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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 260 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 270 |
| AccII | CGCG | 3 cut(s) | 147, 299, 441 |
| AciI | CCGC | 6 cut(s) | 81, 92, 145, 310, 406, 439 |
| AclWI | GGATC | 1 cut(s) | 55 |
| AcsI | RAATTY | 1 cut(s) | 104 |
| AcuI | CTGAAG | 2 cut(s) | 44, 450 |
| AcyI | GRCGYC | 1 cut(s) | 488 |
| AfaI | GTAC | 1 cut(s) | 478 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 25, 37, 70, 129, 151, 270, 466 |
| AgsI | TTSAA | 2 cut(s) | 68, 250 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 492 |
| AjnI | CCWGG | 2 cut(s) | 237, 528 |
| AluBI | AGCT | 5 cut(s) | 34, 97, 196, 327, 544 |
| AluI | AGCT | 5 cut(s) | 34, 97, 196, 327, 544 |
| AlwI | GGATC | 1 cut(s) | 55 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 155 |
| Ama87I | CYCGRG | 1 cut(s) | 465 |
| AoxI | GGCC | 1 cut(s) | 311 |
| ApeKI | GCWGC | 6 cut(s) | 155, 307, 335, 338, 544, 572 |
| ApoI | RAATTY | 1 cut(s) | 104 |
| AspLEI | GCGC | 4 cut(s) | 149, 202, 299, 443 |
| AspS9I | GGNCC | 3 cut(s) | 28, 241, 386 |
| AsuC2I | CCSGG | 1 cut(s) | 124 |
| AsuHPI | GGTGA | 2 cut(s) | 383, 496 |
| AvaI | CYCGRG | 1 cut(s) | 465 |
| AvaII | GGWCC | 3 cut(s) | 28, 241, 386 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 468, 501 |
| BanI | GGYRCC | 1 cut(s) | 260 |
| BbvI | GCAGC | 6 cut(s) | 142, 319, 322, 325, 531, 559 |
| BccI | CCATC | 2 cut(s) | 250, 467 |
| BciT130I | CCWGG | 2 cut(s) | 239, 530 |
| BclI | TGATCA | 2 cut(s) | 379, 514 |
| BcnI | CCSGG | 1 cut(s) | 124 |
| BfaI | CTAG | 1 cut(s) | 35 |
| BfmI | CTRYAG | 1 cut(s) | 545 |
| BisI | GCNGC | 9 cut(s) | 81, 145, 156, 308, 311, 336, 339, 545, 573 |
| BlsI | GCNGC | 9 cut(s) | 82, 146, 157, 309, 312, 337, 340, 546, 574 |
| Bme1390I | CCNGG | 3 cut(s) | 124, 239, 530 |
| Bme18I | GGWCC | 3 cut(s) | 28, 241, 386 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 492 |
| BmeT110I | CYCGRG | 1 cut(s) | 465 |
| BmgT120I | GGNCC | 3 cut(s) | 28, 241, 386 |
| BmiI | GGNNCC | 2 cut(s) | 143, 262 |
| BmrFI | CCNGG | 3 cut(s) | 124, 239, 530 |
| BmrI | ACTGGG | 1 cut(s) | 280 |
| BmsI | GCATC | 3 cut(s) | 343, 385, 407 |
| BmuI | ACTGGG | 1 cut(s) | 280 |
| BpmI | CTGGAG | 1 cut(s) | 23 |
| Bpu10I | CCTNAGC | 1 cut(s) | 128 |
| BpuMI | CCSGG | 1 cut(s) | 124 |
| BsaHI | GRCGYC | 1 cut(s) | 488 |
| BsaJI | CCNNGG | 2 cut(s) | 162, 183 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 400, 430 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 25, 37, 70, 129, 151, 270, 466 |
| Bse1I | ACTGG | 1 cut(s) | 275 |
| BseBI | CCWGG | 2 cut(s) | 239, 530 |
| BseDI | CCNNGG | 2 cut(s) | 162, 183 |
| BseGI | GGATG | 2 cut(s) | 118, 478 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 25, 37, 70, 129, 151, 270, 466 |
| BseMII | CTCAG | 1 cut(s) | 416 |
| BseNI | ACTGG | 1 cut(s) | 275 |
| BseRI | GAGGAG | 2 cut(s) | 154, 572 |
| BseXI | GCAGC | 6 cut(s) | 142, 319, 322, 325, 531, 559 |
| Bsh1236I | CGCG | 3 cut(s) | 147, 299, 441 |
| BshFI | GGCC | 1 cut(s) | 313 |
| BshNI | GGYRCC | 1 cut(s) | 260 |
| BsiHKCI | CYCGRG | 1 cut(s) | 465 |
| BsiSI | CCGG | 2 cut(s) | 124, 389 |
| BslFI | GGGAC | 3 cut(s) | 268, 421, 480 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 25, 37, 70, 129, 151, 270, 466 |
| BsmFI | GGGAC | 3 cut(s) | 268, 421, 480 |
| BsnI | GGCC | 1 cut(s) | 313 |
| BsoBI | CYCGRG | 1 cut(s) | 465 |
| Bsp143I | GATC | 3 cut(s) | 60, 379, 514 |
| BspACI | CCGC | 6 cut(s) | 81, 92, 145, 310, 406, 439 |
| BspANI | GGCC | 1 cut(s) | 313 |
| BspCNI | CTCAG | 1 cut(s) | 415 |
| BspFNI | CGCG | 3 cut(s) | 147, 299, 441 |
| BspLI | GGNNCC | 2 cut(s) | 143, 262 |
| BspMAI | CTGCAG | 1 cut(s) | 549 |
| BspPI | GGATC | 1 cut(s) | 55 |
| BspT107I | GGYRCC | 1 cut(s) | 260 |
| BsrI | ACTGG | 1 cut(s) | 275 |
| BssECI | CCNNGG | 2 cut(s) | 162, 183 |
| BssMI | GATC | 3 cut(s) | 60, 379, 514 |
| BssNI | GRCGYC | 1 cut(s) | 488 |
| Bst2UI | CCWGG | 2 cut(s) | 239, 530 |
| Bst4CI | ACNGT | 1 cut(s) | 163 |
| BstACI | GRCGYC | 1 cut(s) | 488 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 155 |
| BstC8I | GCNNGC | 6 cut(s) | 198, 295, 321, 325, 549, 553 |
| BstDEI | CTNAG | 2 cut(s) | 128, 402 |
| BstDSI | CCRYGG | 1 cut(s) | 162 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 23 |
| BstF5I | GGATG | 2 cut(s) | 118, 478 |
| BstFNI | CGCG | 3 cut(s) | 147, 299, 441 |
| BstHHI | GCGC | 4 cut(s) | 149, 202, 299, 443 |
| BstKTI | GATC | 3 cut(s) | 63, 382, 517 |
| BstMBI | GATC | 3 cut(s) | 60, 379, 514 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 89, 155, 316 |
| BstNI | CCWGG | 2 cut(s) | 239, 530 |
| BstSCI | CCNGG | 3 cut(s) | 122, 237, 528 |
| BstSFI | CTRYAG | 1 cut(s) | 545 |
| BstUI | CGCG | 3 cut(s) | 147, 299, 441 |
| BstV1I | GCAGC | 6 cut(s) | 142, 319, 322, 325, 531, 559 |
| BstX2I | RGATCY | 1 cut(s) | 60 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 327 |
| BstYI | RGATCY | 1 cut(s) | 60 |
| BsuRI | GGCC | 1 cut(s) | 313 |
| BtgI | CCRYGG | 1 cut(s) | 162 |
| BtsCI | GGATG | 2 cut(s) | 118, 478 |
| BtsI | GCAGTG | 2 cut(s) | 228, 373 |
| BtsIMutI | CAGTG | 2 cut(s) | 228, 373 |
| Cac8I | GCNNGC | 6 cut(s) | 198, 295, 321, 325, 549, 553 |
| CaiI | CAGNNNCTG | 1 cut(s) | 155 |
| CfoI | GCGC | 4 cut(s) | 149, 202, 299, 443 |
| Cfr13I | GGNCC | 3 cut(s) | 28, 241, 386 |
| CseI | GACGC | 3 cut(s) | 270, 288, 496 |
| Csp6I | GTAC | 1 cut(s) | 477 |
| CviAII | CATG | 1 cut(s) | 383 |
| CviQI | GTAC | 1 cut(s) | 477 |
| DdeI | CTNAG | 2 cut(s) | 128, 402 |
| DpnI | GATC | 3 cut(s) | 62, 381, 516 |
| DpnII | GATC | 3 cut(s) | 60, 379, 514 |
| DriI | GACNNNNNGTC | 1 cut(s) | 492 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 492 |
| Eco47I | GGWCC | 3 cut(s) | 28, 241, 386 |
| Eco57I | CTGAAG | 2 cut(s) | 44, 450 |
| Eco88I | CYCGRG | 1 cut(s) | 465 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 23 |
| EcoRII | CCWGG | 2 cut(s) | 237, 528 |
| EcoT22I | ATGCAT | 1 cut(s) | 400 |
| FaeI | CATG | 1 cut(s) | 386 |
| FaiI | YATR | 6 cut(s) | 190, 384, 452, 482, 507, 589 |
| FaqI | GGGAC | 3 cut(s) | 268, 421, 480 |
| FatI | CATG | 1 cut(s) | 382 |
| FauI | CCCGC | 1 cut(s) | 446 |
| FbaI | TGATCA | 2 cut(s) | 379, 514 |
| Fnu4HI | GCNGC | 9 cut(s) | 81, 145, 156, 308, 311, 336, 339, 545, 573 |
| FokI | GGATG | 2 cut(s) | 125, 485 |
| Fsp4HI | GCNGC | 9 cut(s) | 81, 145, 156, 308, 311, 336, 339, 545, 573 |
| FspBI | CTAG | 1 cut(s) | 35 |
| GlaI | GCGC | 4 cut(s) | 148, 201, 298, 442 |
| GluI | GCNGC | 9 cut(s) | 81, 145, 156, 308, 311, 336, 339, 545, 573 |
| GsuI | CTGGAG | 1 cut(s) | 23 |
| HaeIII | GGCC | 1 cut(s) | 313 |
| HapII | CCGG | 2 cut(s) | 124, 389 |
| HgaI | GACGC | 3 cut(s) | 270, 288, 496 |
| HhaI | GCGC | 4 cut(s) | 149, 202, 299, 443 |
| Hin1I | GRCGYC | 1 cut(s) | 488 |
| Hin1II | CATG | 1 cut(s) | 386 |
| Hin6I | GCGC | 4 cut(s) | 147, 200, 297, 441 |
| HinP1I | GCGC | 4 cut(s) | 147, 200, 297, 441 |
| HindIII | AAGCTT | 1 cut(s) | 194 |
| HinfI | GANTC | 3 cut(s) | 74, 409, 493 |
| HpaII | CCGG | 2 cut(s) | 124, 389 |
| HphI | GGTGA | 2 cut(s) | 383, 496 |
| Hpy188I | TCNGA | 3 cut(s) | 430, 514, 519 |
| Hpy188III | TCNNGA | 1 cut(s) | 467 |
| Hpy99I | CGWCG | 1 cut(s) | 304 |
| HpyAV | CCTTC | 4 cut(s) | 19, 37, 74, 211 |
| HpyCH4III | ACNGT | 1 cut(s) | 163 |
| HpyCH4IV | ACGT | 1 cut(s) | 358 |
| HpyCH4V | TGCA | 3 cut(s) | 356, 398, 547 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 89, 155, 316 |
| HpyF3I | CTNAG | 2 cut(s) | 128, 402 |
| HpySE526I | ACGT | 1 cut(s) | 358 |
| Hsp92I | GRCGYC | 1 cut(s) | 488 |
| Hsp92II | CATG | 1 cut(s) | 386 |
| HspAI | GCGC | 4 cut(s) | 147, 200, 297, 441 |
| Ksp22I | TGATCA | 2 cut(s) | 379, 514 |
| Kzo9I | GATC | 3 cut(s) | 60, 379, 514 |
| LmnI | GCTCC | 4 cut(s) | 4, 94, 141, 580 |
| Lsp1109I | GCAGC | 6 cut(s) | 142, 319, 322, 325, 531, 559 |
| LweI | GCATC | 3 cut(s) | 343, 385, 407 |
| MaeI | CTAG | 1 cut(s) | 35 |
| MaeII | ACGT | 1 cut(s) | 358 |
| MaeIII | GTNAC | 2 cut(s) | 226, 484 |
| MalI | GATC | 3 cut(s) | 62, 381, 516 |
| MboI | GATC | 3 cut(s) | 60, 379, 514 |
| MflI | RGATCY | 1 cut(s) | 60 |
| MluCI | AATT | 2 cut(s) | 104, 345 |
| MlyI | GAGTC | 2 cut(s) | 403, 502 |
| Mph1103I | ATGCAT | 1 cut(s) | 400 |
| MseI | TTAA | 3 cut(s) | 48, 174, 534 |
| MspA1I | CMGCKG | 3 cut(s) | 310, 406, 544 |
| MspI | CCGG | 2 cut(s) | 124, 389 |
| MspR9I | CCNGG | 3 cut(s) | 124, 239, 530 |
| MvaI | CCWGG | 2 cut(s) | 239, 530 |
| MvnI | CGCG | 3 cut(s) | 147, 299, 441 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 89, 155, 316 |
| NciI | CCSGG | 1 cut(s) | 124 |
| NdeII | GATC | 3 cut(s) | 60, 379, 514 |
| NlaIII | CATG | 1 cut(s) | 386 |
| NlaIV | GGNNCC | 2 cut(s) | 143, 262 |
| NmeAIII | GCCGAG | 2 cut(s) | 164, 516 |
| NmuCI | GTSAC | 2 cut(s) | 226, 484 |
| NsiI | ATGCAT | 1 cut(s) | 400 |
| PfeI | GAWTC | 1 cut(s) | 74 |
| PflFI | GACNNNGTC | 1 cut(s) | 272 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 270 |
| PkrI | GCNGC | 9 cut(s) | 82, 146, 157, 309, 312, 337, 340, 546, 574 |
| PleI | GAGTC | 2 cut(s) | 403, 501 |
| PpsI | GAGTC | 2 cut(s) | 403, 501 |
| Psp6I | CCWGG | 2 cut(s) | 237, 528 |
| PspGI | CCWGG | 2 cut(s) | 237, 528 |
| PspN4I | GGNNCC | 2 cut(s) | 143, 262 |
| PspPI | GGNCC | 3 cut(s) | 28, 241, 386 |
| PstI | CTGCAG | 1 cut(s) | 549 |
| PstNI | CAGNNNCTG | 1 cut(s) | 155 |
| PsuI | RGATCY | 1 cut(s) | 60 |
| PsyI | GACNNNGTC | 1 cut(s) | 272 |
| PvuII | CAGCTG | 1 cut(s) | 544 |
| RsaI | GTAC | 1 cut(s) | 478 |
| RsaNI | GTAC | 1 cut(s) | 477 |
| SaqAI | TTAA | 3 cut(s) | 48, 174, 534 |
| SatI | GCNGC | 9 cut(s) | 81, 145, 156, 308, 311, 336, 339, 545, 573 |
| Sau3AI | GATC | 3 cut(s) | 60, 379, 514 |
| Sau96I | GGNCC | 3 cut(s) | 28, 241, 386 |
| SchI | GAGTC | 2 cut(s) | 403, 502 |
| ScrFI | CCNGG | 3 cut(s) | 124, 239, 530 |
| SfaNI | GCATC | 3 cut(s) | 343, 385, 407 |
| SfcI | CTRYAG | 1 cut(s) | 545 |
| SinI | GGWCC | 3 cut(s) | 28, 241, 386 |
| Sse9I | AATT | 2 cut(s) | 104, 345 |
| SsiI | CCGC | 6 cut(s) | 81, 92, 145, 310, 406, 439 |
| SspMI | CTAG | 1 cut(s) | 35 |
| StyD4I | CCNGG | 3 cut(s) | 122, 237, 528 |
| TaaI | ACNGT | 1 cut(s) | 163 |
| TaiI | ACGT | 1 cut(s) | 361 |
| TaqI | TCGA | 2 cut(s) | 108, 302 |
| TasI | AATT | 2 cut(s) | 104, 345 |
| TauI | GCSGC | 3 cut(s) | 83, 147, 313 |
| TfiI | GAWTC | 1 cut(s) | 74 |
| Tru1I | TTAA | 3 cut(s) | 48, 174, 534 |
| Tru9I | TTAA | 3 cut(s) | 48, 174, 534 |
| TscAI | CASTG | 2 cut(s) | 235, 373 |
| TseFI | GTSAC | 2 cut(s) | 226, 484 |
| TseI | GCWGC | 6 cut(s) | 155, 307, 335, 338, 544, 572 |
| Tsp45I | GTSAC | 2 cut(s) | 226, 484 |
| TspDTI | ATGAA | 1 cut(s) | 129 |
| TspGWI | ACGGA | 1 cut(s) | 221 |
| TspRI | CASTG | 2 cut(s) | 235, 373 |
| Tth111I | GACNNNGTC | 1 cut(s) | 272 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 270 |
| VpaK11BI | GGWCC | 3 cut(s) | 28, 241, 386 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 23 |
| XapI | RAATTY | 1 cut(s) | 104 |
| XspI | CTAG | 1 cut(s) | 35 |
| Zsp2I | ATGCAT | 1 cut(s) | 400 |