 758 |
| HphI | GGTGA | 5 cut(s) | 41, 45, 72, 228, 245 |
| Hpy188I | TCNGA | 4 cut(s) | 17, 97, 613, 642 |
| Hpy188III | TCNNGA | 3 cut(s) | 411, 440, 650 |
| Hpy99I | CGWCG | 2 cut(s) | 368, 524 |
| HpyAV | CCTTC | 5 cut(s) | 341, 362, 428, 441, 551 |
| HpyCH4III | ACNGT | 2 cut(s) | 122, 182 |
| HpyCH4IV | ACGT | 1 cut(s) | 730 |
| HpyCH4V | TGCA | 3 cut(s) | 185, 375, 726 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 227, 284, 357, 429, 514 |
| HpyF3I | CTNAG | 2 cut(s) | 94, 601 |
| HpySE526I | ACGT | 1 cut(s) | 730 |
| Hsp92I | GRCGYC | 2 cut(s) | 393, 730 |
| Hsp92II | CATG | 1 cut(s) | 443 |
| HspAI | GCGC | 6 cut(s) | 161, 264, 278, 393, 432, 515 |
| KasI | GGCGCC | 1 cut(s) | 392 |
| KroI | GCCGGC | 1 cut(s) | 280 |
| KroNI | GCCGGC | 1 cut(s) | 282 |
| KspI | CCGCGG | 1 cut(s) | 737 |
| Kzo9I | GATC | 1 cut(s) | 407 |
| LmnI | GCTCC | 3 cut(s) | 452, 623, 631 |
| Lsp1109I | GCAGC | 5 cut(s) | 146, 197, 296, 347, 617 |
| LweI | GCATC | 2 cut(s) | 28, 136 |
| MaeII | ACGT | 1 cut(s) | 730 |
| MaeIII | GTNAC | 2 cut(s) | 574, 717 |
| MalI | GATC | 1 cut(s) | 409 |
| MbiI | CCGCTC | 2 cut(s) | 482, 695 |
| MboI | GATC | 1 cut(s) | 407 |
| MboII | GAAGA | 4 cut(s) | 75, 188, 318, 324 |
| MfeI | CAATTG | 1 cut(s) | 526 |
| MhlI | GDGCHC | 1 cut(s) | 628 |
| MlsI | TGGCCA | 2 cut(s) | 705, 753 |
| MluCI | AATT | 1 cut(s) | 526 |
| MluNI | TGGCCA | 2 cut(s) | 705, 753 |
| Mly113I | GGCGCC | 1 cut(s) | 393 |
| MlyI | GAGTC | 5 cut(s) | 86, 216, 285, 408, 606 |
| Mox20I | TGGCCA | 2 cut(s) | 705, 753 |
| MroNI | GCCGGC | 1 cut(s) | 280 |
| MscI | TGGCCA | 2 cut(s) | 705, 753 |
| MslI | CAYNNNNRTG | 2 cut(s) | 58, 475 |
| Msp20I | TGGCCA | 2 cut(s) | 705, 753 |
| MspA1I | CMGCKG | 3 cut(s) | 137, 246, 736 |
| MspI | CCGG | 5 cut(s) | 24, 130, 281, 629, 758 |
| MspR9I | CCNGG | 4 cut(s) | 131, 158, 212, 630 |
| MunI | CAATTG | 1 cut(s) | 526 |
| MvaI | CCWGG | 2 cut(s) | 158, 212 |
| MvnI | CGCG | 4 cut(s) | 163, 432, 515, 736 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 227, 284, 357, 429, 514 |
| NaeI | GCCGGC | 1 cut(s) | 282 |
| NarI | GGCGCC | 1 cut(s) | 393 |
| NciI | CCSGG | 2 cut(s) | 131, 630 |
| NdeII | GATC | 1 cut(s) | 407 |
| NgoMIV | GCCGGC | 1 cut(s) | 280 |
| NlaIII | CATG | 1 cut(s) | 443 |
| NlaIV | GGNNCC | 3 cut(s) | 22, 333, 394 |
| NmeAIII | GCCGAG | 3 cut(s) | 326, 449, 528 |
| NmuCI | GTSAC | 1 cut(s) | 717 |
| OliI | CACNNNNGTG | 1 cut(s) | 58 |
| PagI | TCATGA | 1 cut(s) | 439 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 586 |
| PdiI | GCCGGC | 1 cut(s) | 282 |
| PleI | GAGTC | 5 cut(s) | 86, 215, 285, 408, 605 |
| PluTI | GGCGCC | 1 cut(s) | 396 |
| PpsI | GAGTC | 5 cut(s) | 86, 215, 285, 408, 605 |
| Psp124BI | GAGCTC | 1 cut(s) | 628 |
| Psp6I | CCWGG | 2 cut(s) | 156, 210 |
| PspFI | CCCAGC | 1 cut(s) | 485 |
| PspGI | CCWGG | 2 cut(s) | 156, 210 |
| PspN4I | GGNNCC | 3 cut(s) | 22, 333, 394 |
| PspPI | GGNCC | 4 cut(s) | 165, 241, 332, 350 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 110, 142 |
| RsaI | GTAC | 2 cut(s) | 82, 429 |
| RsaNI | GTAC | 2 cut(s) | 81, 428 |
| RseI | CAYNNNNRTG | 2 cut(s) | 58, 475 |
| SacI | GAGCTC | 1 cut(s) | 628 |
| SacII | CCGCGG | 1 cut(s) | 737 |
| Sau3AI | GATC | 1 cut(s) | 407 |
| Sau96I | GGNCC | 4 cut(s) | 165, 241, 332, 350 |
| SchI | GAGTC | 5 cut(s) | 86, 216, 285, 408, 606 |
| ScrFI | CCNGG | 4 cut(s) | 131, 158, 212, 630 |
| SduI | GDGCHC | 1 cut(s) | 628 |
| SfaNI | GCATC | 2 cut(s) | 28, 136 |
| SfoI | GGCGCC | 1 cut(s) | 394 |
| Sfr303I | CCGCGG | 1 cut(s) | 737 |
| SgrBI | CCGCGG | 1 cut(s) | 737 |
| SinI | GGWCC | 3 cut(s) | 165, 241, 332 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 58, 475 |
| Sse9I | AATT | 1 cut(s) | 526 |
| SspDI | GGCGCC | 1 cut(s) | 392 |
| SstI | GAGCTC | 1 cut(s) | 628 |
| StyD4I | CCNGG | 4 cut(s) | 129, 156, 210, 628 |
| StyI | CCWWGG | 3 cut(s) | 56, 670, 706 |
| TaaI | ACNGT | 2 cut(s) | 122, 182 |
| TaiI | ACGT | 1 cut(s) | 733 |
| TaqI | TCGA | 2 cut(s) | 366, 691 |
| TasI | AATT | 1 cut(s) | 526 |
| TauI | GCSGC | 5 cut(s) | 44, 106, 224, 485, 739 |
| TscAI | CASTG | 3 cut(s) | 232, 382, 410 |
| TseFI | GTSAC | 1 cut(s) | 717 |
| TseI | GCWGC | 5 cut(s) | 134, 185, 284, 360, 605 |
| Tsp45I | GTSAC | 1 cut(s) | 717 |
| TspDTI | ATGAA | 1 cut(s) | 428 |
| TspGWI | ACGGA | 2 cut(s) | 158, 207 |
| TspRI | CASTG | 3 cut(s) | 232, 382, 410 |
| VpaK11BI | GGWCC | 3 cut(s) | 165, 241, 332 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 54, 677 |
| ZraI | GACGTC | 1 cut(s) | 731 |