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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1287 |
| AccB1I | GGYRCC | 2 cut(s) | 1003, 1607 |
| AccBSI | CCGCTC | 6 cut(s) | 754, 1066, 1093, 1249, 1327, 1378 |
| AccI | GTMKAC | 4 cut(s) | 285, 387, 493, 1778 |
| AccII | CGCG | 7 cut(s) | 398, 400, 415, 509, 522, 1290, 1499 |
| AccIII | TCCGGA | 1 cut(s) | 232 |
| AclWI | GGATC | 2 cut(s) | 432, 723 |
| AcoI | YGGCCR | 4 cut(s) | 705, 1257, 1305, 1437 |
| AcuI | CTGAAG | 1 cut(s) | 1503 |
| AcyI | GRCGYC | 4 cut(s) | 1004, 1151, 1284, 1608 |
| AfaI | GTAC | 2 cut(s) | 305, 1492 |
| AfeI | AGCGCT | 1 cut(s) | 1772 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 25, 86, 167, 279, 607, 858, 1171, 1314, 1431 |
| AflIII | ACRYGT | 3 cut(s) | 257, 1336, 1590 |
| AgeI | ACCGGT | 1 cut(s) | 474 |
| AgsI | TTSAA | 3 cut(s) | 1514, 1522, 1597 |
| AjiI | CACGTC | 1 cut(s) | 1339 |
| AjnI | CCWGG | 1 cut(s) | 319 |
| AleI | CACNNNNGTG | 2 cut(s) | 361, 771 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1055, 1087 |
| AluBI | AGCT | 6 cut(s) | 1180, 1297, 1450, 1481, 1694, 1762 |
| AluI | AGCT | 6 cut(s) | 1180, 1297, 1450, 1481, 1694, 1762 |
| Alw21I | GWGCWC | 1 cut(s) | 1182 |
| Alw26I | GTCTC | 9 cut(s) | 37, 56, 118, 241, 617, 660, 1205, 1345, 1664 |
| AlwI | GGATC | 2 cut(s) | 432, 723 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1165 |
| Ama87I | CYCGRG | 3 cut(s) | 223, 620, 1575 |
| Aor13HI | TCCGGA | 1 cut(s) | 232 |
| Aor51HI | AGCGCT | 1 cut(s) | 1772 |
| AoxI | GGCC | 8 cut(s) | 573, 597, 705, 942, 1257, 1305, 1437, 1572 |
| ApaI | GGGCCC | 2 cut(s) | 946, 1576 |
| ApeKI | GCWGC | 4 cut(s) | 1159, 1369, 1414, 1450 |
| AsiGI | ACCGGT | 1 cut(s) | 474 |
| AspLEI | GCGC | 8 cut(s) | 335, 400, 511, 634, 1006, 1045, 1610, 1773 |
| AspS9I | GGNCC | 9 cut(s) | 544, 598, 696, 776, 849, 942, 943, 1572, 1573 |
| AsuC2I | CCSGG | 5 cut(s) | 295, 548, 859, 1576, 1577 |
| AsuHPI | GGTGA | 2 cut(s) | 853, 1472 |
| AvaI | CYCGRG | 3 cut(s) | 223, 620, 1575 |
| AvaII | GGWCC | 4 cut(s) | 544, 696, 776, 849 |
| BaeGI | GKGCMC | 2 cut(s) | 946, 1576 |
| BalI | TGGCCA | 2 cut(s) | 1259, 1307 |
| BanI | GGYRCC | 2 cut(s) | 1003, 1607 |
| BanII | GRGCYC | 4 cut(s) | 946, 1103, 1182, 1576 |
| BbsI | GAAGAC | 4 cut(s) | 353, 965, 986, 1550 |
| Bbv12I | GWGCWC | 1 cut(s) | 1182 |
| BbvI | GCAGC | 4 cut(s) | 1171, 1356, 1426, 1437 |
| BccI | CCATC | 6 cut(s) | 535, 665, 1089, 1316, 1429, 1781 |
| BceAI | ACGGC | 7 cut(s) | 313, 720, 750, 909, 933, 995, 1691 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 794, 828 |
| BciT130I | CCWGG | 1 cut(s) | 321 |
| BciVI | GTATCC | 2 cut(s) | 1670, 1750 |
| BcnI | CCSGG | 5 cut(s) | 295, 548, 859, 1576, 1577 |
| BcoDI | GTCTC | 9 cut(s) | 37, 56, 118, 241, 617, 660, 1205, 1345, 1664 |
| BfaI | CTAG | 1 cut(s) | 456 |
| BfmI | CTRYAG | 1 cut(s) | 681 |
| BfoI | RGCGCY | 4 cut(s) | 635, 1007, 1611, 1774 |
| BfuI | GTATCC | 2 cut(s) | 1670, 1750 |
| BlpI | GCTNAGC | 2 cut(s) | 36, 117 |
| BmcAI | AGTACT | 1 cut(s) | 1492 |
| Bme1390I | CCNGG | 6 cut(s) | 295, 321, 548, 859, 1576, 1577 |
| Bme18I | GGWCC | 4 cut(s) | 544, 696, 776, 849 |
| BmeT110I | CYCGRG | 3 cut(s) | 223, 620, 1575 |
| BmgBI | CACGTC | 1 cut(s) | 1339 |
| BmgT120I | GGNCC | 9 cut(s) | 544, 598, 696, 776, 849, 942, 943, 1572, 1573 |
| BmrFI | CCNGG | 6 cut(s) | 295, 321, 548, 859, 1576, 1577 |
| BmsI | GCATC | 2 cut(s) | 747, 1741 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1676 |
| BpiI | GAAGAC | 4 cut(s) | 353, 965, 986, 1550 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1010, 1042 |
| BpmI | CTGGAG | 2 cut(s) | 590, 1716 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1181, 1389 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 36, 117 |
| BpuEI | CTTGAG | 1 cut(s) | 1778 |
| BpuMI | CCSGG | 5 cut(s) | 295, 548, 859, 1576, 1577 |
| BsaAI | YACGTR | 1 cut(s) | 260 |
| BsaHI | GRCGYC | 4 cut(s) | 1004, 1151, 1284, 1608 |
| BsaI | GGTCTC | 1 cut(s) | 1205 |
| BsaJI | CCNNGG | 9 cut(s) | 211, 222, 319, 585, 645, 1260, 1288, 1554, 1575 |
| BsaWI | WCCGGW | 3 cut(s) | 232, 474, 1599 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 25, 86, 167, 279, 607, 858, 1171, 1314, 1431 |
| Bse118I | RCCGGY | 4 cut(s) | 474, 707, 796, 1648 |
| Bse1I | ACTGG | 2 cut(s) | 833, 1239 |
| Bse3DI | GCAATG | 2 cut(s) | 810, 1753 |
| BseAI | TCCGGA | 1 cut(s) | 232 |
| BseBI | CCWGG | 1 cut(s) | 321 |
| BseDI | CCNNGG | 9 cut(s) | 211, 222, 319, 585, 645, 1260, 1288, 1554, 1575 |
| BseGI | GGATG | 3 cut(s) | 676, 762, 1440 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 25, 86, 167, 279, 607, 858, 1171, 1314, 1431 |
| BseMI | GCAATG | 2 cut(s) | 810, 1753 |
| BseMII | CTCAG | 7 cut(s) | 50, 131, 350, 626, 1195, 1466, 1644 |
| BseNI | ACTGG | 2 cut(s) | 833, 1239 |
| BseRI | GAGGAG | 2 cut(s) | 839, 1745 |
| BseSI | GKGCMC | 2 cut(s) | 946, 1576 |
| BseX3I | CGGCCG | 1 cut(s) | 705 |
| BseXI | GCAGC | 4 cut(s) | 1171, 1356, 1426, 1437 |
| BseYI | CCCAGC | 6 cut(s) | 600, 737, 1096, 1453, 1568, 1690 |
| BsgI | GTGCAG | 2 cut(s) | 707, 1433 |
| Bsh1236I | CGCG | 7 cut(s) | 398, 400, 415, 509, 522, 1290, 1499 |
| Bsh1285I | CGRYCG | 1 cut(s) | 708 |
| BshFI | GGCC | 8 cut(s) | 575, 599, 707, 944, 1259, 1307, 1439, 1574 |
| BshNI | GGYRCC | 2 cut(s) | 1003, 1607 |
| BshTI | ACCGGT | 1 cut(s) | 474 |
| BsiEI | CGRYCG | 1 cut(s) | 708 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1182 |
| BsiHKCI | CYCGRG | 3 cut(s) | 223, 620, 1575 |
| BslFI | GGGAC | 3 cut(s) | 391, 709, 1331 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 25, 86, 167, 279, 607, 858, 1171, 1314, 1431 |
| BsmAI | GTCTC | 9 cut(s) | 37, 56, 118, 241, 617, 660, 1205, 1345, 1664 |
| BsmBI | CGTCTC | 4 cut(s) | 56, 617, 660, 1345 |
| BsmFI | GGGAC | 3 cut(s) | 391, 709, 1331 |
| BsnI | GGCC | 8 cut(s) | 575, 599, 707, 944, 1259, 1307, 1439, 1574 |
| Bso31I | GGTCTC | 1 cut(s) | 1205 |
| BsoBI | CYCGRG | 3 cut(s) | 223, 620, 1575 |
| Bsp120I | GGGCCC | 2 cut(s) | 942, 1572 |
| Bsp1286I | GDGCHC | 4 cut(s) | 946, 1103, 1182, 1576 |
| Bsp13I | TCCGGA | 1 cut(s) | 232 |
| Bsp143I | GATC | 3 cut(s) | 424, 715, 1359 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 36, 117 |
| Bsp68I | TCGCGA | 1 cut(s) | 522 |
| BspANI | GGCC | 8 cut(s) | 575, 599, 707, 944, 1259, 1307, 1439, 1574 |
| BspCNI | CTCAG | 7 cut(s) | 49, 130, 351, 627, 1194, 1467, 1645 |
| BspEI | TCCGGA | 1 cut(s) | 232 |
| BspFNI | CGCG | 7 cut(s) | 398, 400, 415, 509, 522, 1290, 1499 |
| BspHI | TCATGA | 1 cut(s) | 1726 |
| BspPI | GGATC | 2 cut(s) | 432, 723 |
| BspT107I | GGYRCC | 2 cut(s) | 1003, 1607 |
| BspTNI | GGTCTC | 1 cut(s) | 1205 |
| BsrBI | CCGCTC | 6 cut(s) | 754, 1066, 1093, 1249, 1327, 1378 |
| BsrDI | GCAATG | 2 cut(s) | 810, 1753 |
| BsrFI | RCCGGY | 4 cut(s) | 474, 707, 796, 1648 |
| BsrI | ACTGG | 2 cut(s) | 833, 1239 |
| BssAI | RCCGGY | 4 cut(s) | 474, 707, 796, 1648 |
| BssECI | CCNNGG | 9 cut(s) | 211, 222, 319, 585, 645, 1260, 1288, 1554, 1575 |
| BssMI | GATC | 3 cut(s) | 424, 715, 1359 |
| BssNAI | GTATAC | 2 cut(s) | 286, 388 |
| BssNI | GRCGYC | 4 cut(s) | 1004, 1151, 1284, 1608 |
| BssT1I | CCWWGG | 1 cut(s) | 1260 |
| Bst1107I | GTATAC | 2 cut(s) | 286, 388 |
| Bst2UI | CCWGG | 1 cut(s) | 321 |
| Bst4CI | ACNGT | 3 cut(s) | 197, 340, 610 |
| Bst6I | CTCTTC | 3 cut(s) | 400, 909, 1082 |
| BstACI | GRCGYC | 4 cut(s) | 1004, 1151, 1284, 1608 |
| BstBAI | YACGTR | 1 cut(s) | 260 |
| BstDEI | CTNAG | 8 cut(s) | 36, 117, 359, 635, 1181, 1389, 1475, 1653 |
| BstDSI | CCRYGG | 1 cut(s) | 1288 |
| BstEII | GGTNACC | 1 cut(s) | 1465 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1169 |
| BstF5I | GGATG | 3 cut(s) | 676, 762, 1440 |
| BstFNI | CGCG | 7 cut(s) | 398, 400, 415, 509, 522, 1290, 1499 |
| BstH2I | RGCGCY | 4 cut(s) | 635, 1007, 1611, 1774 |
| BstHHI | GCGC | 8 cut(s) | 335, 400, 511, 634, 1006, 1045, 1610, 1773 |
| BstKTI | GATC | 3 cut(s) | 427, 718, 1362 |
| BstMAI | GTCTC | 9 cut(s) | 37, 56, 118, 241, 617, 660, 1205, 1345, 1664 |
| BstMBI | GATC | 3 cut(s) | 424, 715, 1359 |
| BstMCI | CGRYCG | 1 cut(s) | 708 |
| BstNI | CCWGG | 1 cut(s) | 321 |
| BstNSI | RCATGY | 2 cut(s) | 1594, 1739 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1676 |
| BstPI | GGTNACC | 1 cut(s) | 1465 |
| BstSCI | CCNGG | 6 cut(s) | 293, 319, 546, 857, 1574, 1575 |
| BstSFI | CTRYAG | 1 cut(s) | 681 |
| BstSLI | GKGCMC | 2 cut(s) | 946, 1576 |
| BstUI | CGCG | 7 cut(s) | 398, 400, 415, 509, 522, 1290, 1499 |
| BstV1I | GCAGC | 4 cut(s) | 1171, 1356, 1426, 1437 |
| BstV2I | GAAGAC | 4 cut(s) | 353, 965, 986, 1550 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 773 |
| BstZ17I | GTATAC | 2 cut(s) | 286, 388 |
| BstZI | CGGCCG | 1 cut(s) | 705 |
| BsuI | GTATCC | 2 cut(s) | 1670, 1750 |
| BsuRI | GGCC | 8 cut(s) | 575, 599, 707, 944, 1259, 1307, 1439, 1574 |
| BtgI | CCRYGG | 1 cut(s) | 1288 |
| BtrI | CACGTC | 1 cut(s) | 1339 |
| BtsCI | GGATG | 3 cut(s) | 676, 762, 1440 |
| BtsIMutI | CAGTG | 4 cut(s) | 356, 840, 1021, 1547 |
| BtuMI | TCGCGA | 1 cut(s) | 522 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1165 |
| CciI | TCATGA | 1 cut(s) | 1726 |
| CfoI | GCGC | 8 cut(s) | 335, 400, 511, 634, 1006, 1045, 1610, 1773 |
| Cfr10I | RCCGGY | 4 cut(s) | 474, 707, 796, 1648 |
| Cfr13I | GGNCC | 9 cut(s) | 544, 598, 696, 776, 849, 942, 943, 1572, 1573 |
| Cfr42I | CCGCGG | 1 cut(s) | 1291 |
| Cfr9I | CCCGGG | 1 cut(s) | 1575 |
| CseI | GACGC | 4 cut(s) | 533, 1140, 1488, 1617 |
| Csp6I | GTAC | 2 cut(s) | 304, 1491 |
| CspAI | ACCGGT | 1 cut(s) | 474 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1492, 1527 |
| CviAII | CATG | 5 cut(s) | 577, 1133, 1591, 1727, 1736 |
| CviQI | GTAC | 2 cut(s) | 304, 1491 |
| DdeI | CTNAG | 8 cut(s) | 36, 117, 359, 635, 1181, 1389, 1475, 1653 |
| DinI | GGCGCC | 2 cut(s) | 1005, 1609 |
| DpnI | GATC | 3 cut(s) | 426, 717, 1361 |
| DpnII | GATC | 3 cut(s) | 424, 715, 1359 |
| EaeI | YGGCCR | 4 cut(s) | 705, 1257, 1305, 1437 |
| EagI | CGGCCG | 1 cut(s) | 705 |
| Eam1104I | CTCTTC | 3 cut(s) | 400, 909, 1082 |
| EarI | CTCTTC | 3 cut(s) | 400, 909, 1082 |
| EciI | GGCGGA | 6 cut(s) | 455, 566, 815, 1232, 1253, 1414 |
| Ecl136II | GAGCTC | 1 cut(s) | 1180 |
| EclXI | CGGCCG | 1 cut(s) | 705 |
| Eco130I | CCWWGG | 1 cut(s) | 1260 |
| Eco24I | GRGCYC | 4 cut(s) | 946, 1103, 1182, 1576 |
| Eco31I | GGTCTC | 1 cut(s) | 1205 |
| Eco47I | GGWCC | 4 cut(s) | 544, 696, 776, 849 |
| Eco47III | AGCGCT | 1 cut(s) | 1772 |
| Eco52I | CGGCCG | 1 cut(s) | 705 |
| Eco53kI | GAGCTC | 1 cut(s) | 1180 |
| Eco57I | CTGAAG | 1 cut(s) | 1503 |
| Eco88I | CYCGRG | 3 cut(s) | 223, 620, 1575 |
| Eco91I | GGTNACC | 1 cut(s) | 1465 |
| EcoICRI | GAGCTC | 1 cut(s) | 1180 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1169 |
| EcoO109I | RGGNCCY | 3 cut(s) | 696, 942, 1572 |
| EcoO65I | GGTNACC | 1 cut(s) | 1465 |
| EcoRII | CCWGG | 1 cut(s) | 319 |
| EcoT14I | CCWWGG | 1 cut(s) | 1260 |
| EcoT38I | GRGCYC | 4 cut(s) | 946, 1103, 1182, 1576 |
| EgeI | GGCGCC | 2 cut(s) | 1005, 1609 |
| EheI | GGCGCC | 2 cut(s) | 1005, 1609 |
| ErhI | CCWWGG | 1 cut(s) | 1260 |
| Esp3I | CGTCTC | 4 cut(s) | 56, 617, 660, 1345 |
| FaeI | CATG | 5 cut(s) | 580, 1136, 1594, 1730, 1739 |
| FaqI | GGGAC | 3 cut(s) | 391, 709, 1331 |
| FatI | CATG | 5 cut(s) | 576, 1132, 1590, 1726, 1735 |
| FblI | GTMKAC | 4 cut(s) | 285, 387, 493, 1778 |
| FokI | GGATG | 3 cut(s) | 683, 769, 1447 |
| FriOI | GRGCYC | 4 cut(s) | 946, 1103, 1182, 1576 |
| FspBI | CTAG | 1 cut(s) | 456 |
| GlaI | GCGC | 8 cut(s) | 334, 399, 510, 633, 1005, 1044, 1609, 1772 |
| GsaI | CCCAGC | 6 cut(s) | 604, 741, 1100, 1457, 1572, 1694 |
| GsuI | CTGGAG | 2 cut(s) | 590, 1716 |
| HaeII | RGCGCY | 4 cut(s) | 635, 1007, 1611, 1774 |
| HaeIII | GGCC | 8 cut(s) | 575, 599, 707, 944, 1259, 1307, 1439, 1574 |
| HgaI | GACGC | 4 cut(s) | 533, 1140, 1488, 1617 |
| HhaI | GCGC | 8 cut(s) | 335, 400, 511, 634, 1006, 1045, 1610, 1773 |
| Hin1I | GRCGYC | 4 cut(s) | 1004, 1151, 1284, 1608 |
| Hin1II | CATG | 5 cut(s) | 580, 1136, 1594, 1730, 1739 |
| Hin6I | GCGC | 8 cut(s) | 333, 398, 509, 632, 1004, 1043, 1608, 1771 |
| HinP1I | GCGC | 8 cut(s) | 333, 398, 509, 632, 1004, 1043, 1608, 1771 |
| HincII | GTYRAC | 2 cut(s) | 494, 1779 |
| HindII | GTYRAC | 2 cut(s) | 494, 1779 |
| HinfI | GANTC | 5 cut(s) | 290, 637, 899, 1025, 1421 |
| HphI | GGTGA | 2 cut(s) | 853, 1472 |
| Hpy166II | GTNNAC | 7 cut(s) | 270, 286, 388, 494, 616, 1503, 1779 |
| Hpy188I | TCNGA | 6 cut(s) | 177, 429, 646, 720, 954, 1196 |
| Hpy188III | TCNNGA | 5 cut(s) | 233, 521, 569, 905, 1727 |
| Hpy8I | GTNNAC | 7 cut(s) | 270, 286, 388, 494, 616, 1503, 1779 |
| Hpy99I | CGWCG | 2 cut(s) | 527, 1156 |
| HpyAV | CCTTC | 7 cut(s) | 529, 742, 862, 1052, 1478, 1558, 1597 |
| HpyCH4III | ACNGT | 3 cut(s) | 197, 340, 610 |
| HpyCH4IV | ACGT | 5 cut(s) | 190, 259, 626, 1284, 1338 |
| HpyCH4V | TGCA | 5 cut(s) | 688, 793, 1372, 1414, 1754 |
| HpyF3I | CTNAG | 8 cut(s) | 36, 117, 359, 635, 1181, 1389, 1475, 1653 |
| HpySE526I | ACGT | 5 cut(s) | 190, 259, 626, 1284, 1338 |
| Hsp92I | GRCGYC | 4 cut(s) | 1004, 1151, 1284, 1608 |
| Hsp92II | CATG | 5 cut(s) | 580, 1136, 1594, 1730, 1739 |
| HspAI | GCGC | 8 cut(s) | 333, 398, 509, 632, 1004, 1043, 1608, 1771 |
| KasI | GGCGCC | 2 cut(s) | 1003, 1607 |
| KflI | GGGWCCC | 1 cut(s) | 696 |
| Kpn2I | TCCGGA | 1 cut(s) | 232 |
| KroI | GCCGGC | 1 cut(s) | 707 |
| KroNI | GCCGGC | 1 cut(s) | 709 |
| KspI | CCGCGG | 1 cut(s) | 1291 |
| Kzo9I | GATC | 3 cut(s) | 424, 715, 1359 |
| LmnI | GCTCC | 9 cut(s) | 516, 751, 826, 976, 1063, 1324, 1351, 1697, 1732 |
| Lsp1109I | GCAGC | 4 cut(s) | 1171, 1356, 1426, 1437 |
| LweI | GCATC | 2 cut(s) | 747, 1741 |
| MaeI | CTAG | 1 cut(s) | 456 |
| MaeII | ACGT | 5 cut(s) | 190, 259, 626, 1284, 1338 |
| MalI | GATC | 3 cut(s) | 426, 717, 1361 |
| MbiI | CCGCTC | 6 cut(s) | 754, 1066, 1093, 1249, 1327, 1378 |
| MboI | GATC | 3 cut(s) | 424, 715, 1359 |
| MhlI | GDGCHC | 4 cut(s) | 946, 1103, 1182, 1576 |
| MlsI | TGGCCA | 2 cut(s) | 1259, 1307 |
| MluCI | AATT | 1 cut(s) | 562 |
| MluNI | TGGCCA | 2 cut(s) | 1259, 1307 |
| Mly113I | GGCGCC | 2 cut(s) | 1004, 1608 |
| MlyI | GAGTC | 3 cut(s) | 646, 1019, 1430 |
| MmeI | TCCRAC | 3 cut(s) | 855, 1002, 1329 |
| Mox20I | TGGCCA | 2 cut(s) | 1259, 1307 |
| MroI | TCCGGA | 1 cut(s) | 232 |
| MroNI | GCCGGC | 1 cut(s) | 707 |
| MscI | TGGCCA | 2 cut(s) | 1259, 1307 |
| MseI | TTAA | 3 cut(s) | 504, 1539, 1767 |
| MslI | CAYNNNNRTG | 3 cut(s) | 361, 771, 1409 |
| Msp20I | TGGCCA | 2 cut(s) | 1259, 1307 |
| MspA1I | CMGCKG | 9 cut(s) | 21, 40, 82, 121, 163, 1290, 1417, 1508, 1694 |
| MspR9I | CCNGG | 6 cut(s) | 295, 321, 548, 859, 1576, 1577 |
| MvaI | CCWGG | 1 cut(s) | 321 |
| MvnI | CGCG | 7 cut(s) | 398, 400, 415, 509, 522, 1290, 1499 |
| NaeI | GCCGGC | 1 cut(s) | 709 |
| NarI | GGCGCC | 2 cut(s) | 1004, 1608 |
| NciI | CCSGG | 5 cut(s) | 295, 548, 859, 1576, 1577 |
| NdeII | GATC | 3 cut(s) | 424, 715, 1359 |
| NgoMIV | GCCGGC | 1 cut(s) | 707 |
| NlaIII | CATG | 5 cut(s) | 580, 1136, 1594, 1730, 1739 |
| NmeAIII | GCCGAG | 2 cut(s) | 610, 1060 |
| NmuCI | GTSAC | 4 cut(s) | 131, 841, 1271, 1629 |
| NruI | TCGCGA | 1 cut(s) | 522 |
| NspI | RCATGY | 2 cut(s) | 1594, 1739 |
| OliI | CACNNNNGTG | 2 cut(s) | 361, 771 |
| PagI | TCATGA | 1 cut(s) | 1726 |
| PciI | ACATGT | 1 cut(s) | 1590 |
| PdiI | GCCGGC | 1 cut(s) | 709 |
| PfeI | GAWTC | 2 cut(s) | 290, 899 |
| PflFI | GACNNNGTC | 3 cut(s) | 48, 129, 806 |
| PfoI | TCCNGGA | 1 cut(s) | 293 |
| PinAI | ACCGGT | 1 cut(s) | 474 |
| PleI | GAGTC | 3 cut(s) | 645, 1019, 1429 |
| PluTI | GGCGCC | 2 cut(s) | 1007, 1611 |
| PpsI | GAGTC | 3 cut(s) | 645, 1019, 1429 |
| Ppu21I | YACGTR | 1 cut(s) | 260 |
| PpuMI | RGGWCCY | 1 cut(s) | 696 |
| PscI | ACATGT | 1 cut(s) | 1590 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1676 |
| Psp124BI | GAGCTC | 1 cut(s) | 1182 |
| Psp5II | RGGWCCY | 1 cut(s) | 696 |
| Psp6I | CCWGG | 1 cut(s) | 319 |
| PspEI | GGTNACC | 1 cut(s) | 1465 |
| PspFI | CCCAGC | 6 cut(s) | 600, 737, 1096, 1453, 1568, 1690 |
| PspGI | CCWGG | 1 cut(s) | 319 |
| PspOMI | GGGCCC | 2 cut(s) | 942, 1572 |
| PspPI | GGNCC | 9 cut(s) | 544, 598, 696, 776, 849, 942, 943, 1572, 1573 |
| PspPPI | RGGWCCY | 1 cut(s) | 696 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1165 |
| PsyI | GACNNNGTC | 3 cut(s) | 48, 129, 806 |
| PvuII | CAGCTG | 1 cut(s) | 1694 |
| RruI | TCGCGA | 1 cut(s) | 522 |
| RsaI | GTAC | 2 cut(s) | 305, 1492 |
| RsaNI | GTAC | 2 cut(s) | 304, 1491 |
| RseI | CAYNNNNRTG | 3 cut(s) | 361, 771, 1409 |
| SacI | GAGCTC | 1 cut(s) | 1182 |
| SacII | CCGCGG | 1 cut(s) | 1291 |
| SalI | GTCGAC | 2 cut(s) | 492, 1777 |
| SaqAI | TTAA | 3 cut(s) | 504, 1539, 1767 |
| Sau3AI | GATC | 3 cut(s) | 424, 715, 1359 |
| Sau96I | GGNCC | 9 cut(s) | 544, 598, 696, 776, 849, 942, 943, 1572, 1573 |
| ScaI | AGTACT | 1 cut(s) | 1492 |
| SchI | GAGTC | 3 cut(s) | 646, 1019, 1430 |
| ScrFI | CCNGG | 6 cut(s) | 295, 321, 548, 859, 1576, 1577 |
| SduI | GDGCHC | 4 cut(s) | 946, 1103, 1182, 1576 |
| SfaNI | GCATC | 2 cut(s) | 747, 1741 |
| SfcI | CTRYAG | 1 cut(s) | 681 |
| SfoI | GGCGCC | 2 cut(s) | 1005, 1609 |
| Sfr303I | CCGCGG | 1 cut(s) | 1291 |
| SgrBI | CCGCGG | 1 cut(s) | 1291 |
| SinI | GGWCC | 4 cut(s) | 544, 696, 776, 849 |
| SmaI | CCCGGG | 1 cut(s) | 1577 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 361, 771, 1409 |
| SmlI | CTYRAG | 1 cut(s) | 1757 |
| SmoI | CTYRAG | 1 cut(s) | 1757 |
| SrfI | GCCCGGGC | 1 cut(s) | 1577 |
| Sse9I | AATT | 1 cut(s) | 562 |
| SspDI | GGCGCC | 2 cut(s) | 1003, 1607 |
| SspMI | CTAG | 1 cut(s) | 456 |
| SstI | GAGCTC | 1 cut(s) | 1182 |
| StyD4I | CCNGG | 6 cut(s) | 293, 319, 546, 857, 1574, 1575 |
| StyI | CCWWGG | 1 cut(s) | 1260 |
| TaaI | ACNGT | 3 cut(s) | 197, 340, 610 |
| TaiI | ACGT | 5 cut(s) | 193, 262, 629, 1287, 1341 |
| TaqI | TCGA | 5 cut(s) | 464, 493, 1154, 1245, 1778 |
| TaqII | GACCGA | 1 cut(s) | 1568 |
| TasI | AATT | 1 cut(s) | 562 |
| TatI | WGTACW | 1 cut(s) | 1490 |
| TfiI | GAWTC | 2 cut(s) | 290, 899 |
| Tru1I | TTAA | 3 cut(s) | 504, 1539, 1767 |
| Tru9I | TTAA | 3 cut(s) | 504, 1539, 1767 |
| TscAI | CASTG | 4 cut(s) | 363, 840, 1021, 1554 |
| TseFI | GTSAC | 4 cut(s) | 131, 841, 1271, 1629 |
| TseI | GCWGC | 4 cut(s) | 1159, 1369, 1414, 1450 |
| Tsp45I | GTSAC | 4 cut(s) | 131, 841, 1271, 1629 |
| TspDTI | ATGAA | 2 cut(s) | 1347, 1715 |
| TspGWI | ACGGA | 1 cut(s) | 642 |
| TspMI | CCCGGG | 1 cut(s) | 1575 |
| TspRI | CASTG | 4 cut(s) | 363, 840, 1021, 1554 |
| Tth111I | GACNNNGTC | 3 cut(s) | 48, 129, 806 |
| VpaK11BI | GGWCC | 4 cut(s) | 544, 696, 776, 849 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1169 |
| XceI | RCATGY | 2 cut(s) | 1594, 1739 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 194 |
| XmaI | CCCGGG | 1 cut(s) | 1575 |
| XmiI | GTMKAC | 4 cut(s) | 285, 387, 493, 1778 |
| XspI | CTAG | 1 cut(s) | 456 |
| ZraI | GACGTC | 1 cut(s) | 1285 |
| ZrmI | AGTACT | 1 cut(s) | 1492 |