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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 225, 293, 416 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 235 |
| AccBSI | CCGCTC | 1 cut(s) | 443 |
| AccII | CGCG | 1 cut(s) | 12 |
| AclWI | GGATC | 2 cut(s) | 105, 457 |
| AcoI | YGGCCR | 2 cut(s) | 27, 393 |
| AcuI | CTGAAG | 4 cut(s) | 113, 119, 234, 512 |
| AcyI | GRCGYC | 2 cut(s) | 226, 428 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 36, 159, 235, 289, 290, 494 |
| AgsI | TTSAA | 1 cut(s) | 35 |
| AjnI | CCWGG | 2 cut(s) | 202, 445 |
| AleI | CACNNNNGTG | 1 cut(s) | 422 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 173, 205 |
| AluBI | AGCT | 4 cut(s) | 19, 86, 287, 473 |
| AluI | AGCT | 4 cut(s) | 19, 86, 287, 473 |
| AlwI | GGATC | 2 cut(s) | 105, 457 |
| Ama87I | CYCGRG | 1 cut(s) | 518 |
| AoxI | GGCC | 4 cut(s) | 27, 114, 393, 476 |
| ApeKI | GCWGC | 2 cut(s) | 306, 512 |
| AspLEI | GCGC | 1 cut(s) | 228 |
| AspS9I | GGNCC | 2 cut(s) | 40, 476 |
| AsuC2I | CCSGG | 1 cut(s) | 260 |
| AsuHPI | GGTGA | 4 cut(s) | 251, 332, 436, 509 |
| AvaI | CYCGRG | 1 cut(s) | 518 |
| AvaII | GGWCC | 1 cut(s) | 40 |
| BalI | TGGCCA | 1 cut(s) | 29 |
| BanI | GGYRCC | 3 cut(s) | 225, 293, 416 |
| BanII | GRGCYC | 1 cut(s) | 283 |
| BbvCI | CCTCAGC | 1 cut(s) | 288 |
| BbvI | GCAGC | 2 cut(s) | 318, 499 |
| BccI | CCATC | 3 cut(s) | 164, 237, 407 |
| BciT130I | CCWGG | 2 cut(s) | 204, 447 |
| BclI | TGATCA | 1 cut(s) | 454 |
| BcnI | CCSGG | 1 cut(s) | 260 |
| BfaI | CTAG | 1 cut(s) | 470 |
| BfoI | RGCGCY | 1 cut(s) | 229 |
| BisI | GCNGC | 8 cut(s) | 13, 108, 196, 307, 396, 466, 510, 513 |
| BlsI | GCNGC | 8 cut(s) | 14, 109, 197, 308, 397, 467, 511, 514 |
| Bme1390I | CCNGG | 3 cut(s) | 204, 260, 447 |
| Bme18I | GGWCC | 1 cut(s) | 40 |
| BmeT110I | CYCGRG | 1 cut(s) | 518 |
| BmgT120I | GGNCC | 2 cut(s) | 40, 476 |
| BmiI | GGNNCC | 6 cut(s) | 41, 164, 227, 280, 295, 418 |
| BmrFI | CCNGG | 3 cut(s) | 204, 260, 447 |
| BmrI | ACTGGG | 1 cut(s) | 245 |
| BmuI | ACTGGG | 1 cut(s) | 245 |
| Bpu10I | CCTNAGC | 2 cut(s) | 288, 301 |
| BpuEI | CTTGAG | 1 cut(s) | 29 |
| BpuMI | CCSGG | 1 cut(s) | 260 |
| BsaHI | GRCGYC | 2 cut(s) | 226, 428 |
| BsaJI | CCNNGG | 2 cut(s) | 10, 420 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 47, 77 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 36, 159, 235, 289, 290, 494 |
| Bse1I | ACTGG | 1 cut(s) | 240 |
| BseBI | CCWGG | 2 cut(s) | 204, 447 |
| BseDI | CCNNGG | 2 cut(s) | 10, 420 |
| BseGI | GGATG | 2 cut(s) | 10, 418 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 36, 159, 235, 289, 290, 494 |
| BseMII | CTCAG | 3 cut(s) | 279, 315, 356 |
| BseNI | ACTGG | 1 cut(s) | 240 |
| BseXI | GCAGC | 2 cut(s) | 318, 499 |
| BseYI | CCCAGC | 2 cut(s) | 283, 473 |
| Bsh1236I | CGCG | 1 cut(s) | 12 |
| BshFI | GGCC | 4 cut(s) | 29, 116, 395, 478 |
| BshNI | GGYRCC | 3 cut(s) | 225, 293, 416 |
| BsiHKCI | CYCGRG | 1 cut(s) | 518 |
| BsiSI | CCGG | 2 cut(s) | 259, 329 |
| BslFI | GGGAC | 1 cut(s) | 53 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 36, 159, 235, 289, 290, 494 |
| BsmFI | GGGAC | 1 cut(s) | 53 |
| BsnI | GGCC | 4 cut(s) | 29, 116, 395, 478 |
| BsoBI | CYCGRG | 1 cut(s) | 518 |
| Bsp1286I | GDGCHC | 1 cut(s) | 283 |
| Bsp143I | GATC | 3 cut(s) | 97, 449, 454 |
| Bsp19I | CCATGG | 1 cut(s) | 420 |
| BspANI | GGCC | 4 cut(s) | 29, 116, 395, 478 |
| BspCNI | CTCAG | 3 cut(s) | 280, 314, 355 |
| BspFNI | CGCG | 1 cut(s) | 12 |
| BspLI | GGNNCC | 6 cut(s) | 41, 164, 227, 280, 295, 418 |
| BspPI | GGATC | 2 cut(s) | 105, 457 |
| BspT107I | GGYRCC | 3 cut(s) | 225, 293, 416 |
| BsrBI | CCGCTC | 1 cut(s) | 443 |
| BsrI | ACTGG | 1 cut(s) | 240 |
| BssECI | CCNNGG | 2 cut(s) | 10, 420 |
| BssMI | GATC | 3 cut(s) | 97, 449, 454 |
| BssNI | GRCGYC | 2 cut(s) | 226, 428 |
| BssT1I | CCWWGG | 1 cut(s) | 420 |
| Bst2UI | CCWGG | 2 cut(s) | 204, 447 |
| BstACI | GRCGYC | 2 cut(s) | 226, 428 |
| BstC8I | GCNNGC | 3 cut(s) | 10, 17, 298 |
| BstDEI | CTNAG | 3 cut(s) | 288, 301, 342 |
| BstDSI | CCRYGG | 2 cut(s) | 10, 420 |
| BstF5I | GGATG | 2 cut(s) | 10, 418 |
| BstFNI | CGCG | 1 cut(s) | 12 |
| BstH2I | RGCGCY | 1 cut(s) | 229 |
| BstHHI | GCGC | 1 cut(s) | 228 |
| BstKTI | GATC | 3 cut(s) | 100, 452, 457 |
| BstMBI | GATC | 3 cut(s) | 97, 449, 454 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 113, 183, 192, 293, 306 |
| BstNI | CCWGG | 2 cut(s) | 204, 447 |
| BstNSI | RCATGY | 1 cut(s) | 212 |
| BstSCI | CCNGG | 3 cut(s) | 202, 258, 445 |
| BstUI | CGCG | 1 cut(s) | 12 |
| BstV1I | GCAGC | 2 cut(s) | 318, 499 |
| BstX2I | RGATCY | 1 cut(s) | 449 |
| BstYI | RGATCY | 1 cut(s) | 449 |
| BsuRI | GGCC | 4 cut(s) | 29, 116, 395, 478 |
| BtgI | CCRYGG | 2 cut(s) | 10, 420 |
| BtgZI | GCGATG | 1 cut(s) | 324 |
| BtsCI | GGATG | 2 cut(s) | 10, 418 |
| BtsIMutI | CAGTG | 1 cut(s) | 350 |
| Cac8I | GCNNGC | 3 cut(s) | 10, 17, 298 |
| CfoI | GCGC | 1 cut(s) | 228 |
| Cfr13I | GGNCC | 2 cut(s) | 40, 476 |
| Cfr42I | CCGCGG | 1 cut(s) | 13 |
| CseI | GACGC | 2 cut(s) | 314, 436 |
| CviAII | CATG | 4 cut(s) | 167, 209, 391, 421 |
| DdeI | CTNAG | 3 cut(s) | 288, 301, 342 |
| DinI | GGCGCC | 1 cut(s) | 227 |
| DpnI | GATC | 3 cut(s) | 99, 451, 456 |
| DpnII | GATC | 3 cut(s) | 97, 449, 454 |
| EaeI | YGGCCR | 2 cut(s) | 27, 393 |
| EciI | GGCGGA | 1 cut(s) | 347 |
| Eco130I | CCWWGG | 1 cut(s) | 420 |
| Eco24I | GRGCYC | 1 cut(s) | 283 |
| Eco47I | GGWCC | 1 cut(s) | 40 |
| Eco57I | CTGAAG | 4 cut(s) | 113, 119, 234, 512 |
| Eco88I | CYCGRG | 1 cut(s) | 518 |
| EcoO109I | RGGNCCY | 1 cut(s) | 40 |
| EcoRII | CCWGG | 2 cut(s) | 202, 445 |
| EcoT14I | CCWWGG | 1 cut(s) | 420 |
| EcoT38I | GRGCYC | 1 cut(s) | 283 |
| EgeI | GGCGCC | 1 cut(s) | 227 |
| EheI | GGCGCC | 1 cut(s) | 227 |
| ErhI | CCWWGG | 1 cut(s) | 420 |
| FaeI | CATG | 4 cut(s) | 170, 212, 394, 424 |
| FaiI | YATR | 5 cut(s) | 83, 168, 210, 392, 422 |
| FaqI | GGGAC | 1 cut(s) | 53 |
| FatI | CATG | 4 cut(s) | 166, 208, 390, 420 |
| FauI | CCCGC | 4 cut(s) | 17, 132, 263, 268 |
| FbaI | TGATCA | 1 cut(s) | 454 |
| Fnu4HI | GCNGC | 8 cut(s) | 13, 108, 196, 307, 396, 466, 510, 513 |
| FokI | GGATG | 2 cut(s) | 17, 425 |
| FriOI | GRGCYC | 1 cut(s) | 283 |
| Fsp4HI | GCNGC | 8 cut(s) | 13, 108, 196, 307, 396, 466, 510, 513 |
| FspBI | CTAG | 1 cut(s) | 470 |
| GlaI | GCGC | 1 cut(s) | 227 |
| GluI | GCNGC | 8 cut(s) | 13, 108, 196, 307, 396, 466, 510, 513 |
| GsaI | CCCAGC | 2 cut(s) | 287, 477 |
| HaeII | RGCGCY | 1 cut(s) | 229 |
| HaeIII | GGCC | 4 cut(s) | 29, 116, 395, 478 |
| HapII | CCGG | 2 cut(s) | 259, 329 |
| HgaI | GACGC | 2 cut(s) | 314, 436 |
| HhaI | GCGC | 1 cut(s) | 228 |
| Hin1I | GRCGYC | 2 cut(s) | 226, 428 |
| Hin1II | CATG | 4 cut(s) | 170, 212, 394, 424 |
| Hin6I | GCGC | 1 cut(s) | 226 |
| HinP1I | GCGC | 1 cut(s) | 226 |
| HinfI | GANTC | 5 cut(s) | 130, 143, 246, 338, 349 |
| HpaII | CCGG | 2 cut(s) | 259, 329 |
| HphI | GGTGA | 4 cut(s) | 251, 332, 436, 509 |
| Hpy188I | TCNGA | 3 cut(s) | 370, 454, 459 |
| Hpy188III | TCNNGA | 1 cut(s) | 518 |
| HpyAV | CCTTC | 4 cut(s) | 88, 176, 215, 487 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 113, 183, 192, 293, 306 |
| HpyF3I | CTNAG | 3 cut(s) | 288, 301, 342 |
| Hsp92I | GRCGYC | 2 cut(s) | 226, 428 |
| Hsp92II | CATG | 4 cut(s) | 170, 212, 394, 424 |
| HspAI | GCGC | 1 cut(s) | 226 |
| KasI | GGCGCC | 1 cut(s) | 225 |
| Ksp22I | TGATCA | 1 cut(s) | 454 |
| KspI | CCGCGG | 1 cut(s) | 13 |
| Kzo9I | GATC | 3 cut(s) | 97, 449, 454 |
| LmnI | GCTCC | 4 cut(s) | 162, 278, 448, 520 |
| Lsp1109I | GCAGC | 2 cut(s) | 318, 499 |
| MaeI | CTAG | 1 cut(s) | 470 |
| MaeIII | GTNAC | 1 cut(s) | 424 |
| MalI | GATC | 3 cut(s) | 99, 451, 456 |
| MbiI | CCGCTC | 1 cut(s) | 443 |
| MboI | GATC | 3 cut(s) | 97, 449, 454 |
| MboII | GAAGA | 2 cut(s) | 125, 512 |
| MflI | RGATCY | 1 cut(s) | 449 |
| MhlI | GDGCHC | 1 cut(s) | 283 |
| MlsI | TGGCCA | 1 cut(s) | 29 |
| MluCI | AATT | 2 cut(s) | 68, 523 |
| MluNI | TGGCCA | 1 cut(s) | 29 |
| Mly113I | GGCGCC | 1 cut(s) | 226 |
| MlyI | GAGTC | 2 cut(s) | 152, 255 |
| MmeI | TCCRAC | 1 cut(s) | 393 |
| MnlI | CCTC | 5 cut(s) | 53, 167, 283, 366, 403 |
| Mox20I | TGGCCA | 1 cut(s) | 29 |
| MscI | TGGCCA | 1 cut(s) | 29 |
| MslI | CAYNNNNRTG | 1 cut(s) | 422 |
| Msp20I | TGGCCA | 1 cut(s) | 29 |
| MspA1I | CMGCKG | 6 cut(s) | 12, 139, 275, 287, 490, 512 |
| MspI | CCGG | 2 cut(s) | 259, 329 |
| MspR9I | CCNGG | 3 cut(s) | 204, 260, 447 |
| MvaI | CCWGG | 2 cut(s) | 204, 447 |
| MvnI | CGCG | 1 cut(s) | 12 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 113, 183, 192, 293, 306 |
| NarI | GGCGCC | 1 cut(s) | 226 |
| NciI | CCSGG | 1 cut(s) | 260 |
| NcoI | CCATGG | 1 cut(s) | 420 |
| NdeII | GATC | 3 cut(s) | 97, 449, 454 |
| NlaIII | CATG | 4 cut(s) | 170, 212, 394, 424 |
| NlaIV | GGNNCC | 6 cut(s) | 41, 164, 227, 280, 295, 418 |
| NmuCI | GTSAC | 1 cut(s) | 424 |
| NspI | RCATGY | 1 cut(s) | 212 |
| OliI | CACNNNNGTG | 1 cut(s) | 422 |
| PfeI | GAWTC | 3 cut(s) | 130, 338, 349 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 235 |
| PfoI | TCCNGGA | 1 cut(s) | 445 |
| PkrI | GCNGC | 8 cut(s) | 14, 109, 197, 308, 397, 467, 511, 514 |
| PleI | GAGTC | 2 cut(s) | 151, 254 |
| PluTI | GGCGCC | 1 cut(s) | 229 |
| PpsI | GAGTC | 2 cut(s) | 151, 254 |
| PpuMI | RGGWCCY | 1 cut(s) | 40 |
| Psp5II | RGGWCCY | 1 cut(s) | 40 |
| Psp6I | CCWGG | 2 cut(s) | 202, 445 |
| PspFI | CCCAGC | 2 cut(s) | 283, 473 |
| PspGI | CCWGG | 2 cut(s) | 202, 445 |
| PspN4I | GGNNCC | 6 cut(s) | 41, 164, 227, 280, 295, 418 |
| PspPI | GGNCC | 2 cut(s) | 40, 476 |
| PspPPI | RGGWCCY | 1 cut(s) | 40 |
| PsuI | RGATCY | 1 cut(s) | 449 |
| PvuII | CAGCTG | 1 cut(s) | 287 |
| RseI | CAYNNNNRTG | 1 cut(s) | 422 |
| SacII | CCGCGG | 1 cut(s) | 13 |
| SatI | GCNGC | 8 cut(s) | 13, 108, 196, 307, 396, 466, 510, 513 |
| Sau3AI | GATC | 3 cut(s) | 97, 449, 454 |
| Sau96I | GGNCC | 2 cut(s) | 40, 476 |
| SchI | GAGTC | 2 cut(s) | 152, 255 |
| ScrFI | CCNGG | 3 cut(s) | 204, 260, 447 |
| SduI | GDGCHC | 1 cut(s) | 283 |
| SetI | ASST | 8 cut(s) | 21, 45, 88, 205, 272, 289, 358, 475 |
| SfoI | GGCGCC | 1 cut(s) | 227 |
| Sfr303I | CCGCGG | 1 cut(s) | 13 |
| SgrBI | CCGCGG | 1 cut(s) | 13 |
| SinI | GGWCC | 1 cut(s) | 40 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 422 |
| SmlI | CTYRAG | 1 cut(s) | 44 |
| SmoI | CTYRAG | 1 cut(s) | 44 |
| Sse9I | AATT | 2 cut(s) | 68, 523 |
| SspDI | GGCGCC | 1 cut(s) | 225 |
| SspMI | CTAG | 1 cut(s) | 470 |
| StyD4I | CCNGG | 3 cut(s) | 202, 258, 445 |
| StyI | CCWWGG | 1 cut(s) | 420 |
| TaqI | TCGA | 1 cut(s) | 232 |
| TasI | AATT | 2 cut(s) | 68, 523 |
| TauI | GCSGC | 6 cut(s) | 15, 110, 198, 398, 468, 512 |
| TfiI | GAWTC | 3 cut(s) | 130, 338, 349 |
| TscAI | CASTG | 1 cut(s) | 350 |
| TseFI | GTSAC | 1 cut(s) | 424 |
| TseI | GCWGC | 2 cut(s) | 306, 512 |
| Tsp45I | GTSAC | 1 cut(s) | 424 |
| TspDTI | ATGAA | 1 cut(s) | 379 |
| TspRI | CASTG | 1 cut(s) | 350 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 235 |
| VpaK11BI | GGWCC | 1 cut(s) | 40 |
| XceI | RCATGY | 1 cut(s) | 212 |
| XspI | CTAG | 1 cut(s) | 470 |