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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 64 |
| AclWI | GGATC | 2 cut(s) | 228, 352 |
| AcoI | YGGCCR | 1 cut(s) | 206 |
| AcsI | RAATTY | 2 cut(s) | 564, 590 |
| AcuI | CTGAAG | 1 cut(s) | 451 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 279 |
| AgsI | TTSAA | 4 cut(s) | 401, 510, 538, 589 |
| AluBI | AGCT | 1 cut(s) | 607 |
| AluI | AGCT | 1 cut(s) | 607 |
| Alw26I | GTCTC | 1 cut(s) | 277 |
| AlwI | GGATC | 2 cut(s) | 228, 352 |
| AoxI | GGCC | 3 cut(s) | 104, 202, 206 |
| ApoI | RAATTY | 2 cut(s) | 564, 590 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 577 |
| AspS9I | GGNCC | 2 cut(s) | 105, 471 |
| AsuHPI | GGTGA | 2 cut(s) | 39, 373 |
| AvaII | GGWCC | 1 cut(s) | 471 |
| BbsI | GAAGAC | 1 cut(s) | 638 |
| BccI | CCATC | 1 cut(s) | 338 |
| BcoDI | GTCTC | 1 cut(s) | 277 |
| BfaI | CTAG | 2 cut(s) | 227, 392 |
| BglII | AGATCT | 1 cut(s) | 619 |
| Bme18I | GGWCC | 1 cut(s) | 471 |
| BmgT120I | GGNCC | 2 cut(s) | 105, 471 |
| BmiI | GGNNCC | 1 cut(s) | 473 |
| BmsI | GCATC | 1 cut(s) | 342 |
| BpiI | GAAGAC | 1 cut(s) | 638 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 419, 451 |
| BsaJI | CCNNGG | 5 cut(s) | 50, 212, 244, 273, 340 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 279 |
| Bse118I | RCCGGY | 1 cut(s) | 204 |
| BseDI | CCNNGG | 5 cut(s) | 50, 212, 244, 273, 340 |
| BseGI | GGATG | 2 cut(s) | 326, 330 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 279 |
| BseRI | GAGGAG | 1 cut(s) | 230 |
| BshFI | GGCC | 3 cut(s) | 106, 204, 208 |
| BsiSI | CCGG | 1 cut(s) | 205 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 279 |
| BsmAI | GTCTC | 1 cut(s) | 277 |
| BsmI | GAATGC | 1 cut(s) | 66 |
| BsnI | GGCC | 3 cut(s) | 106, 204, 208 |
| Bsp143I | GATC | 3 cut(s) | 220, 344, 619 |
| Bsp19I | CCATGG | 1 cut(s) | 340 |
| BspACI | CCGC | 1 cut(s) | 64 |
| BspANI | GGCC | 3 cut(s) | 106, 204, 208 |
| BspLI | GGNNCC | 1 cut(s) | 473 |
| BspPI | GGATC | 2 cut(s) | 228, 352 |
| BsrFI | RCCGGY | 1 cut(s) | 204 |
| BssAI | RCCGGY | 1 cut(s) | 204 |
| BssECI | CCNNGG | 5 cut(s) | 50, 212, 244, 273, 340 |
| BssMI | GATC | 3 cut(s) | 220, 344, 619 |
| BssT1I | CCWWGG | 5 cut(s) | 50, 212, 244, 273, 340 |
| BstC8I | GCNNGC | 1 cut(s) | 206 |
| BstDEI | CTNAG | 3 cut(s) | 157, 287, 348 |
| BstDSI | CCRYGG | 1 cut(s) | 340 |
| BstF5I | GGATG | 2 cut(s) | 326, 330 |
| BstKTI | GATC | 3 cut(s) | 223, 347, 622 |
| BstMAI | GTCTC | 1 cut(s) | 277 |
| BstMBI | GATC | 3 cut(s) | 220, 344, 619 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 70 |
| BstV2I | GAAGAC | 1 cut(s) | 638 |
| BstX2I | RGATCY | 2 cut(s) | 344, 619 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 147, 341 |
| BstYI | RGATCY | 2 cut(s) | 344, 619 |
| BsuRI | GGCC | 3 cut(s) | 106, 204, 208 |
| BtgI | CCRYGG | 1 cut(s) | 340 |
| BtsCI | GGATG | 2 cut(s) | 326, 330 |
| Cac8I | GCNNGC | 1 cut(s) | 206 |
| Cfr10I | RCCGGY | 1 cut(s) | 204 |
| Cfr13I | GGNCC | 2 cut(s) | 105, 471 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 643, 678 |
| CviAII | CATG | 4 cut(s) | 74, 341, 407, 476 |
| CviJI | RGCY | 8 cut(s) | 106, 123, 204, 208, 396, 489, 499, 607 |
| CviKI_1 | RGCY | 8 cut(s) | 106, 123, 204, 208, 396, 489, 499, 607 |
| DdeI | CTNAG | 3 cut(s) | 157, 287, 348 |
| DpnI | GATC | 3 cut(s) | 222, 346, 621 |
| DpnII | GATC | 3 cut(s) | 220, 344, 619 |
| EaeI | YGGCCR | 1 cut(s) | 206 |
| Eco130I | CCWWGG | 5 cut(s) | 50, 212, 244, 273, 340 |
| Eco47I | GGWCC | 1 cut(s) | 471 |
| Eco57I | CTGAAG | 1 cut(s) | 451 |
| EcoO109I | RGGNCCY | 1 cut(s) | 471 |
| EcoT14I | CCWWGG | 5 cut(s) | 50, 212, 244, 273, 340 |
| ErhI | CCWWGG | 5 cut(s) | 50, 212, 244, 273, 340 |
| FaeI | CATG | 4 cut(s) | 77, 344, 410, 479 |
| FaiI | YATR | 9 cut(s) | 75, 114, 270, 342, 408, 477, 526, 528, 651 |
| FatI | CATG | 4 cut(s) | 73, 340, 406, 475 |
| FauI | CCCGC | 1 cut(s) | 57 |
| FokI | GGATG | 2 cut(s) | 313, 317 |
| FseI | GGCCGGCC | 1 cut(s) | 208 |
| FspBI | CTAG | 2 cut(s) | 227, 392 |
| HaeIII | GGCC | 3 cut(s) | 106, 204, 208 |
| HapII | CCGG | 1 cut(s) | 205 |
| Hin1II | CATG | 4 cut(s) | 77, 344, 410, 479 |
| HinfI | GANTC | 5 cut(s) | 44, 95, 368, 573, 614 |
| HpaII | CCGG | 1 cut(s) | 205 |
| HphI | GGTGA | 2 cut(s) | 39, 373 |
| Hpy166II | GTNNAC | 1 cut(s) | 381 |
| Hpy188I | TCNGA | 3 cut(s) | 43, 562, 619 |
| Hpy188III | TCNNGA | 1 cut(s) | 469 |
| Hpy8I | GTNNAC | 1 cut(s) | 381 |
| HpyAV | CCTTC | 3 cut(s) | 358, 475, 655 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 73, 131, 355, 479, 597 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 70 |
| HpyF3I | CTNAG | 3 cut(s) | 157, 287, 348 |
| Hsp92II | CATG | 4 cut(s) | 77, 344, 410, 479 |
| KroI | GCCGGC | 1 cut(s) | 204 |
| KroNI | GCCGGC | 1 cut(s) | 206 |
| Kzo9I | GATC | 3 cut(s) | 220, 344, 619 |
| LmnI | GCTCC | 1 cut(s) | 604 |
| LpnPI | CCDG | 4 cut(s) | 218, 454, 471, 481 |
| LweI | GCATC | 1 cut(s) | 342 |
| MaeI | CTAG | 2 cut(s) | 227, 392 |
| MaeIII | GTNAC | 1 cut(s) | 248 |
| MalI | GATC | 3 cut(s) | 222, 346, 621 |
| MboI | GATC | 3 cut(s) | 220, 344, 619 |
| MboII | GAAGA | 3 cut(s) | 251, 453, 643 |
| MflI | RGATCY | 2 cut(s) | 344, 619 |
| MluCI | AATT | 6 cut(s) | 30, 126, 299, 510, 564, 590 |
| MnlI | CCTC | 6 cut(s) | 193, 194, 210, 251, 284, 493 |
| MroNI | GCCGGC | 1 cut(s) | 204 |
| MroXI | GAANNNNTTC | 1 cut(s) | 577 |
| MseI | TTAA | 5 cut(s) | 29, 83, 125, 413, 626 |
| MspI | CCGG | 1 cut(s) | 205 |
| Mva1269I | GAATGC | 1 cut(s) | 66 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 70 |
| NaeI | GCCGGC | 1 cut(s) | 206 |
| NcoI | CCATGG | 1 cut(s) | 340 |
| NdeII | GATC | 3 cut(s) | 220, 344, 619 |
| NgoMIV | GCCGGC | 1 cut(s) | 204 |
| NlaIII | CATG | 4 cut(s) | 77, 344, 410, 479 |
| NlaIV | GGNNCC | 1 cut(s) | 473 |
| NmuCI | GTSAC | 1 cut(s) | 248 |
| PctI | GAATGC | 1 cut(s) | 66 |
| PdiI | GCCGGC | 1 cut(s) | 206 |
| PdmI | GAANNNNTTC | 1 cut(s) | 577 |
| PfeI | GAWTC | 5 cut(s) | 44, 95, 368, 573, 614 |
| PpuMI | RGGWCCY | 1 cut(s) | 471 |
| Psp5II | RGGWCCY | 1 cut(s) | 471 |
| PspN4I | GGNNCC | 1 cut(s) | 473 |
| PspPI | GGNCC | 2 cut(s) | 105, 471 |
| PspPPI | RGGWCCY | 1 cut(s) | 471 |
| PsuI | RGATCY | 2 cut(s) | 344, 619 |
| RigI | GGCCGGCC | 1 cut(s) | 208 |
| SaqAI | TTAA | 5 cut(s) | 29, 83, 125, 413, 626 |
| Sau3AI | GATC | 3 cut(s) | 220, 344, 619 |
| Sau96I | GGNCC | 2 cut(s) | 105, 471 |
| SetI | ASST | 9 cut(s) | 185, 214, 250, 295, 323, 386, 609, 638, 647 |
| SfaNI | GCATC | 1 cut(s) | 342 |
| SinI | GGWCC | 1 cut(s) | 471 |
| Sse9I | AATT | 6 cut(s) | 30, 126, 299, 510, 564, 590 |
| SsiI | CCGC | 1 cut(s) | 64 |
| SspI | AATATT | 1 cut(s) | 661 |
| SspMI | CTAG | 2 cut(s) | 227, 392 |
| StyI | CCWWGG | 5 cut(s) | 50, 212, 244, 273, 340 |
| TaqI | TCGA | 1 cut(s) | 641 |
| TasI | AATT | 6 cut(s) | 30, 126, 299, 510, 564, 590 |
| TfiI | GAWTC | 5 cut(s) | 44, 95, 368, 573, 614 |
| Tru1I | TTAA | 5 cut(s) | 29, 83, 125, 413, 626 |
| Tru9I | TTAA | 5 cut(s) | 29, 83, 125, 413, 626 |
| TseFI | GTSAC | 1 cut(s) | 248 |
| Tsp45I | GTSAC | 1 cut(s) | 248 |
| TspDTI | ATGAA | 6 cut(s) | 101, 129, 315, 377, 395, 456 |
| VpaK11BI | GGWCC | 1 cut(s) | 471 |
| XapI | RAATTY | 2 cut(s) | 564, 590 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 482 |
| XmnI | GAANNNNTTC | 1 cut(s) | 577 |
| XspI | CTAG | 2 cut(s) | 227, 392 |