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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 310 |
| AciI | CCGC | 8 cut(s) | 70, 124, 212, 361, 421, 437, 459, 462 |
| AclI | AACGTT | 1 cut(s) | 342 |
| AclWI | GGATC | 2 cut(s) | 36, 55 |
| AcuI | CTGAAG | 1 cut(s) | 269 |
| AcyI | GRCGYC | 2 cut(s) | 291, 383 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 70, 213, 300, 325 |
| AgsI | TTSAA | 2 cut(s) | 100, 175 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 387 |
| AjnI | CCWGG | 4 cut(s) | 237, 332, 400, 423 |
| AluBI | AGCT | 3 cut(s) | 161, 200, 230 |
| AluI | AGCT | 3 cut(s) | 161, 200, 230 |
| AlwI | GGATC | 2 cut(s) | 36, 55 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 401 |
| AoxI | GGCC | 1 cut(s) | 336 |
| ApeKI | GCWGC | 3 cut(s) | 67, 227, 230 |
| AspLEI | GCGC | 1 cut(s) | 355 |
| AspS9I | GGNCC | 3 cut(s) | 303, 336, 372 |
| AsuC2I | CCSGG | 2 cut(s) | 308, 365 |
| AvaII | GGWCC | 2 cut(s) | 303, 372 |
| AxyI | CCTNAGG | 1 cut(s) | 285 |
| BanI | GGYRCC | 1 cut(s) | 310 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 35 |
| BbsI | GAAGAC | 1 cut(s) | 117 |
| BbvI | GCAGC | 3 cut(s) | 79, 217, 239 |
| BccI | CCATC | 2 cut(s) | 362, 383 |
| BciT130I | CCWGG | 4 cut(s) | 239, 334, 402, 425 |
| BcnI | CCSGG | 2 cut(s) | 308, 365 |
| BfaI | CTAG | 1 cut(s) | 107 |
| BfmI | CTRYAG | 1 cut(s) | 65 |
| BisI | GCNGC | 6 cut(s) | 68, 228, 231, 421, 459, 462 |
| BlsI | GCNGC | 6 cut(s) | 69, 229, 232, 422, 460, 463 |
| Bme1390I | CCNGG | 6 cut(s) | 239, 308, 334, 365, 402, 425 |
| Bme18I | GGWCC | 2 cut(s) | 303, 372 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 387 |
| BmgT120I | GGNCC | 3 cut(s) | 303, 336, 372 |
| BmiI | GGNNCC | 4 cut(s) | 305, 312, 373, 406 |
| BmrFI | CCNGG | 6 cut(s) | 239, 308, 334, 365, 402, 425 |
| BmrI | ACTGGG | 2 cut(s) | 313, 381 |
| BmsI | GCATC | 1 cut(s) | 421 |
| BmuI | ACTGGG | 2 cut(s) | 313, 381 |
| BpiI | GAAGAC | 1 cut(s) | 117 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 278, 310 |
| BpmI | CTGGAG | 1 cut(s) | 23 |
| BpuMI | CCSGG | 2 cut(s) | 308, 365 |
| BsaHI | GRCGYC | 2 cut(s) | 291, 383 |
| BsaJI | CCNNGG | 4 cut(s) | 207, 306, 333, 400 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 70, 213, 300, 325 |
| Bse1I | ACTGG | 2 cut(s) | 319, 387 |
| Bse21I | CCTNAGG | 1 cut(s) | 285 |
| BseBI | CCWGG | 4 cut(s) | 239, 334, 402, 425 |
| BseDI | CCNNGG | 4 cut(s) | 207, 306, 333, 400 |
| BseGI | GGATG | 1 cut(s) | 373 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 70, 213, 300, 325 |
| BseMII | CTCAG | 3 cut(s) | 276, 309, 315 |
| BseNI | ACTGG | 2 cut(s) | 319, 387 |
| BseXI | GCAGC | 3 cut(s) | 79, 217, 239 |
| BsgI | GTGCAG | 1 cut(s) | 246 |
| BshFI | GGCC | 1 cut(s) | 338 |
| BshNI | GGYRCC | 1 cut(s) | 310 |
| BsiSI | CCGG | 2 cut(s) | 308, 365 |
| BslFI | GGGAC | 1 cut(s) | 385 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 70, 213, 300, 325 |
| BsmFI | GGGAC | 1 cut(s) | 385 |
| BsnI | GGCC | 1 cut(s) | 338 |
| Bsp143I | GATC | 2 cut(s) | 28, 60 |
| BspACI | CCGC | 8 cut(s) | 70, 124, 212, 361, 421, 437, 459, 462 |
| BspANI | GGCC | 1 cut(s) | 338 |
| BspCNI | CTCAG | 3 cut(s) | 277, 308, 316 |
| BspLI | GGNNCC | 4 cut(s) | 305, 312, 373, 406 |
| BspMAI | CTGCAG | 1 cut(s) | 69 |
| BspPI | GGATC | 2 cut(s) | 36, 55 |
| BspT107I | GGYRCC | 1 cut(s) | 310 |
| BsrI | ACTGG | 2 cut(s) | 319, 387 |
| BssECI | CCNNGG | 4 cut(s) | 207, 306, 333, 400 |
| BssMI | GATC | 2 cut(s) | 28, 60 |
| BssNI | GRCGYC | 2 cut(s) | 291, 383 |
| Bst2UI | CCWGG | 4 cut(s) | 239, 334, 402, 425 |
| BstACI | GRCGYC | 2 cut(s) | 291, 383 |
| BstC8I | GCNNGC | 2 cut(s) | 124, 198 |
| BstDEI | CTNAG | 4 cut(s) | 84, 285, 295, 324 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 298 |
| BstF5I | GGATG | 1 cut(s) | 373 |
| BstHHI | GCGC | 1 cut(s) | 355 |
| BstKTI | GATC | 2 cut(s) | 31, 63 |
| BstMBI | GATC | 2 cut(s) | 28, 60 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 218, 227 |
| BstNI | CCWGG | 4 cut(s) | 239, 334, 402, 425 |
| BstSCI | CCNGG | 6 cut(s) | 237, 306, 332, 363, 400, 423 |
| BstSFI | CTRYAG | 1 cut(s) | 65 |
| BstV1I | GCAGC | 3 cut(s) | 79, 217, 239 |
| BstV2I | GAAGAC | 1 cut(s) | 117 |
| BstX2I | RGATCY | 1 cut(s) | 60 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 346 |
| BstYI | RGATCY | 1 cut(s) | 60 |
| Bsu36I | CCTNAGG | 1 cut(s) | 285 |
| BsuRI | GGCC | 1 cut(s) | 338 |
| BtgZI | GCGATG | 1 cut(s) | 182 |
| BtsCI | GGATG | 1 cut(s) | 373 |
| Cac8I | GCNNGC | 2 cut(s) | 124, 198 |
| CaiI | CAGNNNCTG | 1 cut(s) | 401 |
| CfoI | GCGC | 1 cut(s) | 355 |
| Cfr13I | GGNCC | 3 cut(s) | 303, 336, 372 |
| CseI | GACGC | 3 cut(s) | 136, 299, 391 |
| CviAII | CATG | 1 cut(s) | 278 |
| DdeI | CTNAG | 4 cut(s) | 84, 285, 295, 324 |
| DpnI | GATC | 2 cut(s) | 30, 62 |
| DpnII | GATC | 2 cut(s) | 28, 60 |
| DriI | GACNNNNNGTC | 1 cut(s) | 387 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 387 |
| EciI | GGCGGA | 1 cut(s) | 426 |
| Eco47I | GGWCC | 2 cut(s) | 303, 372 |
| Eco57I | CTGAAG | 1 cut(s) | 269 |
| Eco81I | CCTNAGG | 1 cut(s) | 285 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 298 |
| EcoO109I | RGGNCCY | 1 cut(s) | 303 |
| EcoRII | CCWGG | 4 cut(s) | 237, 332, 400, 423 |
| FaeI | CATG | 1 cut(s) | 281 |
| FaiI | YATR | 2 cut(s) | 245, 279 |
| FaqI | GGGAC | 1 cut(s) | 385 |
| FatI | CATG | 1 cut(s) | 277 |
| FauI | CCCGC | 4 cut(s) | 63, 131, 205, 368 |
| Fnu4HI | GCNGC | 6 cut(s) | 68, 228, 231, 421, 459, 462 |
| FokI | GGATG | 1 cut(s) | 380 |
| Fsp4HI | GCNGC | 6 cut(s) | 68, 228, 231, 421, 459, 462 |
| FspBI | CTAG | 1 cut(s) | 107 |
| GlaI | GCGC | 1 cut(s) | 354 |
| GluI | GCNGC | 6 cut(s) | 68, 228, 231, 421, 459, 462 |
| GsuI | CTGGAG | 1 cut(s) | 23 |
| HaeIII | GGCC | 1 cut(s) | 338 |
| HapII | CCGG | 2 cut(s) | 308, 365 |
| HgaI | GACGC | 3 cut(s) | 136, 299, 391 |
| HhaI | GCGC | 1 cut(s) | 355 |
| Hin1I | GRCGYC | 2 cut(s) | 291, 383 |
| Hin1II | CATG | 1 cut(s) | 281 |
| Hin6I | GCGC | 1 cut(s) | 353 |
| HinP1I | GCGC | 1 cut(s) | 353 |
| HinfI | GANTC | 1 cut(s) | 74 |
| HpaII | CCGG | 2 cut(s) | 308, 365 |
| Hpy188I | TCNGA | 5 cut(s) | 94, 204, 298, 325, 414 |
| Hpy188III | TCNNGA | 3 cut(s) | 107, 284, 379 |
| Hpy99I | CGWCG | 1 cut(s) | 152 |
| HpyAV | CCTTC | 2 cut(s) | 37, 211 |
| HpyCH4IV | ACGT | 1 cut(s) | 342 |
| HpyCH4V | TGCA | 2 cut(s) | 67, 227 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 218, 227 |
| HpyF3I | CTNAG | 4 cut(s) | 84, 285, 295, 324 |
| HpySE526I | ACGT | 1 cut(s) | 342 |
| Hsp92I | GRCGYC | 2 cut(s) | 291, 383 |
| Hsp92II | CATG | 1 cut(s) | 281 |
| HspAI | GCGC | 1 cut(s) | 353 |
| Kzo9I | GATC | 2 cut(s) | 28, 60 |
| LmnI | GCTCC | 3 cut(s) | 4, 410, 439 |
| Lsp1109I | GCAGC | 3 cut(s) | 79, 217, 239 |
| LweI | GCATC | 1 cut(s) | 421 |
| MaeI | CTAG | 1 cut(s) | 107 |
| MaeII | ACGT | 1 cut(s) | 342 |
| MaeIII | GTNAC | 1 cut(s) | 379 |
| MalI | GATC | 2 cut(s) | 30, 62 |
| MboI | GATC | 2 cut(s) | 28, 60 |
| MboII | GAAGA | 2 cut(s) | 122, 464 |
| MflI | RGATCY | 1 cut(s) | 60 |
| MlyI | GAGTC | 1 cut(s) | 83 |
| MmeI | TCCRAC | 1 cut(s) | 416 |
| MnlI | CCTC | 6 cut(s) | 145, 202, 280, 294, 304, 319 |
| MspA1I | CMGCKG | 3 cut(s) | 70, 161, 230 |
| MspI | CCGG | 2 cut(s) | 308, 365 |
| MspR9I | CCNGG | 6 cut(s) | 239, 308, 334, 365, 402, 425 |
| MvaI | CCWGG | 4 cut(s) | 239, 334, 402, 425 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 218, 227 |
| NciI | CCSGG | 2 cut(s) | 308, 365 |
| NdeII | GATC | 2 cut(s) | 28, 60 |
| NlaIII | CATG | 1 cut(s) | 281 |
| NlaIV | GGNNCC | 4 cut(s) | 305, 312, 373, 406 |
| NmuCI | GTSAC | 1 cut(s) | 379 |
| PkrI | GCNGC | 6 cut(s) | 69, 229, 232, 422, 460, 463 |
| PleI | GAGTC | 1 cut(s) | 82 |
| PpsI | GAGTC | 1 cut(s) | 82 |
| PpuMI | RGGWCCY | 1 cut(s) | 303 |
| Psp1406I | AACGTT | 1 cut(s) | 342 |
| Psp5II | RGGWCCY | 1 cut(s) | 303 |
| Psp6I | CCWGG | 4 cut(s) | 237, 332, 400, 423 |
| PspGI | CCWGG | 4 cut(s) | 237, 332, 400, 423 |
| PspN4I | GGNNCC | 4 cut(s) | 305, 312, 373, 406 |
| PspPI | GGNCC | 3 cut(s) | 303, 336, 372 |
| PspPPI | RGGWCCY | 1 cut(s) | 303 |
| PstI | CTGCAG | 1 cut(s) | 69 |
| PstNI | CAGNNNCTG | 1 cut(s) | 401 |
| PsuI | RGATCY | 1 cut(s) | 60 |
| PvuII | CAGCTG | 2 cut(s) | 161, 230 |
| SatI | GCNGC | 6 cut(s) | 68, 228, 231, 421, 459, 462 |
| Sau3AI | GATC | 2 cut(s) | 28, 60 |
| Sau96I | GGNCC | 3 cut(s) | 303, 336, 372 |
| SchI | GAGTC | 1 cut(s) | 83 |
| ScrFI | CCNGG | 6 cut(s) | 239, 308, 334, 365, 402, 425 |
| SfaNI | GCATC | 1 cut(s) | 421 |
| SfcI | CTRYAG | 1 cut(s) | 65 |
| SinI | GGWCC | 2 cut(s) | 303, 372 |
| SsiI | CCGC | 8 cut(s) | 70, 124, 212, 361, 421, 437, 459, 462 |
| SspMI | CTAG | 1 cut(s) | 107 |
| StyD4I | CCNGG | 6 cut(s) | 237, 306, 332, 363, 400, 423 |
| TaiI | ACGT | 1 cut(s) | 345 |
| TaqI | TCGA | 1 cut(s) | 150 |
| TaqII | GACCGA | 1 cut(s) | 221 |
| TauI | GCSGC | 3 cut(s) | 423, 461, 464 |
| TseFI | GTSAC | 1 cut(s) | 379 |
| TseI | GCWGC | 3 cut(s) | 67, 227, 230 |
| Tsp45I | GTSAC | 1 cut(s) | 379 |
| TspDTI | ATGAA | 1 cut(s) | 266 |
| VpaK11BI | GGWCC | 2 cut(s) | 303, 372 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 298 |
| XbaI | TCTAGA | 1 cut(s) | 106 |
| XspI | CTAG | 1 cut(s) | 107 |